Wall clock time and date at job start Tue Mar 31 2020 14:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99977 * 2 1 4 4 H 1.48497 * 109.46812 * 270.00210 * 3 2 1 5 5 H 1.48507 * 109.46940 * 29.99858 * 3 2 1 6 6 H 1.48497 * 109.47456 * 149.99774 * 3 2 1 7 7 C 1.38813 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 197.35250 * 7 2 1 9 9 N 1.36936 * 120.00195 * 17.36157 * 7 2 1 10 10 C 1.46931 * 120.63067 * 27.67060 * 9 7 2 11 11 C 1.53187 * 108.77328 * 126.41445 * 10 9 7 12 12 C 1.53036 * 109.34322 * 54.61625 * 11 10 9 13 13 C 1.53035 * 109.54208 * 298.68633 * 12 11 10 14 14 H 1.09008 * 109.46838 * 301.36435 * 13 12 11 15 15 N 1.46494 * 109.52558 * 181.29577 * 13 12 11 16 16 C 1.34783 * 119.99847 * 155.11155 * 15 13 12 17 17 O 1.21486 * 120.00023 * 359.97438 * 16 15 13 18 18 C 1.48351 * 119.99561 * 180.02562 * 16 15 13 19 19 C 1.40178 * 119.19980 * 179.97438 * 18 16 15 20 20 C 1.36619 * 119.70497 * 180.02562 * 19 18 16 21 21 C 1.40593 * 118.20957 * 359.97438 * 20 19 18 22 22 C 1.40737 * 121.37068 * 180.02562 * 21 20 19 23 23 C 1.36585 * 118.12872 * 179.97438 * 22 21 20 24 24 C 1.39433 * 119.84852 * 0.02562 * 23 22 21 25 25 N 1.31011 * 121.83955 * 359.97438 * 24 23 22 26 26 C 1.33862 * 121.42416 * 359.97438 * 25 24 23 27 27 N 1.31878 * 119.20947 * 359.73414 * 18 16 15 28 28 C 1.46924 * 120.62987 * 207.68989 * 9 7 2 29 29 H 0.97006 * 120.00403 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.58722 * 6.62827 * 10 9 7 31 31 H 1.09000 * 109.69982 * 246.27127 * 10 9 7 32 32 H 1.09003 * 109.49294 * 174.58737 * 11 10 9 33 33 H 1.09000 * 109.49839 * 294.64876 * 11 10 9 34 34 H 1.09004 * 109.45659 * 58.67099 * 12 11 10 35 35 H 1.09004 * 109.46253 * 178.62448 * 12 11 10 36 36 H 0.97001 * 120.00015 * 335.11127 * 15 13 12 37 37 H 1.07995 * 120.14411 * 359.97418 * 19 18 16 38 38 H 1.07998 * 120.89484 * 180.02562 * 20 19 18 39 39 H 1.07999 * 120.93746 * 359.95966 * 22 21 20 40 40 H 1.08004 * 120.07370 * 180.02562 * 23 22 21 41 41 H 1.08002 * 119.07974 * 179.97438 * 24 23 22 42 42 H 1.08995 * 109.58607 * 353.37922 * 28 9 7 43 43 H 1.09010 * 109.58203 * 113.79897 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3528 10 6 0.2277 -2.3350 -1.2737 11 6 0.5005 -3.3056 -2.4270 12 6 0.8189 -4.6906 -1.8594 13 6 2.0741 -4.6104 -0.9876 14 1 2.9079 -4.2407 -1.5844 15 7 2.3962 -5.9423 -0.4694 16 6 3.6629 -6.2406 -0.1185 17 8 4.5376 -5.4051 -0.2324 18 6 3.9892 -7.5895 0.4057 19 6 5.3122 -7.8819 0.7651 20 6 5.6243 -9.1210 1.2484 21 6 4.5913 -10.0671 1.3685 22 6 4.8380 -11.3630 1.8590 23 6 3.7855 -12.2289 1.9484 24 6 2.5122 -11.8162 1.5578 25 7 2.2866 -10.6089 1.1016 26 6 3.2721 -9.7100 0.9889 27 7 3.0268 -8.4830 0.5268 28 6 1.8192 -3.6546 0.1821 29 1 -0.4851 0.8401 -0.0004 30 1 0.0985 -1.3268 -1.6674 31 1 -0.6758 -2.6397 -0.7456 32 1 -0.3803 -3.3679 -3.0661 33 1 1.3488 -2.9479 -3.0106 34 1 -0.0201 -5.0374 -1.2561 35 1 0.9894 -5.3887 -2.6791 36 1 1.6979 -6.6094 -0.3789 37 1 6.0814 -7.1313 0.6595 38 1 6.6371 -9.3669 1.5315 39 1 5.8316 -11.6644 2.1561 40 1 3.9392 -13.2309 2.3209 41 1 1.6889 -12.5111 1.6333 42 1 2.7399 -3.5171 0.7490 43 1 1.0467 -4.0684 0.8304 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007376356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:34 Heat of formation + Delta-G solvation = 60.493133 kcal Electronic energy + Delta-G solvation = -26644.698575 eV Core-core repulsion = 22883.665691 eV Total energy + Delta-G solvation = -3761.032884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.58739 -39.76706 -38.01215 -37.11475 -34.65083 -34.19872 -32.44360 -31.47294 -31.26071 -30.41734 -28.68608 -25.90669 -25.23830 -24.60173 -23.00060 -22.34517 -22.01751 -20.58555 -19.58353 -18.97794 -18.12443 -17.53822 -16.72193 -16.35617 -15.73517 -15.57556 -15.12631 -14.73300 -14.63547 -14.55085 -14.31632 -13.91857 -13.59221 -13.49447 -13.41143 -13.08612 -12.47325 -12.36779 -12.29301 -12.25965 -11.77859 -11.49325 -11.09251 -11.02129 -10.83864 -10.77718 -10.21628 -10.17701 -10.15541 -9.86583 -9.67119 -9.58991 -9.34719 -9.33399 -9.28035 -8.79737 -8.36309 -6.63440 -5.73995 -3.16101 -0.30024 0.13283 1.48564 2.10894 3.02478 3.10990 3.40382 3.43333 3.49654 3.52226 3.83191 3.98973 4.19880 4.25138 4.35518 4.50258 4.58420 4.68809 4.90448 4.95103 5.25473 5.32791 5.41316 5.45324 5.47034 5.59278 5.66234 5.73063 5.78794 5.79434 6.11734 6.17136 6.20072 6.31122 6.57452 6.65097 6.68994 6.73670 6.87792 6.92825 7.03189 7.40815 7.63649 7.69817 7.81034 7.87252 8.32060 8.50389 9.26391 9.88709 10.44639 11.34700 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023300 B = 0.002555 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.436324 B =10957.775313 C =11581.415857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.166 3.834 11 C -0.139 4.139 12 C -0.115 4.115 13 C 0.123 3.877 14 H 0.089 0.911 15 N -0.695 5.695 16 C 0.562 3.438 17 O -0.522 6.522 18 C 0.154 3.846 19 C -0.128 4.128 20 C -0.048 4.048 21 C -0.145 4.145 22 C -0.045 4.045 23 C -0.176 4.176 24 C 0.158 3.842 25 N -0.458 5.458 26 C 0.302 3.698 27 N -0.437 5.437 28 C 0.142 3.858 29 H 0.253 0.747 30 H 0.090 0.910 31 H 0.020 0.980 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.408 0.592 37 H 0.159 0.841 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.169 0.831 42 H 0.058 0.942 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.426 -26.452 1.855 27.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.178 4.178 12 C -0.153 4.153 13 C 0.018 3.982 14 H 0.107 0.893 15 N -0.345 5.345 16 C 0.344 3.656 17 O -0.397 6.397 18 C -0.003 4.003 19 C -0.149 4.149 20 C -0.075 4.075 21 C -0.150 4.150 22 C -0.072 4.072 23 C -0.196 4.196 24 C -0.020 4.020 25 N -0.167 5.167 26 C 0.063 3.937 27 N -0.149 5.149 28 C 0.014 3.986 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.243 0.757 37 H 0.176 0.824 38 H 0.168 0.832 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.186 0.814 42 H 0.077 0.923 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 7.200 -25.115 1.269 26.157 hybrid contribution 1.680 -0.115 0.620 1.794 sum 8.879 -25.230 1.889 26.813 Atomic orbital electron populations 1.70046 1.05228 1.25456 1.54120 1.25027 0.95306 0.98393 1.00981 0.86261 0.79147 0.83533 0.77706 1.21419 1.21821 1.20384 1.19241 0.92829 0.84657 1.41165 0.91491 1.44006 1.35593 1.01002 1.50397 1.20853 0.88589 0.98583 0.87905 1.22174 1.00467 0.95097 1.00105 1.21680 0.96712 0.98624 0.98320 1.21871 0.98119 0.80848 0.97357 0.89319 1.46055 1.09035 1.16144 1.63274 1.17818 0.83686 0.85200 0.78849 1.90828 1.47236 1.47803 1.53860 1.21671 0.89953 0.93793 0.94898 1.21908 0.97266 0.97991 0.97703 1.21470 0.99077 0.91974 0.94972 1.19738 0.95995 0.96531 1.02751 1.21504 1.00228 0.91319 0.94151 1.22059 0.93966 1.01586 1.01971 1.23156 0.96513 0.91744 0.90560 1.67648 1.33529 1.01992 1.13513 1.19218 0.87390 0.91204 0.95860 1.67404 1.34864 1.00554 1.12090 1.21184 0.98072 0.86798 0.92516 0.93678 0.89228 0.96236 0.92642 0.92404 0.92036 0.92945 0.75666 0.82384 0.83235 0.83812 0.83795 0.81434 0.92322 0.96278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 11.19 55.49 0.62 -26.04 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 3 Si 0.90 22.32 29.59 -169.99 -5.03 17.29 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.25 -7.11 9.59 -15.06 -0.14 -7.25 16 8 H 0.07 1.92 7.89 -52.49 -0.41 1.50 16 9 N -0.59 -15.26 3.00 -172.32 -0.52 -15.77 16 10 C 0.17 4.02 5.31 -3.71 -0.02 4.00 16 11 C -0.14 -2.66 6.08 -26.62 -0.16 -2.82 16 12 C -0.12 -1.97 5.36 -26.69 -0.14 -2.12 16 13 C 0.12 2.32 2.60 -67.82 -0.18 2.15 16 14 H 0.09 1.85 7.58 -51.92 -0.39 1.45 16 15 N -0.70 -11.39 5.07 -54.48 -0.28 -11.67 16 16 C 0.56 9.37 7.78 -12.09 -0.09 9.28 16 17 O -0.52 -10.17 15.94 5.38 0.09 -10.08 16 18 C 0.15 2.17 6.75 -82.96 -0.56 1.61 16 19 C -0.13 -1.42 9.54 -39.44 -0.38 -1.80 16 20 C -0.05 -0.41 9.89 -39.28 -0.39 -0.79 16 21 C -0.14 -1.39 5.75 -106.68 -0.61 -2.01 16 22 C -0.05 -0.28 9.90 -39.24 -0.39 -0.67 16 23 C -0.18 -0.93 10.04 -39.73 -0.40 -1.32 16 24 C 0.16 1.17 11.14 -17.46 -0.19 0.97 16 25 N -0.46 -5.48 10.43 -12.59 -0.13 -5.62 16 26 C 0.30 3.87 7.62 -157.90 -1.20 2.67 16 27 N -0.44 -6.28 9.56 -9.19 -0.09 -6.37 16 28 C 0.14 3.21 6.09 -3.71 -0.02 3.18 16 29 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.41 6.07 7.91 -40.82 -0.32 5.75 16 37 H 0.16 1.62 7.60 -52.49 -0.40 1.22 16 38 H 0.15 0.68 8.06 -52.49 -0.42 0.25 16 39 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 40 H 0.14 0.26 8.06 -52.48 -0.42 -0.16 16 41 H 0.17 0.66 8.06 -52.49 -0.42 0.23 16 42 H 0.06 1.40 7.93 -51.93 -0.41 0.99 16 43 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 358.76 15.07 5.41 5.41 Total: -1.00 -34.72 358.76 -10.51 -45.23 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.62 Total: 2.60 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -4.97 Total: 5.02 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: -0.39 Total: -65.47 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.72 -10.51 -45.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007376356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.726 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds