Wall clock time and date at job start Tue Mar 31 2020 15:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86796 * 120.00276 * 2 1 4 4 H 1.48500 * 109.47411 * 270.00423 * 3 2 1 5 5 H 1.48500 * 109.47275 * 30.00233 * 3 2 1 6 6 H 1.48499 * 109.47434 * 150.00221 * 3 2 1 7 7 C 1.38811 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00376 * 197.35407 * 7 2 1 9 9 N 1.36937 * 120.00340 * 17.34632 * 7 2 1 10 10 C 1.46925 * 120.63308 * 207.68272 * 9 7 2 11 11 C 1.53200 * 108.76975 * 233.62694 * 10 9 7 12 12 C 1.53040 * 109.34161 * 305.34886 * 11 10 9 13 13 C 1.53101 * 109.50157 * 61.34605 * 12 11 10 14 14 H 1.09000 * 109.48461 * 58.62130 * 13 12 11 15 15 N 1.46503 * 109.51314 * 178.68220 * 13 12 11 16 16 C 1.34776 * 120.00017 * 204.87079 * 15 13 12 17 17 O 1.21507 * 120.00017 * 0.02562 * 16 15 13 18 18 C 1.48235 * 119.99832 * 179.97438 * 16 15 13 19 19 C 1.40573 * 119.74669 * 180.02562 * 18 16 15 20 20 N 1.31259 * 120.57044 * 180.02562 * 19 18 16 21 21 C 1.33785 * 119.80959 * 359.97438 * 20 19 18 22 22 C 1.40539 * 121.00483 * 180.02562 * 21 20 19 23 23 C 1.36083 * 119.75350 * 179.97438 * 22 21 20 24 24 C 1.39484 * 121.01263 * 0.02562 * 23 22 21 25 25 C 1.35981 * 120.98110 * 359.97438 * 24 23 22 26 26 C 1.40817 * 119.70210 * 359.97438 * 25 24 23 27 27 N 1.32164 * 119.74994 * 359.73282 * 18 16 15 28 28 C 1.46928 * 120.62463 * 27.69765 * 9 7 2 29 29 H 0.97007 * 119.99646 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.58468 * 113.84569 * 10 9 7 31 31 H 1.08992 * 109.70519 * 353.48463 * 10 9 7 32 32 H 1.08995 * 109.49702 * 65.32070 * 11 10 9 33 33 H 1.09003 * 109.49133 * 185.38040 * 11 10 9 34 34 H 1.09000 * 109.45683 * 181.40535 * 12 11 10 35 35 H 1.09004 * 109.45671 * 301.36026 * 12 11 10 36 36 H 0.96997 * 119.99837 * 24.87913 * 15 13 12 37 37 H 1.08001 * 119.71813 * 359.97438 * 19 18 16 38 38 H 1.07999 * 120.12618 * 359.95192 * 22 21 20 39 39 H 1.07997 * 119.49110 * 179.97438 * 23 22 21 40 40 H 1.07998 * 119.50405 * 179.97438 * 24 23 22 41 41 H 1.08005 * 120.14880 * 180.02562 * 25 24 23 42 42 H 1.08993 * 109.58957 * 246.15800 * 28 9 7 43 43 H 1.09003 * 109.58686 * 6.58864 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2021 -0.0005 8 1 3.0533 -1.2236 0.2784 9 7 1.3722 -2.3610 -0.3546 10 6 1.8193 -3.6548 0.1790 11 6 2.0749 -4.6092 -0.9918 12 6 0.8196 -4.6895 -1.8636 13 6 0.5013 -3.3032 -2.4301 14 1 1.3499 -2.9449 -3.0128 15 7 -0.6821 -3.3859 -3.2899 16 6 -0.8692 -2.4776 -4.2679 17 8 -0.0563 -1.5904 -4.4368 18 6 -2.0663 -2.5616 -5.1382 19 6 -2.2560 -1.6118 -6.1569 20 7 -3.3103 -1.6706 -6.9366 21 6 -4.2131 -2.6423 -6.7621 22 6 -5.3507 -2.7294 -7.5827 23 6 -6.2526 -3.7287 -7.3830 24 6 -6.0673 -4.6728 -6.3730 25 6 -4.9795 -4.6222 -5.5586 26 6 -4.0231 -3.6037 -5.7343 27 7 -2.9441 -3.5323 -4.9541 28 6 0.2278 -2.3340 -1.2757 29 1 -0.4850 0.8401 0.0004 30 1 1.0469 -4.0695 0.8266 31 1 2.7392 -3.5197 0.7478 32 1 2.9087 -4.2386 -1.5879 33 1 2.3148 -5.6005 -0.6073 34 1 0.9908 -5.3872 -2.6833 35 1 -0.0196 -5.0367 -1.2607 36 1 -1.3309 -4.0942 -3.1552 37 1 -1.5283 -0.8264 -6.2989 38 1 -5.5089 -2.0056 -8.3685 39 1 -7.1255 -3.7914 -8.0158 40 1 -6.7987 -5.4555 -6.2359 41 1 -4.8492 -5.3604 -4.7811 42 1 -0.6743 -2.6411 -0.7467 43 1 0.0984 -1.3254 -1.6683 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007494520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:40 Heat of formation + Delta-G solvation = 57.259094 kcal Electronic energy + Delta-G solvation = -27002.285013 eV Core-core repulsion = 23241.111890 eV Total energy + Delta-G solvation = -3761.173123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.70076 -39.50101 -37.76616 -37.10069 -35.17692 -34.11800 -32.67398 -31.26676 -30.91015 -30.01859 -28.82988 -25.97307 -25.26225 -24.73429 -22.56437 -22.39398 -22.04608 -20.55506 -19.51762 -18.69851 -18.53637 -17.52195 -16.75771 -15.97349 -15.65117 -15.58992 -15.14606 -14.85847 -14.64316 -14.22477 -14.14174 -13.97716 -13.72506 -13.44931 -13.01836 -12.43591 -12.33438 -12.26329 -12.15514 -12.09898 -11.96779 -11.91012 -11.86903 -11.01385 -10.78781 -10.71774 -10.49168 -10.26979 -10.16057 -9.93264 -9.85296 -9.53500 -9.24906 -9.23781 -8.92628 -8.58780 -8.41967 -6.65437 -5.74366 -3.17675 -0.21628 0.17819 1.57647 2.27419 3.12837 3.21062 3.44948 3.51489 3.52186 3.72953 3.84418 3.85251 4.00347 4.44936 4.54545 4.58504 4.79187 4.81349 4.91992 5.14824 5.35285 5.40481 5.51915 5.54608 5.55410 5.63108 5.70003 5.71786 5.89003 5.97477 6.06880 6.15379 6.31144 6.33772 6.42491 6.47128 6.68980 6.76083 6.84898 6.92736 6.97003 7.27034 7.39356 7.72079 7.81865 7.87190 8.43499 8.49671 9.23780 9.87867 10.42615 11.33570 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.003155 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.427647 B = 8873.538816 C = 9913.247048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.902 3.098 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.257 4.257 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.114 3.886 14 H 0.085 0.915 15 N -0.694 5.694 16 C 0.567 3.433 17 O -0.516 6.516 18 C 0.072 3.928 19 C 0.129 3.871 20 N -0.427 5.427 21 C 0.089 3.911 22 C -0.088 4.088 23 C -0.093 4.093 24 C -0.105 4.105 25 C -0.074 4.074 26 C 0.076 3.924 27 N -0.395 5.395 28 C 0.167 3.833 29 H 0.254 0.746 30 H 0.018 0.982 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.403 0.597 37 H 0.189 0.811 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.019 0.981 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.769 -12.179 -13.804 21.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.732 3.268 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.170 4.170 12 C -0.154 4.154 13 C 0.009 3.991 14 H 0.103 0.897 15 N -0.344 5.344 16 C 0.349 3.651 17 O -0.390 6.390 18 C -0.084 4.084 19 C -0.046 4.046 20 N -0.141 5.141 21 C -0.036 4.036 22 C -0.107 4.107 23 C -0.113 4.113 24 C -0.125 4.125 25 C -0.093 4.093 26 C -0.051 4.051 27 N -0.114 5.114 28 C 0.039 3.961 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.238 0.762 37 H 0.206 0.794 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.161 0.839 42 H 0.037 0.963 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.396 -11.459 -13.919 21.328 hybrid contribution -0.035 0.528 0.083 0.535 sum -11.431 -10.931 -13.836 21.014 Atomic orbital electron populations 1.70018 1.05349 1.25561 1.53342 1.25036 0.95268 0.98523 1.00459 0.86292 0.79042 0.83589 0.77854 1.21190 1.21806 1.20427 1.19161 0.92761 0.84800 1.41878 0.91516 1.43963 1.36004 1.01673 1.49416 1.20961 0.97768 0.86834 0.92885 1.22004 0.96907 0.99392 0.98736 1.21685 0.99033 0.95818 0.98867 1.22133 0.86669 0.97302 0.92983 0.89651 1.45942 1.26228 1.30118 1.32125 1.17565 0.84023 0.82861 0.80659 1.90859 1.43825 1.33834 1.70476 1.22704 0.95679 0.93183 0.96878 1.24054 0.94420 0.97109 0.88970 1.68841 1.01358 1.19692 1.24169 1.19815 0.95640 0.92534 0.95578 1.20823 0.91957 0.99047 0.98860 1.21081 0.98981 0.93814 0.97433 1.21024 0.97517 0.99089 0.94831 1.20903 0.92314 0.96582 0.99550 1.19622 0.94320 0.96961 0.94153 1.68533 1.00540 1.19688 1.22601 1.21101 0.88866 0.98890 0.87196 0.93646 0.96372 0.92563 0.92055 0.92554 0.92972 0.92117 0.76249 0.79375 0.84112 0.84589 0.84527 0.83923 0.96343 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 11.19 55.49 0.62 -26.27 16 2 C 0.01 0.18 4.91 -17.43 -0.09 0.09 16 3 Si 0.90 22.52 29.59 -169.99 -5.03 17.49 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.26 -7.19 9.59 -15.06 -0.14 -7.34 16 8 H 0.07 1.83 7.89 -52.48 -0.41 1.41 16 9 N -0.59 -14.92 2.99 -172.32 -0.52 -15.44 16 10 C 0.14 2.93 6.51 -3.71 -0.02 2.91 16 11 C -0.13 -2.19 6.08 -26.61 -0.16 -2.36 16 12 C -0.12 -1.88 5.36 -26.66 -0.14 -2.02 16 13 C 0.11 2.23 2.60 -67.78 -0.18 2.06 16 14 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 15 N -0.69 -11.95 5.07 -54.48 -0.28 -12.23 16 16 C 0.57 10.31 7.78 -12.15 -0.09 10.22 16 17 O -0.52 -11.11 15.98 5.36 0.09 -11.03 16 18 C 0.07 1.12 6.76 -82.74 -0.56 0.56 16 19 C 0.13 1.87 10.75 -16.92 -0.18 1.69 16 20 N -0.43 -5.93 10.45 -10.53 -0.11 -6.04 16 21 C 0.09 1.12 6.60 -84.70 -0.56 0.56 16 22 C -0.09 -0.80 9.98 -39.49 -0.39 -1.20 16 23 C -0.09 -0.62 9.95 -39.89 -0.40 -1.02 16 24 C -0.10 -0.71 9.95 -39.93 -0.40 -1.10 16 25 C -0.07 -0.68 9.99 -39.42 -0.39 -1.08 16 26 C 0.08 0.96 6.59 -84.79 -0.56 0.40 16 27 N -0.40 -5.63 9.64 -7.39 -0.07 -5.70 16 28 C 0.17 4.07 4.89 -3.71 -0.02 4.05 16 29 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.40 5.97 7.94 -40.82 -0.32 5.65 16 37 H 0.19 2.51 7.62 -52.49 -0.40 2.11 16 38 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 40 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.10 2.74 6.04 -51.93 -0.31 2.43 16 LS Contribution 358.92 15.07 5.41 5.41 Total: -1.00 -33.46 358.92 -9.80 -43.26 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.62 Total: 4.10 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: -4.29 Total: 6.44 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -0.35 Total: -65.68 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.46 -9.80 -43.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007494520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.519 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds