Wall clock time and date at job start Tue Mar 31 2020 15:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86796 * 120.00276 * 2 1 4 4 H 1.48500 * 109.47411 * 270.00423 * 3 2 1 5 5 H 1.48500 * 109.47275 * 30.00233 * 3 2 1 6 6 H 1.48499 * 109.47434 * 150.00221 * 3 2 1 7 7 C 1.38811 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00376 * 197.35407 * 7 2 1 9 9 N 1.36937 * 120.00340 * 17.34632 * 7 2 1 10 10 C 1.46925 * 120.63308 * 207.68272 * 9 7 2 11 11 C 1.53200 * 108.76975 * 233.62694 * 10 9 7 12 12 C 1.53040 * 109.34161 * 305.34886 * 11 10 9 13 13 C 1.53101 * 109.50157 * 61.34605 * 12 11 10 14 14 H 1.09000 * 109.48461 * 58.62130 * 13 12 11 15 15 N 1.46503 * 109.51314 * 178.68220 * 13 12 11 16 16 C 1.34776 * 120.00017 * 204.87079 * 15 13 12 17 17 O 1.21507 * 120.00017 * 0.02562 * 16 15 13 18 18 C 1.48235 * 119.99832 * 179.97438 * 16 15 13 19 19 C 1.40573 * 119.74669 * 180.02562 * 18 16 15 20 20 N 1.31259 * 120.57044 * 180.02562 * 19 18 16 21 21 C 1.33785 * 119.80959 * 359.97438 * 20 19 18 22 22 C 1.40539 * 121.00483 * 180.02562 * 21 20 19 23 23 C 1.36083 * 119.75350 * 179.97438 * 22 21 20 24 24 C 1.39484 * 121.01263 * 0.02562 * 23 22 21 25 25 C 1.35981 * 120.98110 * 359.97438 * 24 23 22 26 26 C 1.40817 * 119.70210 * 359.97438 * 25 24 23 27 27 N 1.32164 * 119.74994 * 359.73282 * 18 16 15 28 28 C 1.46928 * 120.62463 * 27.69765 * 9 7 2 29 29 H 0.97007 * 119.99646 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.58468 * 113.84569 * 10 9 7 31 31 H 1.08992 * 109.70519 * 353.48463 * 10 9 7 32 32 H 1.08995 * 109.49702 * 65.32070 * 11 10 9 33 33 H 1.09003 * 109.49133 * 185.38040 * 11 10 9 34 34 H 1.09000 * 109.45683 * 181.40535 * 12 11 10 35 35 H 1.09004 * 109.45671 * 301.36026 * 12 11 10 36 36 H 0.96997 * 119.99837 * 24.87913 * 15 13 12 37 37 H 1.08001 * 119.71813 * 359.97438 * 19 18 16 38 38 H 1.07999 * 120.12618 * 359.95192 * 22 21 20 39 39 H 1.07997 * 119.49110 * 179.97438 * 23 22 21 40 40 H 1.07998 * 119.50405 * 179.97438 * 24 23 22 41 41 H 1.08005 * 120.14880 * 180.02562 * 25 24 23 42 42 H 1.08993 * 109.58957 * 246.15800 * 28 9 7 43 43 H 1.09003 * 109.58686 * 6.58864 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2021 -0.0005 8 1 3.0533 -1.2236 0.2784 9 7 1.3722 -2.3610 -0.3546 10 6 1.8193 -3.6548 0.1790 11 6 2.0749 -4.6092 -0.9918 12 6 0.8196 -4.6895 -1.8636 13 6 0.5013 -3.3032 -2.4301 14 1 1.3499 -2.9449 -3.0128 15 7 -0.6821 -3.3859 -3.2899 16 6 -0.8692 -2.4776 -4.2679 17 8 -0.0563 -1.5904 -4.4368 18 6 -2.0663 -2.5616 -5.1382 19 6 -2.2560 -1.6118 -6.1569 20 7 -3.3103 -1.6706 -6.9366 21 6 -4.2131 -2.6423 -6.7621 22 6 -5.3507 -2.7294 -7.5827 23 6 -6.2526 -3.7287 -7.3830 24 6 -6.0673 -4.6728 -6.3730 25 6 -4.9795 -4.6222 -5.5586 26 6 -4.0231 -3.6037 -5.7343 27 7 -2.9441 -3.5323 -4.9541 28 6 0.2278 -2.3340 -1.2757 29 1 -0.4850 0.8401 0.0004 30 1 1.0469 -4.0695 0.8266 31 1 2.7392 -3.5197 0.7478 32 1 2.9087 -4.2386 -1.5879 33 1 2.3148 -5.6005 -0.6073 34 1 0.9908 -5.3872 -2.6833 35 1 -0.0196 -5.0367 -1.2607 36 1 -1.3309 -4.0942 -3.1552 37 1 -1.5283 -0.8264 -6.2989 38 1 -5.5089 -2.0056 -8.3685 39 1 -7.1255 -3.7914 -8.0158 40 1 -6.7987 -5.4555 -6.2359 41 1 -4.8492 -5.3604 -4.7811 42 1 -0.6743 -2.6411 -0.7467 43 1 0.0984 -1.3254 -1.6683 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007494520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:39 Heat of formation + Delta-G solvation = 33.552456 kcal Electronic energy + Delta-G solvation = -27003.313010 eV Core-core repulsion = 23241.111890 eV Total energy + Delta-G solvation = -3762.201120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.67448 -40.92026 -39.08985 -38.27168 -36.26869 -35.74962 -34.44382 -32.30169 -31.88393 -31.65391 -30.38451 -27.27161 -26.98092 -25.71324 -24.01587 -23.71976 -23.28578 -21.96609 -21.13037 -19.75519 -19.50789 -18.75341 -18.64306 -17.17858 -17.00977 -16.79054 -16.58377 -15.95831 -15.82721 -15.63348 -15.42966 -15.28191 -15.18439 -14.75927 -14.71536 -14.17014 -14.03817 -13.51896 -13.01685 -12.98188 -12.95188 -12.92830 -12.91672 -12.72983 -12.69745 -12.51920 -12.28395 -12.04757 -11.77142 -11.66176 -11.37054 -11.29234 -10.57772 -10.36921 -10.27128 -10.05598 -9.65299 -8.71257 -7.90092 -5.35960 -1.15100 -0.73197 0.72207 1.29340 1.41130 1.46716 1.52446 1.82976 2.06100 2.48345 2.67730 2.89114 2.93657 3.06413 3.26274 3.56609 3.66304 3.78342 3.91686 3.96879 4.09570 4.11983 4.23563 4.24801 4.35754 4.46325 4.58163 4.78793 4.80806 4.85987 4.90472 5.04406 5.08594 5.13161 5.17365 5.19505 5.28896 5.32118 5.35951 5.51577 5.60905 5.66912 5.73302 5.91094 6.28928 6.36690 6.51371 7.03595 7.11790 7.83437 8.32918 9.14827 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.003155 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.427647 B = 8873.538816 C = 9913.247048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.052 4.052 3 Si 0.963 3.037 4 H -0.293 1.293 5 H -0.293 1.293 6 H -0.261 1.261 7 C -0.263 4.263 8 H 0.071 0.929 9 N -0.609 5.609 10 C 0.134 3.866 11 C -0.120 4.120 12 C -0.107 4.107 13 C 0.128 3.872 14 H 0.060 0.940 15 N -0.686 5.686 16 C 0.567 3.433 17 O -0.561 6.561 18 C 0.046 3.954 19 C 0.115 3.885 20 N -0.437 5.437 21 C 0.074 3.926 22 C -0.107 4.107 23 C -0.065 4.065 24 C -0.082 4.082 25 C -0.089 4.089 26 C 0.056 3.944 27 N -0.395 5.395 28 C 0.179 3.821 29 H 0.247 0.753 30 H 0.021 0.979 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.416 0.584 37 H 0.185 0.815 38 H 0.155 0.845 39 H 0.181 0.819 40 H 0.181 0.819 41 H 0.158 0.842 42 H -0.002 1.002 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.938 -15.388 -15.082 25.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.247 4.247 3 Si 0.791 3.209 4 H -0.220 1.220 5 H -0.219 1.219 6 H -0.185 1.185 7 C -0.393 4.393 8 H 0.088 0.912 9 N -0.333 5.333 10 C 0.010 3.990 11 C -0.159 4.159 12 C -0.145 4.145 13 C 0.022 3.978 14 H 0.078 0.922 15 N -0.336 5.336 16 C 0.351 3.649 17 O -0.438 6.438 18 C -0.108 4.108 19 C -0.059 4.059 20 N -0.150 5.150 21 C -0.052 4.052 22 C -0.126 4.126 23 C -0.085 4.085 24 C -0.102 4.102 25 C -0.108 4.108 26 C -0.072 4.072 27 N -0.113 5.113 28 C 0.052 3.948 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.253 0.747 37 H 0.202 0.798 38 H 0.172 0.828 39 H 0.198 0.802 40 H 0.198 0.802 41 H 0.175 0.825 42 H 0.016 0.984 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.534 -14.713 -15.180 25.101 hybrid contribution 0.353 1.362 0.388 1.460 sum -13.181 -13.350 -14.791 23.891 Atomic orbital electron populations 1.70179 1.06756 1.25582 1.55243 1.25806 0.96034 1.01666 1.01202 0.85331 0.78543 0.79776 0.77271 1.22034 1.21907 1.18504 1.19524 0.93104 0.86120 1.40563 0.91153 1.44250 1.35914 1.02818 1.50286 1.21196 0.97655 0.85519 0.94667 1.21901 0.96802 1.00267 0.96977 1.21665 0.99285 0.93643 0.99919 1.21706 0.86537 0.98479 0.91042 0.92154 1.45775 1.25956 1.30353 1.31506 1.17975 0.84333 0.81917 0.80662 1.90817 1.45710 1.35497 1.71806 1.22131 0.95761 0.95161 0.97790 1.23940 0.95142 0.97336 0.89504 1.68837 1.01481 1.20598 1.24115 1.20373 0.96362 0.92143 0.96304 1.21130 0.91497 1.00806 0.99186 1.21669 0.98799 0.91456 0.96540 1.21596 0.96658 0.99162 0.92797 1.21216 0.92444 0.96145 1.00969 1.20151 0.94553 0.98293 0.94234 1.68425 1.00868 1.19045 1.22975 1.20769 0.88163 0.97487 0.88363 0.94453 0.96079 0.92378 0.92720 0.88270 0.89573 0.90822 0.74654 0.79774 0.82779 0.80171 0.80185 0.82472 0.98376 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.81 11.19 21.65 0.24 -58.56 16 2 C -0.05 -3.07 4.91 84.86 0.42 -2.65 16 3 Si 0.96 48.10 29.59 68.60 2.03 50.13 16 4 H -0.29 -14.89 7.11 99.48 0.71 -14.18 16 5 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 6 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.26 -15.20 9.59 84.03 0.81 -14.40 16 8 H 0.07 3.92 7.89 -2.91 -0.02 3.90 16 9 N -0.61 -31.85 2.99 -699.10 -2.09 -33.94 16 10 C 0.13 5.48 6.51 86.37 0.56 6.05 16 11 C -0.12 -3.76 6.08 30.67 0.19 -3.57 16 12 C -0.11 -3.26 5.36 30.64 0.16 -3.10 16 13 C 0.13 5.17 2.60 45.09 0.12 5.28 16 14 H 0.06 2.75 7.58 -2.39 -0.02 2.74 16 15 N -0.69 -24.56 5.07 -444.56 -2.25 -26.82 16 16 C 0.57 22.22 7.78 86.90 0.68 22.90 16 17 O -0.56 -26.45 15.98 -3.74 -0.06 -26.51 16 18 C 0.05 1.54 6.76 42.32 0.29 1.82 16 19 C 0.11 3.61 10.75 85.35 0.92 4.53 16 20 N -0.44 -12.61 10.45 -187.22 -1.96 -14.56 16 21 C 0.07 1.81 6.60 40.34 0.27 2.08 16 22 C -0.11 -1.67 9.98 22.33 0.22 -1.44 16 23 C -0.06 -0.53 9.95 22.07 0.22 -0.31 16 24 C -0.08 -0.67 9.95 22.05 0.22 -0.45 16 25 C -0.09 -1.36 9.99 22.38 0.22 -1.14 16 26 C 0.06 1.36 6.59 40.48 0.27 1.63 16 27 N -0.39 -11.47 9.64 -177.29 -1.71 -13.18 16 28 C 0.18 9.24 4.89 86.36 0.42 9.66 16 29 H 0.25 15.21 8.31 -92.70 -0.77 14.43 16 30 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 2.30 7.94 -2.39 -0.02 2.29 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.42 12.46 7.94 -92.71 -0.74 11.72 16 37 H 0.19 5.64 7.62 -2.91 -0.02 5.62 16 38 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.18 -0.01 8.06 -2.91 -0.02 -0.03 16 40 H 0.18 0.03 8.06 -2.91 -0.02 0.01 16 41 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 42 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 43 H 0.05 2.81 6.04 -2.39 -0.01 2.79 16 Total: -1.00 -80.19 358.92 0.48 -79.71 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.31 Total: 16.86 kcal Atomic # 6 Polarization: 20.90 SS G_CDS: 5.97 Total: 26.88 kcal Atomic # 7 Polarization: -139.29 SS G_CDS: -7.77 Total: -147.07 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.06 Total: -26.51 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -80.19 0.48 -79.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007494520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.263 kcal (2) G-P(sol) polarization free energy of solvation -80.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds