Wall clock time and date at job start Tue Mar 31 2020 15:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 119.99791 * 2 1 4 4 H 1.48503 * 109.47167 * 90.00276 * 3 2 1 5 5 H 1.48501 * 109.47321 * 330.00189 * 3 2 1 6 6 H 1.48504 * 109.46870 * 209.99891 * 3 2 1 7 7 C 1.38804 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00693 * 18.61201 * 7 2 1 9 9 N 1.36943 * 119.99578 * 198.61244 * 7 2 1 10 10 C 1.46926 * 120.63274 * 30.99115 * 9 7 2 11 11 C 1.53195 * 108.77661 * 126.36592 * 10 9 7 12 12 C 1.53041 * 109.31060 * 54.63569 * 11 10 9 13 13 C 1.53044 * 109.54065 * 298.63765 * 12 11 10 14 14 H 1.08998 * 109.49471 * 301.41200 * 13 12 11 15 15 N 1.46495 * 109.49961 * 181.31820 * 13 12 11 16 16 C 1.34780 * 120.00548 * 154.99922 * 15 13 12 17 17 O 1.21512 * 119.99254 * 359.97438 * 16 15 13 18 18 C 1.48225 * 120.00437 * 179.97438 * 16 15 13 19 19 C 1.40575 * 119.75057 * 179.97438 * 18 16 15 20 20 N 1.31265 * 120.57199 * 179.97438 * 19 18 16 21 21 C 1.33780 * 119.80865 * 0.02562 * 20 19 18 22 22 C 1.40541 * 121.00701 * 180.02562 * 21 20 19 23 23 C 1.36075 * 119.75610 * 179.97438 * 22 21 20 24 24 C 1.39484 * 121.01614 * 0.02562 * 23 22 21 25 25 C 1.35986 * 120.97882 * 359.97438 * 24 23 22 26 26 C 1.40816 * 119.70295 * 359.97438 * 25 24 23 27 27 N 1.32168 * 119.74881 * 359.72769 * 18 16 15 28 28 C 1.46930 * 120.62663 * 210.71209 * 9 7 2 29 29 H 0.97004 * 119.99848 * 174.95695 * 1 2 3 30 30 H 1.08991 * 109.58668 * 246.15428 * 10 9 7 31 31 H 1.09001 * 109.58488 * 6.44019 * 10 9 7 32 32 H 1.08997 * 109.49935 * 174.58706 * 11 10 9 33 33 H 1.08996 * 109.49732 * 294.69282 * 11 10 9 34 34 H 1.09000 * 109.45911 * 58.65328 * 12 11 10 35 35 H 1.08997 * 109.46143 * 178.62422 * 12 11 10 36 36 H 0.97005 * 119.99741 * 334.99221 * 15 13 12 37 37 H 1.08001 * 119.71167 * 359.97438 * 19 18 16 38 38 H 1.07995 * 120.11730 * 359.95036 * 22 21 20 39 39 H 1.07995 * 119.49371 * 179.97438 * 23 22 21 40 40 H 1.07993 * 119.50694 * 180.02562 * 24 23 22 41 41 H 1.08006 * 120.14723 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.59046 * 353.41506 * 28 9 7 43 43 H 1.08998 * 109.58688 * 113.84707 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4476 2.6527 -0.7000 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.5126 -2.1129 -0.2994 9 7 3.3259 -1.2333 0.3780 10 6 3.8407 -0.2850 1.3752 11 6 4.5322 -1.0718 2.4930 12 6 5.5991 -1.9845 1.8841 13 6 4.9365 -2.9813 0.9304 14 1 4.1958 -3.5676 1.4742 15 7 5.9544 -3.8747 0.3722 16 6 5.6075 -5.1011 -0.0661 17 8 4.4505 -5.4658 0.0021 18 6 6.6374 -6.0049 -0.6315 19 6 6.2698 -7.2832 -1.0866 20 7 7.1685 -8.0964 -1.5906 21 6 8.4460 -7.7076 -1.6722 22 6 9.4287 -8.5576 -2.2077 23 6 10.7205 -8.1359 -2.2791 24 6 11.0888 -6.8686 -1.8274 25 6 10.1672 -6.0173 -1.3029 26 6 8.8198 -6.4167 -1.2130 27 7 7.8935 -5.6011 -0.7083 28 6 4.2482 -2.2197 -0.2010 29 1 -0.4850 -0.8368 -0.0738 30 1 4.5577 0.3873 0.9041 31 1 3.0150 0.2936 1.7896 32 1 5.0019 -0.3775 3.1898 33 1 3.7953 -1.6762 3.0220 34 1 6.3220 -1.3817 1.3344 35 1 6.1094 -2.5275 2.6796 36 1 6.8781 -3.5836 0.3180 37 1 5.2390 -7.5988 -1.0211 38 1 9.1596 -9.5421 -2.5609 39 1 11.4723 -8.7927 -2.6910 40 1 12.1210 -6.5587 -1.8960 41 1 10.4671 -5.0389 -0.9575 42 1 3.6911 -2.9191 -0.8243 43 1 4.9992 -1.7084 -0.8032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007494525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:43 Heat of formation + Delta-G solvation = 57.127303 kcal Electronic energy + Delta-G solvation = -26739.320334 eV Core-core repulsion = 22978.141496 eV Total energy + Delta-G solvation = -3761.178838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.87198 -39.78989 -37.99837 -37.37575 -35.35882 -34.45991 -32.59560 -31.41720 -31.04966 -30.75794 -29.20211 -26.17359 -25.02392 -24.91505 -22.87340 -22.64991 -21.74791 -20.91055 -19.79590 -18.90864 -18.71733 -17.73018 -17.28035 -16.16003 -15.95320 -15.78774 -15.36667 -15.08710 -14.80436 -14.63908 -14.29632 -14.06913 -13.93232 -13.53887 -13.47276 -12.87226 -12.45272 -12.36869 -12.30403 -12.23644 -12.11701 -12.09155 -12.07761 -11.57635 -11.13485 -10.90839 -10.63223 -10.37836 -10.07638 -9.82700 -9.61600 -9.45378 -9.41453 -9.13173 -9.06949 -9.00567 -8.43311 -7.02514 -6.20581 -3.32388 -0.38202 0.01954 1.41990 2.10210 2.90228 2.95806 3.40328 3.53041 3.54958 3.66721 3.68823 3.70820 3.83798 4.31191 4.41377 4.60168 4.60421 4.66569 4.77845 4.96856 5.06788 5.16574 5.28897 5.37908 5.40656 5.44978 5.54246 5.58756 5.73492 5.80208 5.84299 5.93206 6.02867 6.17805 6.19564 6.31113 6.40854 6.44918 6.60207 6.66631 6.73220 6.75813 6.92178 7.20711 7.55974 8.07032 8.16943 8.48513 9.10557 9.61581 10.22649 11.17635 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023687 B = 0.002627 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.776108 B =10656.417836 C =11103.380260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.016 4.016 3 Si 1.069 2.931 4 H -0.293 1.293 5 H -0.300 1.300 6 H -0.286 1.286 7 C -0.342 4.342 8 H 0.066 0.934 9 N -0.600 5.600 10 C 0.120 3.880 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.122 3.878 14 H 0.091 0.909 15 N -0.698 5.698 16 C 0.569 3.431 17 O -0.517 6.517 18 C 0.068 3.932 19 C 0.129 3.871 20 N -0.426 5.426 21 C 0.091 3.909 22 C -0.088 4.088 23 C -0.091 4.091 24 C -0.103 4.103 25 C -0.075 4.075 26 C 0.076 3.924 27 N -0.395 5.395 28 C 0.142 3.858 29 H 0.263 0.737 30 H 0.027 0.973 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.406 0.594 37 H 0.190 0.810 38 H 0.142 0.858 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.064 0.936 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.422 -14.118 -1.229 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.217 4.217 3 Si 0.901 3.099 4 H -0.221 1.221 5 H -0.228 1.228 6 H -0.212 1.212 7 C -0.471 4.471 8 H 0.084 0.916 9 N -0.324 5.324 10 C -0.005 4.005 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.017 3.983 14 H 0.110 0.890 15 N -0.348 5.348 16 C 0.351 3.649 17 O -0.392 6.392 18 C -0.089 4.089 19 C -0.046 4.046 20 N -0.139 5.139 21 C -0.034 4.034 22 C -0.107 4.107 23 C -0.111 4.111 24 C -0.123 4.123 25 C -0.094 4.094 26 C -0.051 4.051 27 N -0.113 5.113 28 C 0.015 3.985 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.241 0.759 37 H 0.206 0.794 38 H 0.160 0.840 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.161 0.839 42 H 0.082 0.918 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 24.496 -12.758 -1.183 27.645 hybrid contribution 0.688 -1.582 -0.105 1.729 sum 25.184 -14.341 -1.288 29.009 Atomic orbital electron populations 1.70893 1.06017 1.30034 1.49225 1.26260 0.96644 1.01245 0.97577 0.83720 0.74643 0.75642 0.75935 1.22135 1.22784 1.21182 1.20259 0.85331 0.95136 1.46385 0.91649 1.44279 1.07256 1.36731 1.44148 1.21447 0.97258 0.92392 0.89429 1.22000 0.97631 0.98624 0.98866 1.21677 0.98396 0.97247 0.98064 1.21762 0.89606 0.90463 0.96429 0.89045 1.45972 1.13008 1.14356 1.61467 1.17614 0.86664 0.81799 0.78839 1.90865 1.18088 1.75028 1.55185 1.22615 0.91883 0.95486 0.98912 1.24050 1.00986 0.89104 0.90439 1.68851 1.00403 1.32983 1.11683 1.19827 0.92285 0.93382 0.97878 1.20838 0.91512 0.99778 0.98593 1.21108 0.96131 0.96227 0.97616 1.21051 1.00260 0.93649 0.97339 1.20908 0.89645 1.00733 0.98104 1.19613 0.94777 0.91619 0.99077 1.68511 1.00443 1.33011 1.09309 1.21148 0.92706 0.91841 0.92832 0.92644 0.95517 0.90608 0.92075 0.91541 0.91890 0.92372 0.75923 0.79365 0.84011 0.84468 0.84419 0.83876 0.91769 0.96043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.07 13.70 55.49 0.76 -28.31 16 2 C -0.02 -0.47 5.24 -17.43 -0.09 -0.56 16 3 Si 1.07 26.62 24.73 -169.99 -4.20 22.42 16 4 H -0.29 -6.78 6.57 56.52 0.37 -6.41 16 5 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.29 -6.79 6.80 56.52 0.38 -6.41 16 7 C -0.34 -9.89 9.87 -15.06 -0.15 -10.04 16 8 H 0.07 2.05 8.06 -52.49 -0.42 1.63 16 9 N -0.60 -14.67 2.73 -172.58 -0.47 -15.14 16 10 C 0.12 2.57 4.21 -3.71 -0.02 2.56 16 11 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 12 C -0.12 -1.72 5.36 -26.69 -0.14 -1.86 16 13 C 0.12 2.12 2.59 -68.03 -0.18 1.94 16 14 H 0.09 1.81 7.58 -51.93 -0.39 1.41 16 15 N -0.70 -10.18 5.07 -54.73 -0.28 -10.46 16 16 C 0.57 8.85 7.78 -12.15 -0.09 8.75 16 17 O -0.52 -9.74 15.98 5.36 0.09 -9.65 16 18 C 0.07 0.90 6.76 -82.74 -0.56 0.34 16 19 C 0.13 1.61 10.75 -16.91 -0.18 1.43 16 20 N -0.43 -5.20 10.45 -10.52 -0.11 -5.31 16 21 C 0.09 1.00 6.60 -84.70 -0.56 0.44 16 22 C -0.09 -0.69 9.98 -39.49 -0.39 -1.08 16 23 C -0.09 -0.49 9.95 -39.89 -0.40 -0.89 16 24 C -0.10 -0.56 9.95 -39.93 -0.40 -0.96 16 25 C -0.07 -0.58 9.99 -39.42 -0.39 -0.97 16 26 C 0.08 0.83 6.60 -84.79 -0.56 0.27 16 27 N -0.39 -4.84 9.64 -7.39 -0.07 -4.91 16 28 C 0.14 3.00 6.06 -3.93 -0.02 2.97 16 29 H 0.26 8.28 8.73 -40.82 -0.36 7.92 16 30 H 0.03 0.55 7.10 -51.93 -0.37 0.18 16 31 H 0.08 1.77 4.76 -51.93 -0.25 1.52 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.41 4.99 7.94 -40.82 -0.32 4.66 16 37 H 0.19 2.12 7.62 -52.49 -0.40 1.72 16 38 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 40 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 41 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.06 1.48 7.93 -51.93 -0.41 1.07 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -34.36 353.20 -8.83 -43.20 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.57 Total: 2.90 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -4.30 Total: -0.05 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -0.17 Total: -64.13 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 26.62 SS G_CDS: -4.20 Total: 22.42 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.36 -8.83 -43.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007494525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.326 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds