Wall clock time and date at job start Tue Mar 31 2020 15:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 119.99791 * 2 1 4 4 H 1.48503 * 109.47167 * 90.00276 * 3 2 1 5 5 H 1.48501 * 109.47321 * 330.00189 * 3 2 1 6 6 H 1.48504 * 109.46870 * 209.99891 * 3 2 1 7 7 C 1.38804 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00693 * 18.61201 * 7 2 1 9 9 N 1.36943 * 119.99578 * 198.61244 * 7 2 1 10 10 C 1.46926 * 120.63274 * 30.99115 * 9 7 2 11 11 C 1.53195 * 108.77661 * 126.36592 * 10 9 7 12 12 C 1.53041 * 109.31060 * 54.63569 * 11 10 9 13 13 C 1.53044 * 109.54065 * 298.63765 * 12 11 10 14 14 H 1.08998 * 109.49471 * 301.41200 * 13 12 11 15 15 N 1.46495 * 109.49961 * 181.31820 * 13 12 11 16 16 C 1.34780 * 120.00548 * 154.99922 * 15 13 12 17 17 O 1.21512 * 119.99254 * 359.97438 * 16 15 13 18 18 C 1.48225 * 120.00437 * 179.97438 * 16 15 13 19 19 C 1.40575 * 119.75057 * 179.97438 * 18 16 15 20 20 N 1.31265 * 120.57199 * 179.97438 * 19 18 16 21 21 C 1.33780 * 119.80865 * 0.02562 * 20 19 18 22 22 C 1.40541 * 121.00701 * 180.02562 * 21 20 19 23 23 C 1.36075 * 119.75610 * 179.97438 * 22 21 20 24 24 C 1.39484 * 121.01614 * 0.02562 * 23 22 21 25 25 C 1.35986 * 120.97882 * 359.97438 * 24 23 22 26 26 C 1.40816 * 119.70295 * 359.97438 * 25 24 23 27 27 N 1.32168 * 119.74881 * 359.72769 * 18 16 15 28 28 C 1.46930 * 120.62663 * 210.71209 * 9 7 2 29 29 H 0.97004 * 119.99848 * 174.95695 * 1 2 3 30 30 H 1.08991 * 109.58668 * 246.15428 * 10 9 7 31 31 H 1.09001 * 109.58488 * 6.44019 * 10 9 7 32 32 H 1.08997 * 109.49935 * 174.58706 * 11 10 9 33 33 H 1.08996 * 109.49732 * 294.69282 * 11 10 9 34 34 H 1.09000 * 109.45911 * 58.65328 * 12 11 10 35 35 H 1.08997 * 109.46143 * 178.62422 * 12 11 10 36 36 H 0.97005 * 119.99741 * 334.99221 * 15 13 12 37 37 H 1.08001 * 119.71167 * 359.97438 * 19 18 16 38 38 H 1.07995 * 120.11730 * 359.95036 * 22 21 20 39 39 H 1.07995 * 119.49371 * 179.97438 * 23 22 21 40 40 H 1.07993 * 119.50694 * 180.02562 * 24 23 22 41 41 H 1.08006 * 120.14723 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.59046 * 353.41506 * 28 9 7 43 43 H 1.08998 * 109.58688 * 113.84707 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4476 2.6527 -0.7000 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.5126 -2.1129 -0.2994 9 7 3.3259 -1.2333 0.3780 10 6 3.8407 -0.2850 1.3752 11 6 4.5322 -1.0718 2.4930 12 6 5.5991 -1.9845 1.8841 13 6 4.9365 -2.9813 0.9304 14 1 4.1958 -3.5676 1.4742 15 7 5.9544 -3.8747 0.3722 16 6 5.6075 -5.1011 -0.0661 17 8 4.4505 -5.4658 0.0021 18 6 6.6374 -6.0049 -0.6315 19 6 6.2698 -7.2832 -1.0866 20 7 7.1685 -8.0964 -1.5906 21 6 8.4460 -7.7076 -1.6722 22 6 9.4287 -8.5576 -2.2077 23 6 10.7205 -8.1359 -2.2791 24 6 11.0888 -6.8686 -1.8274 25 6 10.1672 -6.0173 -1.3029 26 6 8.8198 -6.4167 -1.2130 27 7 7.8935 -5.6011 -0.7083 28 6 4.2482 -2.2197 -0.2010 29 1 -0.4850 -0.8368 -0.0738 30 1 4.5577 0.3873 0.9041 31 1 3.0150 0.2936 1.7896 32 1 5.0019 -0.3775 3.1898 33 1 3.7953 -1.6762 3.0220 34 1 6.3220 -1.3817 1.3344 35 1 6.1094 -2.5275 2.6796 36 1 6.8781 -3.5836 0.3180 37 1 5.2390 -7.5988 -1.0211 38 1 9.1596 -9.5421 -2.5609 39 1 11.4723 -8.7927 -2.6910 40 1 12.1210 -6.5587 -1.8960 41 1 10.4671 -5.0389 -0.9575 42 1 3.6911 -2.9191 -0.8243 43 1 4.9992 -1.7084 -0.8032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007494525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:42 Heat of formation + Delta-G solvation = 31.129138 kcal Electronic energy + Delta-G solvation = -26740.447699 eV Core-core repulsion = 22978.141496 eV Total energy + Delta-G solvation = -3762.306203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.70109 -41.04083 -39.30847 -38.31917 -36.36361 -35.92470 -34.38617 -32.63524 -32.28011 -31.68918 -30.61866 -27.08642 -26.89904 -25.77352 -24.20298 -23.55344 -23.31019 -22.13829 -21.38080 -19.86159 -19.54098 -19.33610 -18.68505 -17.29517 -17.07553 -16.84319 -16.65539 -16.14703 -15.93385 -15.70377 -15.49752 -15.41318 -15.31216 -14.98305 -14.77446 -14.48307 -14.08691 -13.70787 -13.44032 -13.03826 -12.99903 -12.95034 -12.93332 -12.75410 -12.73625 -12.55702 -12.08777 -11.77681 -11.63008 -11.52056 -11.37832 -11.22654 -10.74751 -10.39042 -10.33707 -10.09344 -9.66617 -9.13205 -8.50704 -5.61990 -1.17553 -0.74786 0.70313 1.25277 1.41395 1.57498 1.73549 1.76582 2.00278 2.53256 2.62159 2.87318 2.92136 3.03746 3.09555 3.35764 3.60108 3.64613 3.77833 3.93677 3.98865 4.07369 4.10205 4.22402 4.29607 4.34068 4.39521 4.63875 4.68506 4.77298 4.84786 4.89062 4.97373 5.00031 5.02474 5.05879 5.12653 5.16536 5.26891 5.31772 5.47452 5.65337 5.74247 5.88433 6.21460 6.26301 6.46457 6.89773 6.97145 7.49905 8.03276 8.80626 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023687 B = 0.002627 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.776108 B =10656.417836 C =11103.380260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 1.115 2.885 4 H -0.260 1.260 5 H -0.308 1.308 6 H -0.264 1.264 7 C -0.335 4.335 8 H 0.015 0.985 9 N -0.617 5.617 10 C 0.110 3.890 11 C -0.125 4.125 12 C -0.106 4.106 13 C 0.136 3.864 14 H 0.058 0.942 15 N -0.684 5.684 16 C 0.570 3.430 17 O -0.562 6.562 18 C 0.046 3.954 19 C 0.115 3.885 20 N -0.439 5.439 21 C 0.075 3.925 22 C -0.108 4.108 23 C -0.065 4.065 24 C -0.084 4.084 25 C -0.087 4.087 26 C 0.056 3.944 27 N -0.391 5.391 28 C 0.144 3.856 29 H 0.245 0.755 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.103 0.897 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.421 0.579 37 H 0.186 0.814 38 H 0.153 0.847 39 H 0.179 0.821 40 H 0.180 0.820 41 H 0.160 0.840 42 H 0.024 0.976 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.837 -13.485 -0.881 34.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.265 4.265 3 Si 0.939 3.061 4 H -0.185 1.185 5 H -0.236 1.236 6 H -0.188 1.188 7 C -0.465 4.465 8 H 0.033 0.967 9 N -0.343 5.343 10 C -0.014 4.014 11 C -0.165 4.165 12 C -0.144 4.144 13 C 0.030 3.970 14 H 0.076 0.924 15 N -0.336 5.336 16 C 0.354 3.646 17 O -0.439 6.439 18 C -0.109 4.109 19 C -0.059 4.059 20 N -0.152 5.152 21 C -0.051 4.051 22 C -0.127 4.127 23 C -0.085 4.085 24 C -0.103 4.103 25 C -0.106 4.106 26 C -0.072 4.072 27 N -0.110 5.110 28 C 0.017 3.983 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.259 0.741 37 H 0.203 0.797 38 H 0.171 0.829 39 H 0.196 0.804 40 H 0.197 0.803 41 H 0.177 0.823 42 H 0.043 0.957 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 30.960 -12.149 -0.804 33.268 hybrid contribution -1.059 -2.003 -0.345 2.292 sum 29.901 -14.152 -1.149 33.101 Atomic orbital electron populations 1.71025 1.07369 1.28924 1.52397 1.27715 0.96503 1.05166 0.97147 0.83165 0.74028 0.71003 0.77910 1.18539 1.23647 1.18834 1.20049 0.87631 0.93376 1.45426 0.96709 1.44348 1.06026 1.38193 1.45732 1.21647 0.97290 0.92441 0.90047 1.21927 0.97719 0.99021 0.97804 1.21659 0.97932 0.96486 0.98307 1.21358 0.89896 0.90624 0.95165 0.92357 1.45738 1.13116 1.13676 1.61021 1.17960 0.86574 0.82106 0.77912 1.90837 1.20190 1.75977 1.56938 1.22078 0.92016 0.95417 1.01402 1.23965 1.01207 0.89269 0.91458 1.68842 1.01284 1.33090 1.12001 1.20353 0.92295 0.94263 0.98148 1.21122 0.92025 1.00165 0.99430 1.21664 0.95692 0.96491 0.94623 1.21597 1.01658 0.92748 0.94326 1.21222 0.88348 1.02176 0.98833 1.20109 0.95895 0.91657 0.99495 1.68417 1.00019 1.33413 1.09103 1.21168 0.92180 0.90925 0.94038 0.94617 0.93166 0.92686 0.87866 0.93445 0.89268 0.89157 0.74100 0.79728 0.82924 0.80363 0.80285 0.82273 0.95711 0.94195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.24 13.70 21.65 0.30 -62.95 16 2 C -0.07 -4.36 5.24 84.86 0.44 -3.92 16 3 Si 1.12 53.52 24.73 68.60 1.70 55.22 16 4 H -0.26 -11.03 6.57 99.48 0.65 -10.38 16 5 H -0.31 -15.11 7.11 99.48 0.71 -14.40 16 6 H -0.26 -11.58 6.80 99.48 0.68 -10.90 16 7 C -0.33 -20.46 9.87 84.03 0.83 -19.63 16 8 H 0.02 1.04 8.06 -2.91 -0.02 1.01 16 9 N -0.62 -30.72 2.73 -699.92 -1.91 -32.63 16 10 C 0.11 4.48 4.21 86.36 0.36 4.84 16 11 C -0.13 -3.89 6.08 30.67 0.19 -3.70 16 12 C -0.11 -2.79 5.36 30.62 0.16 -2.63 16 13 C 0.14 4.69 2.59 44.93 0.12 4.81 16 14 H 0.06 2.42 7.58 -2.39 -0.02 2.41 16 15 N -0.68 -19.89 5.07 -445.35 -2.26 -22.15 16 16 C 0.57 18.79 7.78 86.90 0.68 19.47 16 17 O -0.56 -23.18 15.98 -3.75 -0.06 -23.24 16 18 C 0.05 1.27 6.76 42.32 0.29 1.56 16 19 C 0.12 3.11 10.75 85.35 0.92 4.03 16 20 N -0.44 -11.09 10.45 -187.21 -1.96 -13.05 16 21 C 0.08 1.58 6.60 40.35 0.27 1.85 16 22 C -0.11 -1.40 9.98 22.33 0.22 -1.18 16 23 C -0.06 -0.37 9.95 22.07 0.22 -0.15 16 24 C -0.08 -0.46 9.95 22.05 0.22 -0.24 16 25 C -0.09 -1.03 9.99 22.38 0.22 -0.81 16 26 C 0.06 1.15 6.60 40.48 0.27 1.42 16 27 N -0.39 -9.41 9.64 -177.29 -1.71 -11.12 16 28 C 0.14 6.21 6.06 86.22 0.52 6.73 16 29 H 0.24 16.55 8.73 -92.71 -0.81 15.74 16 30 H 0.05 1.85 7.10 -2.39 -0.02 1.83 16 31 H 0.05 2.47 4.76 -2.39 -0.01 2.46 16 32 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.42 9.61 7.94 -92.70 -0.74 8.88 16 37 H 0.19 4.82 7.62 -2.91 -0.02 4.80 16 38 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.18 -0.35 8.06 -2.91 -0.02 -0.37 16 40 H 0.18 -0.39 8.06 -2.91 -0.02 -0.41 16 41 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 42 H 0.02 1.22 7.93 -2.39 -0.02 1.20 16 43 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -83.53 353.20 0.22 -83.31 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.19 Total: 14.16 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 5.93 Total: 12.45 kcal Atomic # 7 Polarization: -134.36 SS G_CDS: -7.53 Total: -141.90 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.06 Total: -23.24 kcal Atomic # 14 Polarization: 53.52 SS G_CDS: 1.70 Total: 55.22 kcal Total: -83.53 0.22 -83.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007494525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.444 kcal (2) G-P(sol) polarization free energy of solvation -83.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds