Wall clock time and date at job start Tue Mar 31 2020 14:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00013 * 2 1 4 4 H 1.48501 * 109.47185 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47003 * 299.99238 * 3 2 1 6 6 H 1.48505 * 109.47700 * 59.99384 * 3 2 1 7 7 C 1.38807 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00143 * 163.08073 * 7 2 1 9 9 N 1.36937 * 120.00469 * 343.08430 * 7 2 1 10 10 C 1.46924 * 120.63337 * 151.80972 * 9 7 2 11 11 C 1.53194 * 108.77578 * 126.41478 * 10 9 7 12 12 C 1.53042 * 109.31403 * 54.63127 * 11 10 9 13 13 C 1.53043 * 109.53774 * 298.63790 * 12 11 10 14 14 H 1.08999 * 109.52309 * 301.39064 * 13 12 11 15 15 N 1.46503 * 109.49397 * 181.31370 * 13 12 11 16 16 C 1.34778 * 119.99652 * 155.15767 * 15 13 12 17 17 O 1.21545 * 120.00060 * 0.02562 * 16 15 13 18 18 C 1.47899 * 120.00055 * 179.97438 * 16 15 13 19 19 N 1.32133 * 120.03059 * 359.73378 * 18 16 15 20 20 C 1.31974 * 122.77050 * 180.26834 * 19 18 16 21 21 C 1.37782 * 121.72780 * 0.02562 * 20 19 18 22 22 C 1.40387 * 118.72702 * 359.97438 * 21 20 19 23 23 C 1.40636 * 122.27526 * 179.97438 * 22 21 20 24 24 C 1.36652 * 117.95028 * 180.02562 * 23 22 21 25 25 C 1.39387 * 119.92136 * 359.97438 * 24 23 22 26 26 N 1.31203 * 121.86021 * 0.02562 * 25 24 23 27 27 C 1.33263 * 121.22060 * 359.97438 * 26 25 24 28 28 C 1.46929 * 120.62533 * 331.82889 * 9 7 2 29 29 H 0.96997 * 119.99754 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58483 * 246.19813 * 10 9 7 31 31 H 1.08992 * 109.58893 * 6.48592 * 10 9 7 32 32 H 1.08993 * 109.50162 * 174.58484 * 11 10 9 33 33 H 1.09007 * 109.49342 * 294.68421 * 11 10 9 34 34 H 1.08996 * 109.46043 * 178.61435 * 12 11 10 35 35 H 1.09001 * 109.46142 * 58.65845 * 12 11 10 36 36 H 0.96999 * 120.00495 * 335.16224 * 15 13 12 37 37 H 1.08004 * 119.13917 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.63837 * 179.97438 * 21 20 19 39 39 H 1.07999 * 121.03113 * 0.05343 * 23 22 21 40 40 H 1.08004 * 120.03820 * 179.97438 * 24 23 22 41 41 H 1.08005 * 119.07254 * 179.97438 * 25 24 23 42 42 H 1.09005 * 109.58495 * 113.80324 * 28 9 7 43 43 H 1.08996 * 109.58945 * 353.37532 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2225 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 1.8136 -3.6528 -0.1982 11 6 2.0672 -4.6174 0.9646 12 6 0.8119 -4.7008 1.8360 13 6 0.4975 -3.3192 2.4143 14 1 1.3469 -2.9675 2.9999 15 7 -0.6861 -3.4065 3.2733 16 6 -0.8712 -2.5060 4.2589 17 8 -0.0566 -1.6212 4.4346 18 6 -2.0663 -2.5937 5.1258 19 7 -2.9555 -3.5515 4.9312 20 6 -4.0429 -3.6772 5.6685 21 6 -4.3237 -2.8075 6.6996 22 6 -3.4236 -1.7636 6.9660 23 6 -3.6366 -0.8336 7.9992 24 6 -2.7031 0.1477 8.1802 25 6 -1.5827 0.2027 7.3527 26 7 -1.3892 -0.6677 6.3903 27 6 -2.2611 -1.6491 6.1609 28 6 0.2261 -2.3399 1.2679 29 1 -0.4849 0.8400 -0.0004 30 1 1.0399 -4.0604 -0.8488 31 1 2.7329 -3.5130 -0.7668 32 1 2.3039 -5.6063 0.5721 33 1 2.9022 -4.2537 1.5635 34 1 0.9812 -5.4053 2.6503 35 1 -0.0284 -5.0409 1.2308 36 1 -1.3364 -4.1123 3.1329 37 1 -4.7310 -4.4824 5.4576 38 1 -5.2191 -2.9266 7.2916 39 1 -4.5108 -0.8934 8.6306 40 1 -2.8332 0.8799 8.9634 41 1 -0.8537 0.9844 7.5076 42 1 -0.6771 -2.6404 0.7368 43 1 0.0993 -1.3343 1.6687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007516878.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:47 Heat of formation + Delta-G solvation = 63.660796 kcal Electronic energy + Delta-G solvation = -27439.161252 eV Core-core repulsion = 23678.265728 eV Total energy + Delta-G solvation = -3760.895524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.40301 -39.17405 -38.08416 -37.09169 -33.99458 -33.83353 -32.58911 -31.64619 -30.75684 -29.91819 -28.64031 -25.53696 -25.17525 -24.26263 -23.66748 -22.11026 -21.67285 -20.19467 -19.33513 -18.71723 -17.67107 -17.60530 -16.66000 -16.28071 -15.47751 -15.27390 -14.88987 -14.68514 -14.51352 -14.12643 -13.98529 -13.79322 -13.43890 -13.32556 -13.12704 -12.94800 -12.68787 -12.40823 -12.26937 -12.21147 -11.78012 -10.98961 -10.92827 -10.67174 -10.62492 -10.39725 -10.15553 -10.09237 -9.97450 -9.85292 -9.74146 -9.54016 -9.41722 -9.05069 -8.63605 -8.35977 -8.32552 -6.56224 -5.67089 -3.10649 -0.20189 0.50410 1.51906 2.64513 3.35070 3.42194 3.48519 3.56045 3.57586 4.01408 4.09061 4.13607 4.28051 4.42140 4.54734 4.59347 4.62865 4.90633 5.14799 5.20905 5.35336 5.43772 5.46272 5.50653 5.64025 5.66237 5.72682 5.80857 5.85235 6.10229 6.18135 6.25897 6.37783 6.43184 6.51105 6.60659 6.80074 6.86592 7.04641 7.08434 7.39993 7.49543 7.79204 7.83435 7.92232 8.12679 8.56836 8.77297 9.31526 9.95734 10.50885 11.40768 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.003931 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.181954 B = 7121.673870 C = 8631.311728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.007 3.993 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.130 4.130 12 C -0.115 4.115 13 C 0.117 3.883 14 H 0.083 0.917 15 N -0.702 5.702 16 C 0.557 3.443 17 O -0.485 6.485 18 C 0.155 3.845 19 N -0.447 5.447 20 C 0.076 3.924 21 C -0.131 4.131 22 C -0.084 4.084 23 C -0.068 4.068 24 C -0.154 4.154 25 C 0.129 3.871 26 N -0.414 5.414 27 C 0.105 3.895 28 C 0.167 3.833 29 H 0.252 0.748 30 H 0.018 0.982 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.401 0.599 37 H 0.165 0.835 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.165 0.835 42 H 0.018 0.982 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.383 -7.322 17.278 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.192 4.192 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.385 4.385 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.170 4.170 12 C -0.154 4.154 13 C 0.012 3.988 14 H 0.101 0.899 15 N -0.354 5.354 16 C 0.339 3.661 17 O -0.356 6.356 18 C 0.001 3.999 19 N -0.160 5.160 20 C -0.070 4.070 21 C -0.151 4.151 22 C -0.091 4.091 23 C -0.094 4.094 24 C -0.176 4.176 25 C -0.045 4.045 26 N -0.122 5.122 27 C -0.020 4.020 28 C 0.040 3.960 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.235 0.765 37 H 0.182 0.818 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.160 0.840 41 H 0.183 0.817 42 H 0.036 0.964 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.064 -7.206 16.097 19.830 hybrid contribution -1.144 1.074 1.262 2.014 sum -10.208 -6.132 17.359 21.051 Atomic orbital electron populations 1.70027 1.05361 1.25354 1.53497 1.25032 0.95232 0.98454 1.00497 0.86253 0.79421 0.84096 0.77179 1.20183 1.21839 1.21423 1.19181 0.92558 0.84782 1.41951 0.91596 1.43975 1.36077 1.01763 1.49311 1.20955 0.97699 0.86904 0.92858 1.21999 0.97000 0.99268 0.98755 1.21669 0.98896 0.96031 0.98763 1.22004 0.86897 0.96993 0.92875 0.89914 1.45922 1.26189 1.31077 1.32213 1.17525 0.84558 0.83125 0.80896 1.90908 1.42767 1.32641 1.69288 1.21790 0.94684 0.90075 0.93316 1.67382 1.02223 1.20043 1.26350 1.22578 0.94008 0.98697 0.91728 1.22332 0.99464 0.94446 0.98904 1.18974 0.95739 0.97232 0.97163 1.21386 0.99249 0.93146 0.95597 1.22135 0.95335 0.99241 1.00849 1.23369 0.95615 0.96126 0.89373 1.68361 1.27233 1.01000 1.15562 1.19522 0.91542 0.95204 0.95730 1.21094 0.88716 0.98852 0.87316 0.93773 0.96434 0.92658 0.92655 0.92119 0.93055 0.92175 0.76497 0.81773 0.83796 0.83851 0.83979 0.81739 0.96442 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 11.20 55.49 0.62 -27.10 16 2 C 0.01 0.20 4.92 -17.43 -0.09 0.12 16 3 Si 0.90 23.12 29.59 -169.99 -5.03 18.09 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 7 C -0.26 -7.38 9.58 -15.06 -0.14 -7.53 16 8 H 0.07 1.86 7.89 -52.49 -0.41 1.45 16 9 N -0.59 -15.51 2.99 -172.33 -0.52 -16.03 16 10 C 0.14 3.06 6.52 -3.71 -0.02 3.04 16 11 C -0.13 -2.31 6.08 -26.61 -0.16 -2.47 16 12 C -0.12 -1.99 5.35 -26.69 -0.14 -2.14 16 13 C 0.12 2.46 2.60 -67.81 -0.18 2.28 16 14 H 0.08 1.93 7.58 -51.93 -0.39 1.54 16 15 N -0.70 -13.20 5.07 -54.62 -0.28 -13.48 16 16 C 0.56 11.37 7.77 -12.30 -0.10 11.28 16 17 O -0.49 -11.75 14.87 5.33 0.08 -11.67 16 18 C 0.15 2.66 6.81 -82.55 -0.56 2.10 16 19 N -0.45 -6.38 9.48 -9.55 -0.09 -6.47 16 20 C 0.08 0.79 11.12 -17.66 -0.20 0.59 16 21 C -0.13 -1.21 9.93 -38.94 -0.39 -1.59 16 22 C -0.08 -0.99 5.75 -106.80 -0.61 -1.61 16 23 C -0.07 -0.59 9.94 -39.25 -0.39 -0.98 16 24 C -0.15 -1.33 10.03 -39.73 -0.40 -1.73 16 25 C 0.13 1.57 11.14 -17.39 -0.19 1.37 16 26 N -0.41 -7.08 8.49 -10.75 -0.09 -7.17 16 27 C 0.10 1.69 6.61 -84.62 -0.56 1.13 16 28 C 0.17 4.29 4.88 -3.71 -0.02 4.27 16 29 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 1.16 7.93 -51.93 -0.41 0.74 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.40 6.48 7.94 -40.82 -0.32 6.16 16 37 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 41 H 0.17 1.56 8.06 -52.48 -0.42 1.14 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 2.85 6.06 -51.93 -0.31 2.53 16 LS Contribution 356.92 15.07 5.38 5.38 Total: -1.00 -36.85 356.92 -9.72 -46.57 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.64 Total: 3.75 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -4.15 Total: 8.14 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -0.35 Total: -70.25 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.08 Total: -11.67 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.03 Total: 18.09 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.85 -9.72 -46.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007516878.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.229 kcal (2) G-P(sol) polarization free energy of solvation -36.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds