Wall clock time and date at job start Tue Mar 31 2020 14:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00013 * 2 1 4 4 H 1.48501 * 109.47185 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47003 * 299.99238 * 3 2 1 6 6 H 1.48505 * 109.47700 * 59.99384 * 3 2 1 7 7 C 1.38807 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00143 * 163.08073 * 7 2 1 9 9 N 1.36937 * 120.00469 * 343.08430 * 7 2 1 10 10 C 1.46924 * 120.63337 * 151.80972 * 9 7 2 11 11 C 1.53194 * 108.77578 * 126.41478 * 10 9 7 12 12 C 1.53042 * 109.31403 * 54.63127 * 11 10 9 13 13 C 1.53043 * 109.53774 * 298.63790 * 12 11 10 14 14 H 1.08999 * 109.52309 * 301.39064 * 13 12 11 15 15 N 1.46503 * 109.49397 * 181.31370 * 13 12 11 16 16 C 1.34778 * 119.99652 * 155.15767 * 15 13 12 17 17 O 1.21545 * 120.00060 * 0.02562 * 16 15 13 18 18 C 1.47899 * 120.00055 * 179.97438 * 16 15 13 19 19 N 1.32133 * 120.03059 * 359.73378 * 18 16 15 20 20 C 1.31974 * 122.77050 * 180.26834 * 19 18 16 21 21 C 1.37782 * 121.72780 * 0.02562 * 20 19 18 22 22 C 1.40387 * 118.72702 * 359.97438 * 21 20 19 23 23 C 1.40636 * 122.27526 * 179.97438 * 22 21 20 24 24 C 1.36652 * 117.95028 * 180.02562 * 23 22 21 25 25 C 1.39387 * 119.92136 * 359.97438 * 24 23 22 26 26 N 1.31203 * 121.86021 * 0.02562 * 25 24 23 27 27 C 1.33263 * 121.22060 * 359.97438 * 26 25 24 28 28 C 1.46929 * 120.62533 * 331.82889 * 9 7 2 29 29 H 0.96997 * 119.99754 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58483 * 246.19813 * 10 9 7 31 31 H 1.08992 * 109.58893 * 6.48592 * 10 9 7 32 32 H 1.08993 * 109.50162 * 174.58484 * 11 10 9 33 33 H 1.09007 * 109.49342 * 294.68421 * 11 10 9 34 34 H 1.08996 * 109.46043 * 178.61435 * 12 11 10 35 35 H 1.09001 * 109.46142 * 58.65845 * 12 11 10 36 36 H 0.96999 * 120.00495 * 335.16224 * 15 13 12 37 37 H 1.08004 * 119.13917 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.63837 * 179.97438 * 21 20 19 39 39 H 1.07999 * 121.03113 * 0.05343 * 23 22 21 40 40 H 1.08004 * 120.03820 * 179.97438 * 24 23 22 41 41 H 1.08005 * 119.07254 * 179.97438 * 25 24 23 42 42 H 1.09005 * 109.58495 * 113.80324 * 28 9 7 43 43 H 1.08996 * 109.58945 * 353.37532 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2225 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 1.8136 -3.6528 -0.1982 11 6 2.0672 -4.6174 0.9646 12 6 0.8119 -4.7008 1.8360 13 6 0.4975 -3.3192 2.4143 14 1 1.3469 -2.9675 2.9999 15 7 -0.6861 -3.4065 3.2733 16 6 -0.8712 -2.5060 4.2589 17 8 -0.0566 -1.6212 4.4346 18 6 -2.0663 -2.5937 5.1258 19 7 -2.9555 -3.5515 4.9312 20 6 -4.0429 -3.6772 5.6685 21 6 -4.3237 -2.8075 6.6996 22 6 -3.4236 -1.7636 6.9660 23 6 -3.6366 -0.8336 7.9992 24 6 -2.7031 0.1477 8.1802 25 6 -1.5827 0.2027 7.3527 26 7 -1.3892 -0.6677 6.3903 27 6 -2.2611 -1.6491 6.1609 28 6 0.2261 -2.3399 1.2679 29 1 -0.4849 0.8400 -0.0004 30 1 1.0399 -4.0604 -0.8488 31 1 2.7329 -3.5130 -0.7668 32 1 2.3039 -5.6063 0.5721 33 1 2.9022 -4.2537 1.5635 34 1 0.9812 -5.4053 2.6503 35 1 -0.0284 -5.0409 1.2308 36 1 -1.3364 -4.1123 3.1329 37 1 -4.7310 -4.4824 5.4576 38 1 -5.2191 -2.9266 7.2916 39 1 -4.5108 -0.8934 8.6306 40 1 -2.8332 0.8799 8.9634 41 1 -0.8537 0.9844 7.5076 42 1 -0.6771 -2.6404 0.7368 43 1 0.0993 -1.3343 1.6687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007516878.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:46 Heat of formation + Delta-G solvation = 36.039299 kcal Electronic energy + Delta-G solvation = -27440.359010 eV Core-core repulsion = 23678.265728 eV Total energy + Delta-G solvation = -3762.093282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.34790 -40.66901 -39.12932 -38.74626 -35.80099 -34.76583 -34.41800 -32.53474 -32.01378 -31.66926 -30.25331 -27.27075 -26.54446 -25.12707 -24.79901 -23.94998 -23.18255 -21.59191 -21.02779 -19.75435 -18.79236 -18.71490 -18.54359 -17.33773 -17.07982 -16.72030 -16.37723 -15.84261 -15.69286 -15.44919 -15.37326 -15.24526 -15.13728 -14.67167 -14.34263 -14.13268 -14.03555 -13.98915 -13.71657 -13.48514 -13.13462 -12.97374 -12.68816 -12.51528 -12.27476 -12.05779 -11.83315 -11.72136 -11.63036 -11.28667 -11.24432 -10.96955 -10.59186 -10.39146 -10.18150 -10.08383 -9.47525 -8.71286 -7.90983 -5.37706 -1.11852 -0.34257 0.64763 1.37524 1.43083 1.51689 1.66408 2.02621 2.20129 2.47270 3.02567 3.06367 3.21624 3.26235 3.42171 3.64008 3.71333 3.77807 3.92040 3.94201 4.12293 4.21296 4.24417 4.32756 4.46393 4.47378 4.56693 4.60690 4.64688 4.80637 4.91390 4.93573 5.07554 5.08144 5.18771 5.20178 5.30410 5.35101 5.45246 5.51596 5.59891 5.61552 5.75369 6.33805 6.46883 6.69008 6.96271 7.09003 7.29728 7.82639 8.32631 9.14068 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.003931 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.181954 B = 7121.673870 C = 8631.311728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.052 4.052 3 Si 0.963 3.037 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.300 1.300 7 C -0.264 4.264 8 H 0.071 0.929 9 N -0.610 5.610 10 C 0.135 3.865 11 C -0.120 4.120 12 C -0.106 4.106 13 C 0.132 3.868 14 H 0.051 0.949 15 N -0.695 5.695 16 C 0.551 3.449 17 O -0.542 6.542 18 C 0.097 3.903 19 N -0.449 5.449 20 C 0.056 3.944 21 C -0.087 4.087 22 C -0.105 4.105 23 C -0.047 4.047 24 C -0.153 4.153 25 C 0.124 3.876 26 N -0.493 5.493 27 C 0.081 3.919 28 C 0.183 3.817 29 H 0.246 0.754 30 H 0.022 0.978 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.414 0.586 37 H 0.207 0.793 38 H 0.202 0.798 39 H 0.198 0.802 40 H 0.188 0.812 41 H 0.175 0.825 42 H -0.004 1.004 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.771 -9.133 19.915 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.247 4.247 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.210 1.210 6 H -0.228 1.228 7 C -0.394 4.394 8 H 0.089 0.911 9 N -0.333 5.333 10 C 0.010 3.990 11 C -0.159 4.159 12 C -0.144 4.144 13 C 0.026 3.974 14 H 0.070 0.930 15 N -0.347 5.347 16 C 0.336 3.664 17 O -0.417 6.417 18 C -0.053 4.053 19 N -0.162 5.162 20 C -0.092 4.092 21 C -0.107 4.107 22 C -0.113 4.113 23 C -0.073 4.073 24 C -0.174 4.174 25 C -0.050 4.050 26 N -0.202 5.202 27 C -0.043 4.043 28 C 0.056 3.944 29 H 0.054 0.946 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.251 0.749 37 H 0.224 0.776 38 H 0.219 0.781 39 H 0.215 0.785 40 H 0.205 0.795 41 H 0.192 0.808 42 H 0.015 0.985 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.433 -9.076 18.715 23.735 hybrid contribution -0.556 1.631 0.578 1.818 sum -11.989 -7.444 19.293 23.904 Atomic orbital electron populations 1.70196 1.06904 1.25457 1.55358 1.25840 0.96014 1.01776 1.01116 0.85269 0.79061 0.80000 0.76594 1.18364 1.20986 1.22757 1.19568 0.92966 0.86128 1.40736 0.91124 1.44264 1.35923 1.03012 1.50146 1.21198 0.97694 0.85518 0.94567 1.21902 0.96732 1.00258 0.97024 1.21643 0.99290 0.93690 0.99774 1.21568 0.86680 0.98271 0.90930 0.93036 1.45778 1.25888 1.31351 1.31672 1.18211 0.85271 0.81989 0.80956 1.90844 1.45159 1.34695 1.70967 1.21152 0.95227 0.93544 0.95405 1.67244 1.02810 1.19016 1.27123 1.23364 0.93403 1.00454 0.91987 1.23002 0.99407 0.91209 0.97090 1.19399 0.94868 0.99225 0.97778 1.22021 1.00193 0.90979 0.94071 1.22517 0.93708 1.00297 1.00849 1.23865 0.97245 0.95151 0.88705 1.68251 1.29852 1.03361 1.18713 1.19700 0.93267 0.94974 0.96406 1.20722 0.88085 0.97228 0.88397 0.94552 0.96014 0.92291 0.88122 0.92923 0.89761 0.90791 0.74915 0.77614 0.78110 0.78526 0.79518 0.80775 0.98549 0.94161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.38 11.20 21.65 0.24 -61.14 16 2 C -0.05 -3.23 4.92 84.86 0.42 -2.81 16 3 Si 0.96 49.83 29.59 68.60 2.03 51.86 16 4 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.30 -16.00 7.11 99.48 0.71 -15.30 16 7 C -0.26 -15.91 9.58 84.03 0.81 -15.10 16 8 H 0.07 4.09 7.89 -2.91 -0.02 4.07 16 9 N -0.61 -33.58 2.99 -699.11 -2.09 -35.68 16 10 C 0.13 5.81 6.52 86.36 0.56 6.38 16 11 C -0.12 -4.05 6.08 30.67 0.19 -3.86 16 12 C -0.11 -3.56 5.35 30.62 0.16 -3.39 16 13 C 0.13 5.83 2.60 45.07 0.12 5.95 16 14 H 0.05 2.60 7.58 -2.39 -0.02 2.59 16 15 N -0.69 -28.01 5.07 -444.99 -2.26 -30.27 16 16 C 0.55 24.76 7.77 86.80 0.67 25.44 16 17 O -0.54 -29.41 14.87 -3.86 -0.06 -29.46 16 18 C 0.10 3.57 6.81 42.46 0.29 3.86 16 19 N -0.45 -12.83 9.48 -184.13 -1.75 -14.58 16 20 C 0.06 0.99 11.12 84.56 0.94 1.93 16 21 C -0.09 -1.20 9.93 22.69 0.23 -0.98 16 22 C -0.11 -2.23 5.75 -21.27 -0.12 -2.35 16 23 C -0.05 -0.61 9.94 22.48 0.22 -0.39 16 24 C -0.15 -2.21 10.03 22.18 0.22 -1.98 16 25 C 0.12 3.09 11.14 85.06 0.95 4.04 16 26 N -0.49 -18.23 8.49 -187.92 -1.60 -19.82 16 27 C 0.08 2.71 6.61 40.62 0.27 2.98 16 28 C 0.18 10.08 4.88 86.36 0.42 10.50 16 29 H 0.25 15.72 8.31 -92.71 -0.77 14.95 16 30 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 32 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.41 14.00 7.94 -92.71 -0.74 13.27 16 37 H 0.21 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.20 0.48 8.06 -2.91 -0.02 0.46 16 39 H 0.20 0.43 8.06 -2.91 -0.02 0.41 16 40 H 0.19 0.94 8.06 -2.91 -0.02 0.92 16 41 H 0.18 3.55 8.06 -2.91 -0.02 3.53 16 42 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 43 H 0.04 2.65 6.06 -2.39 -0.01 2.64 16 Total: -1.00 -93.93 356.92 1.17 -92.76 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.31 Total: 16.13 kcal Atomic # 6 Polarization: 23.86 SS G_CDS: 6.34 Total: 30.20 kcal Atomic # 7 Polarization: -154.04 SS G_CDS: -7.45 Total: -161.49 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.06 Total: -29.46 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.03 Total: 51.86 kcal Total: -93.93 1.17 -92.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007516878.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.797 kcal (2) G-P(sol) polarization free energy of solvation -93.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds