Wall clock time and date at job start Tue Mar 31 2020 15:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99848 * 2 1 4 4 H 1.48500 * 109.47342 * 269.99732 * 3 2 1 5 5 H 1.48498 * 109.47084 * 30.00330 * 3 2 1 6 6 H 1.48504 * 109.46733 * 150.00147 * 3 2 1 7 7 C 1.38812 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99872 * 197.35724 * 7 2 1 9 9 N 1.36939 * 120.00283 * 17.36013 * 7 2 1 10 10 C 1.46930 * 120.63263 * 207.68165 * 9 7 2 11 11 C 1.53190 * 108.77309 * 233.60758 * 10 9 7 12 12 C 1.53045 * 109.31125 * 305.36036 * 11 10 9 13 13 C 1.53035 * 109.53570 * 61.37173 * 12 11 10 14 14 H 1.09003 * 109.50315 * 58.61262 * 13 12 11 15 15 N 1.46507 * 109.49814 * 178.68013 * 13 12 11 16 16 C 1.34774 * 120.00021 * 204.99894 * 15 13 12 17 17 O 1.21590 * 120.00282 * 359.97438 * 16 15 13 18 18 C 1.47511 * 119.99865 * 180.02562 * 16 15 13 19 19 C 1.38678 * 120.33813 * 0.02562 * 18 16 15 20 20 C 1.38984 * 120.62806 * 179.72834 * 19 18 16 21 21 C 1.36216 * 121.14597 * 0.51016 * 20 19 18 22 22 C 1.40686 * 120.16831 * 359.49382 * 21 20 19 23 23 N 1.33758 * 120.97556 * 180.22847 * 22 21 20 24 24 C 1.31337 * 119.73237 * 180.02562 * 23 22 21 25 25 C 1.39643 * 120.68124 * 359.97438 * 24 23 22 26 26 N 1.31458 * 120.64542 * 0.02562 * 25 24 23 27 27 C 1.33486 * 119.71775 * 359.97438 * 26 25 24 28 28 C 1.46931 * 120.62876 * 27.67900 * 9 7 2 29 29 H 0.96998 * 120.00049 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.58384 * 113.81567 * 10 9 7 31 31 H 1.09000 * 109.58410 * 353.39414 * 10 9 7 32 32 H 1.09000 * 109.49637 * 185.41628 * 11 10 9 33 33 H 1.08992 * 109.50028 * 65.31654 * 11 10 9 34 34 H 1.08996 * 109.46068 * 301.35028 * 12 11 10 35 35 H 1.09003 * 109.44495 * 181.37837 * 12 11 10 36 36 H 0.96998 * 119.99504 * 25.00459 * 15 13 12 37 37 H 1.08000 * 119.68142 * 359.97391 * 19 18 16 38 38 H 1.08005 * 119.42597 * 180.25809 * 20 19 18 39 39 H 1.08004 * 119.91753 * 179.76401 * 21 20 19 40 40 H 1.07995 * 119.65906 * 179.97438 * 24 23 22 41 41 H 1.08001 * 119.68088 * 179.97438 * 25 24 23 42 42 H 1.08997 * 109.58457 * 6.60332 * 28 9 7 43 43 H 1.09005 * 109.58529 * 246.18244 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0533 -1.2235 0.2785 9 7 1.3724 -2.3609 -0.3549 10 6 1.8194 -3.6549 0.1787 11 6 2.0747 -4.6093 -0.9921 12 6 0.8190 -4.6887 -1.8634 13 6 0.5010 -3.3032 -2.4303 14 1 1.3494 -2.9452 -3.0135 15 7 -0.6828 -3.3863 -3.2895 16 6 -0.8690 -2.4802 -4.2696 17 8 -0.0548 -1.5935 -4.4406 18 6 -2.0612 -2.5636 -5.1343 19 6 -2.9951 -3.5710 -4.9445 20 6 -4.1233 -3.6520 -5.7521 21 6 -4.3380 -2.7550 -6.7545 22 6 -3.4171 -1.7164 -6.9832 23 7 -3.6142 -0.8242 -7.9600 24 6 -2.7383 0.1354 -8.1522 25 6 -1.6020 0.2349 -7.3466 26 7 -1.3876 -0.6307 -6.3807 27 6 -2.2643 -1.6143 -6.1669 28 6 0.2279 -2.3339 -1.2759 29 1 -0.4850 0.8400 0.0004 30 1 1.0470 -4.0694 0.8264 31 1 2.7400 -3.5178 0.7459 32 1 2.3139 -5.6008 -0.6076 33 1 2.9084 -4.2388 -1.5883 34 1 -0.0201 -5.0357 -1.2604 35 1 0.9899 -5.3861 -2.6835 36 1 -1.3325 -4.0935 -3.1528 37 1 -2.8461 -4.2973 -4.1592 38 1 -4.8403 -4.4422 -5.5845 39 1 -5.2198 -2.8388 -7.3726 40 1 -2.8984 0.8549 -8.9415 41 1 -0.8920 1.0301 -7.5192 42 1 0.0985 -1.3253 -1.6684 43 1 -0.6743 -2.6408 -0.7467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008972661.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:46 Heat of formation + Delta-G solvation = 66.840386 kcal Electronic energy + Delta-G solvation = -27451.416755 eV Core-core repulsion = 23690.659108 eV Total energy + Delta-G solvation = -3760.757647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55962 -39.40213 -37.60377 -36.99576 -34.75237 -34.07699 -32.68908 -31.10127 -30.97084 -29.96372 -28.57736 -25.60076 -25.23541 -24.31709 -23.78027 -22.15989 -21.61763 -20.15661 -19.37584 -18.83396 -18.30141 -17.04856 -16.70308 -16.37414 -15.44040 -15.31639 -15.17578 -14.85347 -14.40110 -14.16873 -14.11186 -13.94208 -13.60163 -13.33601 -12.97947 -12.43675 -12.38777 -12.27978 -12.03463 -11.95925 -11.86570 -11.69380 -11.60792 -10.98285 -10.70627 -10.69594 -10.45868 -10.21201 -9.96098 -9.90600 -9.59943 -9.48345 -9.18208 -8.90804 -8.76396 -8.45323 -8.38783 -6.62589 -5.71863 -3.15065 -0.13125 0.38829 1.59839 2.48946 3.37435 3.45965 3.47201 3.52813 3.54015 3.83974 4.01896 4.03971 4.18357 4.48996 4.57155 4.63287 4.79653 4.89074 5.04105 5.17172 5.37248 5.42777 5.51430 5.56859 5.58690 5.66155 5.69598 5.75522 5.93541 5.99468 6.10954 6.16071 6.35692 6.40034 6.43958 6.52569 6.72224 6.79550 6.96661 6.98973 7.15180 7.33815 7.66989 7.77043 7.86766 7.97013 8.51638 8.71214 9.26660 9.90861 10.45346 11.36040 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012939 B = 0.003915 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.533928 B = 7150.265262 C = 8656.752293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.008 3.992 3 Si 0.901 3.099 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.257 4.257 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.119 3.881 14 H 0.083 0.917 15 N -0.718 5.718 16 C 0.545 3.455 17 O -0.488 6.488 18 C -0.084 4.084 19 C -0.068 4.068 20 C -0.105 4.105 21 C -0.066 4.066 22 C 0.070 3.930 23 N -0.429 5.429 24 C 0.075 3.925 25 C 0.074 3.926 26 N -0.381 5.381 27 C 0.111 3.889 28 C 0.167 3.833 29 H 0.253 0.747 30 H 0.018 0.982 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.388 0.612 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.175 0.825 41 H 0.176 0.824 42 H 0.095 0.905 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.989 -9.128 -14.437 19.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.191 4.191 3 Si 0.731 3.269 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.014 3.986 14 H 0.101 0.899 15 N -0.371 5.371 16 C 0.329 3.671 17 O -0.361 6.361 18 C -0.089 4.089 19 C -0.089 4.089 20 C -0.125 4.125 21 C -0.086 4.086 22 C -0.054 4.054 23 N -0.144 5.144 24 C -0.100 4.100 25 C -0.102 4.102 26 N -0.094 5.094 27 C -0.014 4.014 28 C 0.040 3.960 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.222 0.778 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.192 0.808 41 H 0.193 0.807 42 H 0.113 0.887 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -8.513 -8.490 -14.387 18.749 hybrid contribution -0.056 0.618 -0.008 0.621 sum -8.569 -7.872 -14.395 18.510 Atomic orbital electron populations 1.70012 1.05363 1.25520 1.53359 1.25016 0.95235 0.98465 1.00427 0.86310 0.79053 0.83677 0.77857 1.21202 1.21817 1.20405 1.19155 0.92743 0.84861 1.41906 0.91576 1.43972 1.36036 1.01610 1.49495 1.20956 0.97707 0.86882 0.92867 1.22003 0.96980 0.99321 0.98771 1.21678 0.98928 0.96038 0.98742 1.21978 0.86882 0.96871 0.92875 0.89902 1.46012 1.26451 1.30999 1.33620 1.17826 0.85582 0.82880 0.80773 1.90900 1.43684 1.32388 1.69120 1.20146 0.96964 0.95413 0.96383 1.21570 0.92708 0.96373 0.98221 1.20915 0.97463 0.99332 0.94765 1.20929 0.98104 0.92169 0.97407 1.19535 0.95092 0.96522 0.94242 1.68683 1.28130 1.02012 1.15541 1.24096 0.91092 0.95845 0.98987 1.24312 0.97010 0.97771 0.91076 1.69084 1.26132 1.00144 1.14052 1.19348 0.91973 0.94585 0.95526 1.21098 0.88664 0.99070 0.87190 0.93693 0.96423 0.92629 0.92634 0.92099 0.92269 0.93096 0.77765 0.84171 0.84041 0.84050 0.80814 0.80730 0.88672 0.96552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 11.19 55.49 0.62 -26.73 16 2 C 0.01 0.22 4.91 -17.43 -0.09 0.14 16 3 Si 0.90 22.95 29.59 -169.99 -5.03 17.92 16 4 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.26 -7.34 9.59 -15.06 -0.14 -7.48 16 8 H 0.07 1.84 7.89 -52.49 -0.41 1.43 16 9 N -0.59 -15.16 3.00 -172.32 -0.52 -15.68 16 10 C 0.14 2.97 6.52 -3.71 -0.02 2.95 16 11 C -0.13 -2.22 6.08 -26.61 -0.16 -2.38 16 12 C -0.12 -1.86 5.35 -26.69 -0.14 -2.00 16 13 C 0.12 2.36 2.60 -67.81 -0.18 2.18 16 14 H 0.08 1.88 7.58 -51.93 -0.39 1.49 16 15 N -0.72 -12.04 5.03 -54.74 -0.28 -12.32 16 16 C 0.55 10.34 7.73 -12.48 -0.10 10.24 16 17 O -0.49 -11.59 14.85 5.29 0.08 -11.51 16 18 C -0.08 -1.30 5.90 -104.62 -0.62 -1.92 16 19 C -0.07 -0.73 9.52 -39.14 -0.37 -1.10 16 20 C -0.10 -0.90 9.93 -40.03 -0.40 -1.30 16 21 C -0.07 -0.68 9.97 -39.39 -0.39 -1.07 16 22 C 0.07 0.95 6.59 -84.82 -0.56 0.39 16 23 N -0.43 -5.40 10.46 -10.82 -0.11 -5.51 16 24 C 0.08 0.78 11.21 -17.24 -0.19 0.59 16 25 C 0.07 0.92 11.22 -17.19 -0.19 0.72 16 26 N -0.38 -6.59 8.56 -10.59 -0.09 -6.68 16 27 C 0.11 1.79 6.60 -84.53 -0.56 1.24 16 28 C 0.17 4.14 4.89 -3.71 -0.02 4.12 16 29 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 1.14 7.93 -51.93 -0.41 0.72 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.39 4.92 6.63 -40.82 -0.27 4.65 16 37 H 0.14 1.09 6.37 -52.49 -0.33 0.76 16 38 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 39 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 40 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.18 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.10 2.81 6.04 -51.93 -0.31 2.49 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -37.54 354.42 -9.62 -47.16 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.50 Total: 2.70 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -4.13 Total: 5.31 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: -0.37 Total: -66.91 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.51 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.03 Total: 17.92 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.54 -9.62 -47.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008972661.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.999 kcal (2) G-P(sol) polarization free energy of solvation -37.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds