Wall clock time and date at job start Tue Mar 31 2020 14:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99977 * 2 1 4 4 H 1.48497 * 109.46812 * 270.00210 * 3 2 1 5 5 H 1.48507 * 109.46940 * 29.99858 * 3 2 1 6 6 H 1.48497 * 109.47456 * 149.99774 * 3 2 1 7 7 C 1.38813 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 197.35250 * 7 2 1 9 9 N 1.36936 * 120.00195 * 17.36157 * 7 2 1 10 10 C 1.46931 * 120.63067 * 27.67060 * 9 7 2 11 11 C 1.53187 * 108.77328 * 126.41445 * 10 9 7 12 12 C 1.53036 * 109.34322 * 54.61625 * 11 10 9 13 13 C 1.53035 * 109.54208 * 298.68633 * 12 11 10 14 14 H 1.09003 * 109.49500 * 301.34856 * 13 12 11 15 15 N 1.46501 * 109.49926 * 181.28066 * 13 12 11 16 16 C 1.34777 * 119.99852 * 155.12761 * 15 13 12 17 17 O 1.21550 * 119.99891 * 359.97438 * 16 15 13 18 18 C 1.47861 * 119.99800 * 180.02562 * 16 15 13 19 19 C 1.40620 * 119.75602 * 359.97438 * 18 16 15 20 20 C 1.35736 * 120.83558 * 180.02562 * 19 18 16 21 21 C 1.40703 * 120.08025 * 0.02562 * 20 19 18 22 22 N 1.33797 * 120.85389 * 180.02562 * 21 20 19 23 23 C 1.31334 * 119.76090 * 179.97438 * 22 21 20 24 24 C 1.39762 * 120.70943 * 359.97438 * 23 22 21 25 25 N 1.31270 * 120.67493 * 359.97438 * 24 23 22 26 26 C 1.33830 * 119.73675 * 0.04373 * 25 24 23 27 27 C 1.38416 * 119.75508 * 179.73076 * 18 16 15 28 28 C 1.46924 * 120.62987 * 207.68989 * 9 7 2 29 29 H 0.97006 * 120.00403 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.58722 * 6.62827 * 10 9 7 31 31 H 1.09000 * 109.69982 * 246.27127 * 10 9 7 32 32 H 1.09003 * 109.49294 * 174.58737 * 11 10 9 33 33 H 1.09000 * 109.49839 * 294.64876 * 11 10 9 34 34 H 1.09004 * 109.45659 * 58.67099 * 12 11 10 35 35 H 1.09004 * 109.46253 * 178.62448 * 12 11 10 36 36 H 0.96999 * 119.99723 * 335.12950 * 15 13 12 37 37 H 1.07995 * 119.58212 * 0.02562 * 19 18 16 38 38 H 1.08000 * 119.95586 * 180.02562 * 20 19 18 39 39 H 1.07999 * 119.64801 * 180.02562 * 23 22 21 40 40 H 1.08002 * 119.66329 * 180.02562 * 24 23 22 41 41 H 1.07994 * 120.24988 * 359.97438 * 27 18 16 42 42 H 1.08995 * 109.58607 * 353.37922 * 28 9 7 43 43 H 1.09001 * 109.58385 * 113.65673 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3528 10 6 0.2277 -2.3350 -1.2737 11 6 0.5005 -3.3056 -2.4270 12 6 0.8189 -4.6906 -1.8594 13 6 2.0741 -4.6104 -0.9876 14 1 2.9083 -4.2410 -1.5840 15 7 2.3955 -5.9425 -0.4694 16 6 3.6619 -6.2414 -0.1181 17 8 4.5374 -5.4059 -0.2317 18 6 3.9864 -7.5860 0.4043 19 6 2.9697 -8.5488 0.5330 20 6 3.2429 -9.7897 1.0105 21 6 4.5564 -10.1278 1.3851 22 7 4.8432 -11.3464 1.8571 23 6 6.0767 -11.6391 2.1999 24 6 7.0959 -10.6907 2.0766 25 7 6.8399 -9.4887 1.6152 26 6 5.5907 -9.1663 1.2596 27 6 5.2897 -7.8893 0.7583 28 6 1.8192 -3.6546 0.1821 29 1 -0.4851 0.8401 -0.0004 30 1 0.0985 -1.3268 -1.6674 31 1 -0.6758 -2.6397 -0.7456 32 1 -0.3803 -3.3679 -3.0661 33 1 1.3488 -2.9479 -3.0106 34 1 -0.0201 -5.0374 -1.2561 35 1 0.9894 -5.3887 -2.6791 36 1 1.6969 -6.6094 -0.3792 37 1 1.9586 -8.2979 0.2483 38 1 2.4511 -10.5183 1.1031 39 1 6.3063 -12.6234 2.5803 40 1 8.1045 -10.9496 2.3631 41 1 6.0684 -7.1483 0.6538 42 1 2.7399 -3.5171 0.7490 43 1 1.0478 -4.0672 0.8324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009452500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:32 Heat of formation + Delta-G solvation = 57.227485 kcal Electronic energy + Delta-G solvation = -26546.313048 eV Core-core repulsion = 22785.138555 eV Total energy + Delta-G solvation = -3761.174493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.77596 -39.94354 -37.78407 -36.97024 -35.17969 -34.43134 -32.56082 -31.33332 -30.93739 -30.47131 -28.73337 -25.91562 -25.29451 -24.88848 -22.96506 -22.22627 -21.99455 -20.92182 -19.61922 -18.83566 -18.48094 -17.42823 -16.82841 -16.54360 -15.70919 -15.51692 -15.01603 -14.87108 -14.76570 -14.53146 -14.21588 -14.08026 -13.89577 -13.46661 -13.16215 -12.83347 -12.45686 -12.41550 -12.17620 -12.08378 -12.05604 -12.04102 -11.84595 -11.11236 -10.90657 -10.80943 -10.27668 -10.22528 -10.08489 -9.91335 -9.66645 -9.62813 -9.51775 -9.39523 -8.99515 -8.85540 -8.40880 -6.68348 -5.78172 -3.20387 -0.28696 0.04061 1.47881 2.05925 3.08918 3.16251 3.41060 3.47529 3.50181 3.60303 3.70536 3.76110 3.85014 4.36261 4.44429 4.51312 4.56701 4.65662 4.77520 4.98581 5.22655 5.32947 5.37405 5.47903 5.52152 5.59473 5.63926 5.69213 5.73804 5.87671 6.04611 6.11372 6.17552 6.21559 6.49246 6.58640 6.61538 6.66720 6.81235 6.83610 6.95516 7.29634 7.34684 7.61309 7.64225 7.83909 8.27842 8.46196 9.22328 9.84431 10.39732 11.30544 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022905 B = 0.002486 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.163712 B =11260.120031 C =12059.204370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.166 3.834 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.089 0.911 15 N -0.714 5.714 16 C 0.552 3.448 17 O -0.524 6.524 18 C -0.108 4.108 19 C -0.072 4.072 20 C -0.088 4.088 21 C 0.091 3.909 22 N -0.428 5.428 23 C 0.082 3.918 24 C 0.073 3.927 25 N -0.415 5.415 26 C 0.070 3.930 27 C -0.015 4.015 28 C 0.142 3.858 29 H 0.253 0.747 30 H 0.090 0.910 31 H 0.019 0.981 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.394 0.606 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.177 0.823 40 H 0.177 0.823 41 H 0.156 0.844 42 H 0.058 0.942 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.491 -24.712 0.885 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.107 0.893 15 N -0.364 5.364 16 C 0.338 3.662 17 O -0.400 6.400 18 C -0.113 4.113 19 C -0.092 4.092 20 C -0.107 4.107 21 C -0.033 4.033 22 N -0.142 5.142 23 C -0.094 4.094 24 C -0.103 4.103 25 N -0.129 5.129 26 C -0.054 4.054 27 C -0.036 4.036 28 C 0.014 3.986 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.229 0.771 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.194 0.806 40 H 0.194 0.806 41 H 0.174 0.826 42 H 0.077 0.923 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 6.835 -23.740 0.724 24.715 hybrid contribution 0.086 0.336 0.161 0.382 sum 6.921 -23.404 0.885 24.422 Atomic orbital electron populations 1.70040 1.05233 1.25506 1.54087 1.25025 0.95313 0.98417 1.00889 0.86261 0.79185 0.83472 0.77739 1.21392 1.21789 1.20344 1.19242 0.92853 0.84650 1.41244 0.91483 1.44004 1.35587 1.01031 1.50382 1.20850 0.88568 0.98629 0.87880 1.22179 1.00505 0.95099 1.00152 1.21683 0.96641 0.98731 0.98257 1.21826 0.98042 0.80821 0.97294 0.89319 1.46071 1.08812 1.16123 1.65434 1.18056 0.83230 0.86517 0.78424 1.90837 1.46899 1.49032 1.53274 1.20154 0.93976 0.95005 1.02162 1.21094 0.99332 0.92342 0.96470 1.20668 0.94420 0.97001 0.98601 1.19672 0.95263 0.90377 0.98011 1.68733 1.20772 1.17206 1.07491 1.24159 0.88902 1.01168 0.95129 1.24122 1.01566 0.89364 0.95279 1.68698 1.19240 1.18494 1.06500 1.19461 0.89998 0.95488 1.00409 1.21273 0.96453 0.93943 0.91900 1.21180 0.98047 0.86849 0.92519 0.93656 0.89216 0.96265 0.92645 0.92370 0.92173 0.92989 0.77097 0.84144 0.83640 0.80638 0.80587 0.82604 0.92325 0.96408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 11.19 55.49 0.62 -25.63 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 22.13 29.59 -169.99 -5.03 17.10 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.25 -7.04 9.59 -15.06 -0.14 -7.18 16 8 H 0.07 1.90 7.89 -52.49 -0.41 1.49 16 9 N -0.59 -14.84 3.00 -172.32 -0.52 -15.36 16 10 C 0.17 3.88 5.31 -3.71 -0.02 3.86 16 11 C -0.14 -2.54 6.08 -26.62 -0.16 -2.70 16 12 C -0.11 -1.78 5.36 -26.69 -0.14 -1.92 16 13 C 0.13 2.18 2.60 -67.82 -0.18 2.00 16 14 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 15 N -0.71 -9.81 5.03 -54.63 -0.27 -10.09 16 16 C 0.55 8.36 7.73 -12.32 -0.10 8.27 16 17 O -0.52 -10.19 15.96 5.32 0.08 -10.11 16 18 C -0.11 -1.30 5.87 -105.00 -0.62 -1.92 16 19 C -0.07 -0.65 9.44 -39.58 -0.37 -1.02 16 20 C -0.09 -0.79 9.95 -39.55 -0.39 -1.18 16 21 C 0.09 0.98 6.59 -84.73 -0.56 0.42 16 22 N -0.43 -4.19 10.46 -10.74 -0.11 -4.30 16 23 C 0.08 0.55 11.22 -17.19 -0.19 0.36 16 24 C 0.07 0.52 11.21 -17.22 -0.19 0.33 16 25 N -0.42 -4.59 10.46 -10.81 -0.11 -4.71 16 26 C 0.07 0.83 6.58 -84.81 -0.56 0.27 16 27 C -0.02 -0.19 9.56 -38.69 -0.37 -0.56 16 28 C 0.14 3.05 6.09 -3.71 -0.02 3.03 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.39 3.98 6.59 -40.82 -0.27 3.71 16 37 H 0.14 0.86 6.35 -52.49 -0.33 0.53 16 38 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.18 0.44 8.06 -52.49 -0.42 0.02 16 40 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.16 2.08 7.61 -52.49 -0.40 1.68 16 42 H 0.06 1.36 7.93 -51.93 -0.41 0.95 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 356.40 15.07 5.37 5.37 Total: -1.00 -34.68 356.40 -9.55 -44.23 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.47 Total: 1.46 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -4.10 Total: 2.03 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.40 Total: -60.08 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.68 -9.55 -44.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009452500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.456 kcal (2) G-P(sol) polarization free energy of solvation -34.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds