Wall clock time and date at job start Tue Mar 31 2020 14:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99977 * 2 1 4 4 H 1.48497 * 109.46812 * 270.00210 * 3 2 1 5 5 H 1.48507 * 109.46940 * 29.99858 * 3 2 1 6 6 H 1.48497 * 109.47456 * 149.99774 * 3 2 1 7 7 C 1.38813 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 197.35250 * 7 2 1 9 9 N 1.36936 * 120.00195 * 17.36157 * 7 2 1 10 10 C 1.46931 * 120.63067 * 27.67060 * 9 7 2 11 11 C 1.53187 * 108.77328 * 126.41445 * 10 9 7 12 12 C 1.53036 * 109.34322 * 54.61625 * 11 10 9 13 13 C 1.53035 * 109.54208 * 298.68633 * 12 11 10 14 14 H 1.09003 * 109.49500 * 301.34856 * 13 12 11 15 15 N 1.46501 * 109.49926 * 181.28066 * 13 12 11 16 16 C 1.34777 * 119.99852 * 155.12761 * 15 13 12 17 17 O 1.21550 * 119.99891 * 359.97438 * 16 15 13 18 18 C 1.47861 * 119.99800 * 180.02562 * 16 15 13 19 19 C 1.40620 * 119.75602 * 359.97438 * 18 16 15 20 20 C 1.35736 * 120.83558 * 180.02562 * 19 18 16 21 21 C 1.40703 * 120.08025 * 0.02562 * 20 19 18 22 22 N 1.33797 * 120.85389 * 180.02562 * 21 20 19 23 23 C 1.31334 * 119.76090 * 179.97438 * 22 21 20 24 24 C 1.39762 * 120.70943 * 359.97438 * 23 22 21 25 25 N 1.31270 * 120.67493 * 359.97438 * 24 23 22 26 26 C 1.33830 * 119.73675 * 0.04373 * 25 24 23 27 27 C 1.38416 * 119.75508 * 179.73076 * 18 16 15 28 28 C 1.46924 * 120.62987 * 207.68989 * 9 7 2 29 29 H 0.97006 * 120.00403 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.58722 * 6.62827 * 10 9 7 31 31 H 1.09000 * 109.69982 * 246.27127 * 10 9 7 32 32 H 1.09003 * 109.49294 * 174.58737 * 11 10 9 33 33 H 1.09000 * 109.49839 * 294.64876 * 11 10 9 34 34 H 1.09004 * 109.45659 * 58.67099 * 12 11 10 35 35 H 1.09004 * 109.46253 * 178.62448 * 12 11 10 36 36 H 0.96999 * 119.99723 * 335.12950 * 15 13 12 37 37 H 1.07995 * 119.58212 * 0.02562 * 19 18 16 38 38 H 1.08000 * 119.95586 * 180.02562 * 20 19 18 39 39 H 1.07999 * 119.64801 * 180.02562 * 23 22 21 40 40 H 1.08002 * 119.66329 * 180.02562 * 24 23 22 41 41 H 1.07994 * 120.24988 * 359.97438 * 27 18 16 42 42 H 1.08995 * 109.58607 * 353.37922 * 28 9 7 43 43 H 1.09001 * 109.58385 * 113.65673 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3528 10 6 0.2277 -2.3350 -1.2737 11 6 0.5005 -3.3056 -2.4270 12 6 0.8189 -4.6906 -1.8594 13 6 2.0741 -4.6104 -0.9876 14 1 2.9083 -4.2410 -1.5840 15 7 2.3955 -5.9425 -0.4694 16 6 3.6619 -6.2414 -0.1181 17 8 4.5374 -5.4059 -0.2317 18 6 3.9864 -7.5860 0.4043 19 6 2.9697 -8.5488 0.5330 20 6 3.2429 -9.7897 1.0105 21 6 4.5564 -10.1278 1.3851 22 7 4.8432 -11.3464 1.8571 23 6 6.0767 -11.6391 2.1999 24 6 7.0959 -10.6907 2.0766 25 7 6.8399 -9.4887 1.6152 26 6 5.5907 -9.1663 1.2596 27 6 5.2897 -7.8893 0.7583 28 6 1.8192 -3.6546 0.1821 29 1 -0.4851 0.8401 -0.0004 30 1 0.0985 -1.3268 -1.6674 31 1 -0.6758 -2.6397 -0.7456 32 1 -0.3803 -3.3679 -3.0661 33 1 1.3488 -2.9479 -3.0106 34 1 -0.0201 -5.0374 -1.2561 35 1 0.9894 -5.3887 -2.6791 36 1 1.6969 -6.6094 -0.3792 37 1 1.9586 -8.2979 0.2483 38 1 2.4511 -10.5183 1.1031 39 1 6.3063 -12.6234 2.5803 40 1 8.1045 -10.9496 2.3631 41 1 6.0684 -7.1483 0.6538 42 1 2.7399 -3.5171 0.7490 43 1 1.0478 -4.0672 0.8324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009452500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:31 Heat of formation + Delta-G solvation = 32.351894 kcal Electronic energy + Delta-G solvation = -26547.391735 eV Core-core repulsion = 22785.138555 eV Total energy + Delta-G solvation = -3762.253180 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.49543 -41.15265 -39.16783 -38.03203 -36.07926 -35.83189 -34.24024 -32.34982 -32.23184 -31.70497 -30.20147 -27.27896 -26.76260 -25.61139 -24.09810 -23.87690 -23.16513 -22.12630 -21.15955 -19.77388 -19.35701 -18.73141 -18.18721 -17.52076 -17.07020 -16.70666 -16.40464 -16.02752 -15.77851 -15.68518 -15.34160 -15.19752 -15.16555 -14.84725 -14.80928 -14.22435 -14.05243 -13.61130 -13.40630 -13.05490 -12.94503 -12.84621 -12.83371 -12.76865 -12.75018 -12.56720 -12.13061 -11.98278 -11.77132 -11.59973 -11.32550 -11.10547 -10.63350 -10.27197 -10.18693 -10.04938 -9.73801 -8.71174 -7.92079 -5.37306 -1.04499 -0.64500 0.69424 1.27577 1.43296 1.44459 1.53874 1.93521 2.16617 2.48759 2.92948 2.97195 3.09594 3.17502 3.21788 3.47921 3.72582 3.77650 3.82672 3.90691 3.97704 4.10888 4.12784 4.24445 4.41991 4.47726 4.54037 4.66843 4.70463 4.81305 4.90064 4.92052 5.01671 5.02482 5.11984 5.14049 5.16625 5.27379 5.42082 5.49817 5.54594 5.62564 5.76929 6.18765 6.35360 6.47903 6.64643 7.10949 7.14643 7.81305 8.30503 9.13412 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022905 B = 0.002486 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.163712 B =11260.120031 C =12059.204370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.044 4.044 3 Si 0.965 3.035 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.268 4.268 8 H 0.052 0.948 9 N -0.607 5.607 10 C 0.170 3.830 11 C -0.130 4.130 12 C -0.104 4.104 13 C 0.141 3.859 14 H 0.059 0.941 15 N -0.696 5.696 16 C 0.552 3.448 17 O -0.578 6.578 18 C -0.114 4.114 19 C -0.067 4.067 20 C -0.079 4.079 21 C 0.077 3.923 22 N -0.447 5.447 23 C 0.098 3.902 24 C 0.084 3.916 25 N -0.455 5.455 26 C 0.048 3.952 27 C -0.033 4.033 28 C 0.144 3.856 29 H 0.253 0.747 30 H 0.054 0.946 31 H 0.007 0.993 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.417 0.583 37 H 0.174 0.826 38 H 0.174 0.826 39 H 0.225 0.775 40 H 0.219 0.781 41 H 0.132 0.868 42 H 0.027 0.973 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.975 -28.391 0.824 29.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.240 4.240 3 Si 0.792 3.208 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.398 4.398 8 H 0.069 0.931 9 N -0.331 5.331 10 C 0.045 3.955 11 C -0.170 4.170 12 C -0.142 4.142 13 C 0.035 3.965 14 H 0.077 0.923 15 N -0.348 5.348 16 C 0.340 3.660 17 O -0.458 6.458 18 C -0.119 4.119 19 C -0.087 4.087 20 C -0.098 4.098 21 C -0.046 4.046 22 N -0.161 5.161 23 C -0.079 4.079 24 C -0.093 4.093 25 N -0.170 5.170 26 C -0.074 4.074 27 C -0.054 4.054 28 C 0.017 3.983 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.256 0.744 37 H 0.191 0.809 38 H 0.191 0.809 39 H 0.241 0.759 40 H 0.235 0.765 41 H 0.150 0.850 42 H 0.046 0.954 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.267 -27.457 0.646 28.170 hybrid contribution 0.404 1.295 0.315 1.393 sum 6.671 -26.162 0.961 27.016 Atomic orbital electron populations 1.70162 1.06290 1.26012 1.54879 1.25704 0.96146 1.01152 1.00954 0.85316 0.77970 0.79681 0.77785 1.20811 1.21419 1.20163 1.19385 0.92554 0.86411 1.41440 0.93059 1.44228 1.36035 1.01475 1.51379 1.20744 0.87531 0.98258 0.88998 1.22018 1.01428 0.95280 0.98230 1.21625 0.95714 0.97723 0.99145 1.21328 0.98311 0.81506 0.95390 0.92270 1.45761 1.09168 1.15162 1.64686 1.18559 0.82866 0.87256 0.77336 1.90811 1.48513 1.50986 1.55476 1.19899 0.94728 0.93943 1.03363 1.21295 0.99736 0.91567 0.96103 1.20995 0.94427 0.97258 0.97151 1.19934 0.95704 0.90689 0.98281 1.68836 1.22318 1.16486 1.08496 1.25009 0.87687 1.02686 0.92474 1.24941 1.03666 0.87980 0.92685 1.68692 1.19232 1.20742 1.08305 1.19456 0.91045 0.95383 1.01550 1.21174 0.96394 0.94438 0.93368 1.21220 0.96495 0.86539 0.94064 0.93823 0.92760 0.97446 0.89525 0.93518 0.90110 0.89143 0.74385 0.80876 0.80884 0.75913 0.76502 0.85034 0.95413 0.95744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.35 11.19 21.65 0.24 -55.11 16 2 C -0.04 -2.52 4.91 84.86 0.42 -2.10 16 3 Si 0.96 46.77 29.59 68.60 2.03 48.80 16 4 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.27 -15.71 9.59 84.03 0.81 -14.91 16 8 H 0.05 3.09 7.89 -2.91 -0.02 3.07 16 9 N -0.61 -31.79 3.00 -699.11 -2.09 -33.89 16 10 C 0.17 8.06 5.31 86.36 0.46 8.52 16 11 C -0.13 -4.56 6.08 30.67 0.19 -4.37 16 12 C -0.10 -2.93 5.36 30.62 0.16 -2.77 16 13 C 0.14 4.88 2.60 45.07 0.12 5.00 16 14 H 0.06 2.44 7.58 -2.39 -0.02 2.43 16 15 N -0.70 -18.45 5.03 -445.03 -2.24 -20.69 16 16 C 0.55 17.21 7.73 86.79 0.67 17.89 16 17 O -0.58 -24.14 15.96 -3.87 -0.06 -24.20 16 18 C -0.11 -2.80 5.87 -20.11 -0.12 -2.91 16 19 C -0.07 -1.07 9.44 22.27 0.21 -0.86 16 20 C -0.08 -1.24 9.95 22.29 0.22 -1.02 16 21 C 0.08 1.54 6.59 40.32 0.27 1.81 16 22 N -0.45 -7.50 10.46 -187.89 -1.96 -9.46 16 23 C 0.10 0.96 11.22 85.14 0.95 1.91 16 24 C 0.08 0.98 11.21 85.15 0.95 1.94 16 25 N -0.46 -9.90 10.46 -188.11 -1.97 -11.87 16 26 C 0.05 1.14 6.58 40.25 0.27 1.41 16 27 C -0.03 -0.89 9.56 22.85 0.22 -0.67 16 28 C 0.14 6.38 6.09 86.36 0.53 6.91 16 29 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 30 H 0.05 2.94 6.04 -2.39 -0.01 2.93 16 31 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.42 7.17 6.59 -92.71 -0.61 6.56 16 37 H 0.17 1.47 6.35 -2.91 -0.02 1.45 16 38 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.22 -0.11 8.06 -2.91 -0.02 -0.13 16 40 H 0.22 0.49 8.06 -2.91 -0.02 0.47 16 41 H 0.13 4.03 7.61 -2.91 -0.02 4.00 16 42 H 0.03 1.36 7.93 -2.39 -0.02 1.34 16 43 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -82.43 356.40 0.70 -81.72 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.44 Total: 8.93 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 6.32 Total: 15.76 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -8.02 Total: -131.01 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.06 Total: -24.20 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -82.43 0.70 -81.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009452500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.076 kcal (2) G-P(sol) polarization free energy of solvation -82.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds