Wall clock time and date at job start Tue Mar 31 2020 14:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99959 * 2 1 4 4 H 1.48497 * 109.47360 * 85.00440 * 3 2 1 5 5 H 1.48498 * 109.47373 * 205.01401 * 3 2 1 6 6 H 1.48510 * 109.46745 * 325.01035 * 3 2 1 7 7 C 1.38814 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00022 * 157.89856 * 7 2 1 9 9 N 1.36935 * 120.00002 * 337.89830 * 7 2 1 10 10 C 1.47165 * 120.71146 * 154.62389 * 9 7 2 11 11 C 1.53877 * 108.02711 * 132.75995 * 10 9 7 12 12 H 1.09005 * 112.09433 * 181.91393 * 11 10 9 13 13 C 1.54549 * 107.83323 * 305.86667 * 11 10 9 14 14 C 1.55861 * 104.09174 * 89.28520 * 13 11 10 15 15 C 1.54543 * 104.99795 * 359.97438 * 14 13 11 16 16 H 1.09005 * 112.18210 * 146.42388 * 15 14 13 17 17 C 1.47166 * 120.70833 * 334.34624 * 9 7 2 18 18 N 1.48306 * 104.36098 * 24.71550 * 15 14 13 19 19 C 1.34776 * 128.07796 * 139.07668 * 18 15 14 20 20 O 1.21649 * 119.99574 * 176.14363 * 19 18 15 21 21 C 1.47275 * 120.00110 * 356.14190 * 19 18 15 22 22 C 1.38441 * 120.02811 * 185.85375 * 21 19 18 23 23 C 1.40655 * 118.26728 * 179.74328 * 22 21 19 24 24 C 1.38255 * 133.39885 * 180.20324 * 23 22 21 25 25 C 1.39675 * 106.99495 * 180.29839 * 24 23 22 26 26 C 1.35639 * 108.08639 * 0.02562 * 25 24 23 27 27 N 1.35913 * 109.05644 * 359.97438 * 26 25 24 28 28 C 1.36912 * 132.42468 * 180.02562 * 27 26 25 29 29 N 1.29793 * 121.47848 * 179.97438 * 28 27 26 30 30 H 0.97001 * 120.00171 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.74589 * 252.39472 * 10 9 7 32 32 H 1.09001 * 109.74459 * 13.07131 * 10 9 7 33 33 H 1.08997 * 110.36704 * 207.91811 * 13 11 10 34 34 H 1.08998 * 110.36249 * 330.23689 * 13 11 10 35 35 H 1.09001 * 110.27973 * 241.09716 * 14 13 11 36 36 H 1.08999 * 110.39323 * 118.92890 * 14 13 11 37 37 H 1.08998 * 109.75169 * 346.87674 * 17 9 7 38 38 H 1.09004 * 109.74795 * 107.60776 * 17 9 7 39 39 H 1.07997 * 120.86202 * 359.97438 * 22 21 19 40 40 H 1.07998 * 126.50309 * 0.32216 * 24 23 22 41 41 H 1.08008 * 125.95852 * 180.02562 * 25 24 23 42 42 H 1.08005 * 125.47479 * 179.97438 * 26 25 24 43 43 H 1.08005 * 119.25827 * 359.94576 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3921 2.1074 1.3947 5 1 3.5964 1.4121 -0.5920 6 1 1.5042 2.6199 -0.8029 7 6 2.0103 -1.2021 0.0005 8 1 3.0308 -1.2366 -0.3514 9 7 1.4012 -2.3443 0.4472 10 6 1.8438 -3.6660 -0.0247 11 6 1.9959 -4.5831 1.2015 12 1 2.3555 -5.5755 0.9292 13 6 2.9348 -3.8780 2.2064 14 6 1.9744 -3.0236 3.0878 15 6 0.5621 -3.3007 2.5247 16 1 -0.2014 -3.2853 3.3026 17 6 0.2938 -2.2766 1.4142 18 7 0.6778 -4.6310 1.8795 19 6 -0.2080 -5.6465 1.9037 20 8 0.0069 -6.6564 1.2604 21 6 -1.4359 -5.5335 2.7089 22 6 -2.2861 -6.6192 2.8318 23 6 -3.4457 -6.4720 3.6142 24 6 -4.4821 -7.3246 3.9463 25 6 -5.3604 -6.6029 4.7579 26 6 -4.8625 -5.3500 4.9072 27 7 -3.6956 -5.2511 4.2175 28 6 -2.8096 -4.2218 4.0441 29 7 -1.7379 -4.3638 3.3258 30 1 -0.4850 0.8400 0.0004 31 1 1.1011 -4.0816 -0.7058 32 1 2.8015 -3.5725 -0.5368 33 1 3.4600 -4.6137 2.8154 34 1 3.6467 -3.2431 1.6790 35 1 2.2183 -1.9653 2.9958 36 1 2.0356 -3.3371 4.1300 37 1 0.2396 -1.2758 1.8426 38 1 -0.6455 -2.5159 0.9157 39 1 -2.0628 -7.5559 2.3428 40 1 -4.5917 -8.3535 3.6371 41 1 -6.2763 -6.9771 5.1910 42 1 -5.3199 -4.5582 5.4820 43 1 -3.0072 -3.2702 4.5152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017651852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:17 Heat of formation + Delta-G solvation = 106.541062 kcal Electronic energy + Delta-G solvation = -28266.507121 eV Core-core repulsion = 24507.471025 eV Total energy + Delta-G solvation = -3759.036096 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.50110 -40.10508 -38.16635 -37.16246 -34.04077 -33.22264 -31.66588 -30.94934 -30.64147 -30.32689 -28.45581 -26.21091 -24.64338 -23.79880 -23.58344 -22.50818 -21.41694 -20.71283 -20.07686 -19.00451 -18.08125 -17.41499 -16.30369 -16.12345 -15.90639 -15.46700 -15.26361 -14.88069 -14.50519 -14.44053 -14.30933 -13.45249 -13.34493 -12.99117 -12.84826 -12.75789 -12.64647 -12.54238 -12.29405 -11.94060 -11.89174 -11.54668 -11.15122 -10.84971 -10.72125 -10.69779 -10.45339 -10.28088 -10.22844 -9.92688 -9.74231 -9.62283 -9.32533 -9.13318 -8.51889 -8.19549 -7.62770 -6.69725 -5.81617 -3.19484 0.35659 1.06579 2.39538 2.68159 2.83726 3.27959 3.35765 3.44018 3.44964 3.77575 3.91861 4.42935 4.47450 4.51153 4.65554 5.00014 5.06933 5.21873 5.26359 5.32513 5.35793 5.44875 5.49586 5.58271 5.66625 5.87030 5.88682 5.95960 6.00397 6.16455 6.30681 6.39130 6.44841 6.48267 6.50408 6.57412 6.63459 6.76366 6.88615 6.93844 7.07256 7.23894 7.50788 7.55721 7.77293 8.11564 8.36285 8.51461 9.15937 9.80129 10.38273 11.26732 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017383 B = 0.003812 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.390567 B = 7343.350773 C = 8296.867930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.005 3.995 3 Si 0.897 3.103 4 H -0.288 1.288 5 H -0.279 1.279 6 H -0.293 1.293 7 C -0.253 4.253 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.139 3.861 11 C 0.113 3.887 12 H 0.088 0.912 13 C -0.111 4.111 14 C -0.116 4.116 15 C 0.089 3.911 16 H 0.126 0.874 17 C 0.179 3.821 18 N -0.583 5.583 19 C 0.589 3.411 20 O -0.557 6.557 21 C 0.029 3.971 22 C -0.050 4.050 23 C 0.032 3.968 24 C -0.178 4.178 25 C -0.148 4.148 26 C -0.032 4.032 27 N -0.387 5.387 28 C 0.305 3.695 29 N -0.452 5.452 30 H 0.253 0.747 31 H 0.020 0.980 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.021 0.979 39 H 0.162 0.838 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.175 0.825 43 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 -10.025 12.674 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.727 3.273 4 H -0.215 1.215 5 H -0.204 1.204 6 H -0.220 1.220 7 C -0.382 4.382 8 H 0.086 0.914 9 N -0.311 5.311 10 C 0.011 3.989 11 C 0.008 3.992 12 H 0.106 0.894 13 C -0.149 4.149 14 C -0.154 4.154 15 C -0.015 4.015 16 H 0.143 0.857 17 C 0.052 3.948 18 N -0.313 5.313 19 C 0.377 3.623 20 O -0.437 6.437 21 C -0.089 4.089 22 C -0.072 4.072 23 C -0.074 4.074 24 C -0.204 4.204 25 C -0.170 4.170 26 C -0.163 4.163 27 N -0.059 5.059 28 C 0.023 3.977 29 N -0.164 5.164 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.039 0.961 39 H 0.179 0.821 40 H 0.167 0.833 41 H 0.168 0.832 42 H 0.193 0.807 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -6.503 -9.652 12.056 16.757 hybrid contribution -0.297 0.432 0.005 0.525 sum -6.800 -9.220 12.061 16.634 Atomic orbital electron populations 1.70117 1.05279 1.25490 1.53319 1.24950 0.95099 0.98356 1.01035 0.86348 0.79341 0.84009 0.77577 1.21470 1.20402 1.21951 1.19167 0.94566 0.85423 1.39039 0.91414 1.44124 1.39176 1.00325 1.47490 1.21434 0.98359 0.86771 0.92292 1.22930 0.82208 0.99256 0.94756 0.89356 1.22581 0.97315 0.98119 0.96929 1.22639 0.94588 1.01376 0.96810 1.23823 0.98070 0.81664 0.97951 0.85671 1.21056 0.89704 0.96351 0.87655 1.48985 1.18099 1.14420 1.49765 1.16922 0.81793 0.82398 0.81212 1.90777 1.76946 1.30551 1.45404 1.20890 0.97405 0.89674 1.00883 1.21616 0.90109 1.00496 0.95006 1.18896 0.98895 0.86788 1.02778 1.21109 0.94701 0.99915 1.04692 1.21020 1.00939 0.93129 1.01953 1.21966 0.88496 1.00716 1.05098 1.43234 1.17645 1.10969 1.34072 1.25046 0.84863 0.92210 0.95616 1.68423 1.15263 1.23759 1.08927 0.93699 0.96253 0.91857 0.92978 0.89845 0.89720 0.93334 0.89794 0.96092 0.82097 0.83259 0.83223 0.80744 0.77506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.54 11.51 55.49 0.64 -24.90 16 2 C 0.00 0.13 4.79 -17.43 -0.08 0.04 16 3 Si 0.90 21.07 29.61 -169.99 -5.03 16.03 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.25 -6.67 9.60 -15.06 -0.14 -6.81 16 8 H 0.07 1.76 7.91 -52.48 -0.42 1.35 16 9 N -0.59 -14.32 2.29 -171.36 -0.39 -14.71 16 10 C 0.14 3.00 6.01 -3.22 -0.02 2.98 16 11 C 0.11 2.13 4.07 -65.67 -0.27 1.87 16 12 H 0.09 1.61 7.95 -51.93 -0.41 1.19 16 13 C -0.11 -1.89 6.31 -24.39 -0.15 -2.04 16 14 C -0.12 -2.02 6.22 -24.39 -0.15 -2.17 16 15 C 0.09 1.68 3.67 -65.90 -0.24 1.44 16 16 H 0.13 2.20 5.04 -51.93 -0.26 1.94 16 17 C 0.18 4.16 4.60 -3.45 -0.02 4.14 16 18 N -0.58 -11.36 2.75 -154.60 -0.42 -11.78 16 19 C 0.59 11.55 7.87 -12.59 -0.10 11.45 16 20 O -0.56 -11.95 16.68 5.23 0.09 -11.87 16 21 C 0.03 0.49 6.75 -82.43 -0.56 -0.07 16 22 C -0.05 -0.73 9.72 -38.59 -0.38 -1.10 16 23 C 0.03 0.40 6.78 -83.95 -0.57 -0.17 16 24 C -0.18 -1.87 10.98 -39.04 -0.43 -2.30 16 25 C -0.15 -1.28 10.80 -39.97 -0.43 -1.71 16 26 C -0.03 -0.27 11.61 -16.67 -0.19 -0.47 16 27 N -0.39 -4.37 2.95 -62.17 -0.18 -4.56 16 28 C 0.30 3.50 12.16 -89.22 -1.09 2.41 16 29 N -0.45 -6.82 6.67 -10.42 -0.07 -6.89 16 30 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 1.29 7.96 -51.93 -0.41 0.88 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.46 7.84 -51.93 -0.41 1.05 16 35 H 0.08 1.60 7.83 -51.93 -0.41 1.19 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 2.12 6.46 -51.93 -0.34 1.78 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.16 2.19 7.67 -52.49 -0.40 1.79 16 40 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 42 H 0.18 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.21 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 347.48 15.07 5.24 5.24 Total: -1.00 -32.87 347.48 -10.53 -43.40 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.57 Total: 2.52 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -4.82 Total: 7.51 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -0.43 Total: -62.84 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.87 -10.53 -43.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017651852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.943 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds