Wall clock time and date at job start Tue Mar 31 2020 14:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99959 * 2 1 4 4 H 1.48497 * 109.47360 * 85.00440 * 3 2 1 5 5 H 1.48498 * 109.47373 * 205.01401 * 3 2 1 6 6 H 1.48510 * 109.46745 * 325.01035 * 3 2 1 7 7 C 1.38814 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00022 * 157.89856 * 7 2 1 9 9 N 1.36935 * 120.00002 * 337.89830 * 7 2 1 10 10 C 1.47165 * 120.71146 * 154.62389 * 9 7 2 11 11 C 1.53877 * 108.02711 * 132.75995 * 10 9 7 12 12 H 1.09005 * 112.09433 * 181.91393 * 11 10 9 13 13 C 1.54549 * 107.83323 * 305.86667 * 11 10 9 14 14 C 1.55861 * 104.09174 * 89.28520 * 13 11 10 15 15 C 1.54543 * 104.99795 * 359.97438 * 14 13 11 16 16 H 1.09005 * 112.18210 * 146.42388 * 15 14 13 17 17 C 1.47166 * 120.70833 * 334.34624 * 9 7 2 18 18 N 1.48306 * 104.36098 * 24.71550 * 15 14 13 19 19 C 1.34776 * 128.07796 * 139.07668 * 18 15 14 20 20 O 1.21649 * 119.99574 * 176.14363 * 19 18 15 21 21 C 1.47275 * 120.00110 * 356.14190 * 19 18 15 22 22 C 1.38441 * 120.02811 * 185.85375 * 21 19 18 23 23 C 1.40655 * 118.26728 * 179.74328 * 22 21 19 24 24 C 1.38255 * 133.39885 * 180.20324 * 23 22 21 25 25 C 1.39675 * 106.99495 * 180.29839 * 24 23 22 26 26 C 1.35639 * 108.08639 * 0.02562 * 25 24 23 27 27 N 1.35913 * 109.05644 * 359.97438 * 26 25 24 28 28 C 1.36912 * 132.42468 * 180.02562 * 27 26 25 29 29 N 1.29793 * 121.47848 * 179.97438 * 28 27 26 30 30 H 0.97001 * 120.00171 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.74589 * 252.39472 * 10 9 7 32 32 H 1.09001 * 109.74459 * 13.07131 * 10 9 7 33 33 H 1.08997 * 110.36704 * 207.91811 * 13 11 10 34 34 H 1.08998 * 110.36249 * 330.23689 * 13 11 10 35 35 H 1.09001 * 110.27973 * 241.09716 * 14 13 11 36 36 H 1.08999 * 110.39323 * 118.92890 * 14 13 11 37 37 H 1.08998 * 109.75169 * 346.87674 * 17 9 7 38 38 H 1.09004 * 109.74795 * 107.60776 * 17 9 7 39 39 H 1.07997 * 120.86202 * 359.97438 * 22 21 19 40 40 H 1.07998 * 126.50309 * 0.32216 * 24 23 22 41 41 H 1.08008 * 125.95852 * 180.02562 * 25 24 23 42 42 H 1.08005 * 125.47479 * 179.97438 * 26 25 24 43 43 H 1.08005 * 119.25827 * 359.94576 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3921 2.1074 1.3947 5 1 3.5964 1.4121 -0.5920 6 1 1.5042 2.6199 -0.8029 7 6 2.0103 -1.2021 0.0005 8 1 3.0308 -1.2366 -0.3514 9 7 1.4012 -2.3443 0.4472 10 6 1.8438 -3.6660 -0.0247 11 6 1.9959 -4.5831 1.2015 12 1 2.3555 -5.5755 0.9292 13 6 2.9348 -3.8780 2.2064 14 6 1.9744 -3.0236 3.0878 15 6 0.5621 -3.3007 2.5247 16 1 -0.2014 -3.2853 3.3026 17 6 0.2938 -2.2766 1.4142 18 7 0.6778 -4.6310 1.8795 19 6 -0.2080 -5.6465 1.9037 20 8 0.0069 -6.6564 1.2604 21 6 -1.4359 -5.5335 2.7089 22 6 -2.2861 -6.6192 2.8318 23 6 -3.4457 -6.4720 3.6142 24 6 -4.4821 -7.3246 3.9463 25 6 -5.3604 -6.6029 4.7579 26 6 -4.8625 -5.3500 4.9072 27 7 -3.6956 -5.2511 4.2175 28 6 -2.8096 -4.2218 4.0441 29 7 -1.7379 -4.3638 3.3258 30 1 -0.4850 0.8400 0.0004 31 1 1.1011 -4.0816 -0.7058 32 1 2.8015 -3.5725 -0.5368 33 1 3.4600 -4.6137 2.8154 34 1 3.6467 -3.2431 1.6790 35 1 2.2183 -1.9653 2.9958 36 1 2.0356 -3.3371 4.1300 37 1 0.2396 -1.2758 1.8426 38 1 -0.6455 -2.5159 0.9157 39 1 -2.0628 -7.5559 2.3428 40 1 -4.5917 -8.3535 3.6371 41 1 -6.2763 -6.9771 5.1910 42 1 -5.3199 -4.5582 5.4820 43 1 -3.0072 -3.2702 4.5152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017651852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:16 Heat of formation + Delta-G solvation = 89.389400 kcal Electronic energy + Delta-G solvation = -28267.250873 eV Core-core repulsion = 24507.471025 eV Total energy + Delta-G solvation = -3759.779848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.34722 -41.60916 -39.54481 -38.31695 -35.91757 -34.18381 -33.25293 -32.35218 -32.14019 -31.76026 -29.45304 -28.03607 -25.76911 -25.22740 -25.00406 -24.00834 -22.43721 -21.98622 -21.46067 -20.22756 -19.58016 -18.68037 -17.80868 -17.45078 -16.87706 -16.75078 -16.66914 -16.34381 -16.11054 -15.77555 -15.28116 -15.23628 -14.97275 -14.57725 -14.30199 -13.89390 -13.68073 -13.55492 -13.45564 -13.31974 -13.28805 -13.18291 -12.85838 -12.69236 -12.28177 -12.13297 -12.07203 -11.90108 -11.69390 -11.61279 -11.35730 -11.16581 -10.65782 -10.53790 -9.91206 -9.83092 -8.72448 -8.52283 -7.86408 -5.28879 -0.66234 0.19203 1.49264 1.51093 1.57943 1.60156 1.61962 1.90027 1.97635 2.52689 2.61554 2.91120 3.27231 3.39500 3.54384 3.62270 3.86829 3.88621 3.92627 4.04011 4.12696 4.27347 4.29179 4.40400 4.48796 4.56338 4.61862 4.63175 4.72817 4.88161 5.00405 5.00708 5.11106 5.12758 5.16553 5.21791 5.32204 5.37901 5.52361 5.54204 5.64418 5.67801 5.76915 6.20353 6.33192 6.55667 6.63833 7.05571 7.11802 7.80345 8.36461 9.20162 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017383 B = 0.003812 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.390567 B = 7343.350773 C = 8296.867930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.045 4.045 3 Si 0.965 3.035 4 H -0.281 1.281 5 H -0.269 1.269 6 H -0.301 1.301 7 C -0.260 4.260 8 H 0.072 0.928 9 N -0.599 5.599 10 C 0.138 3.862 11 C 0.114 3.886 12 H 0.096 0.904 13 C -0.101 4.101 14 C -0.110 4.110 15 C 0.102 3.898 16 H 0.144 0.856 17 C 0.195 3.805 18 N -0.590 5.590 19 C 0.582 3.418 20 O -0.589 6.589 21 C -0.013 4.013 22 C -0.038 4.038 23 C -0.016 4.016 24 C -0.163 4.163 25 C -0.154 4.154 26 C -0.005 4.005 27 N -0.398 5.398 28 C 0.318 3.682 29 N -0.487 5.487 30 H 0.250 0.750 31 H -0.013 1.013 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.061 0.939 38 H -0.024 1.024 39 H 0.157 0.843 40 H 0.165 0.835 41 H 0.184 0.816 42 H 0.218 0.782 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.363 -10.096 15.667 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.241 4.241 3 Si 0.794 3.206 4 H -0.207 1.207 5 H -0.194 1.194 6 H -0.228 1.228 7 C -0.389 4.389 8 H 0.090 0.910 9 N -0.322 5.322 10 C 0.011 3.989 11 C 0.010 3.990 12 H 0.114 0.886 13 C -0.139 4.139 14 C -0.149 4.149 15 C -0.001 4.001 16 H 0.161 0.839 17 C 0.069 3.931 18 N -0.319 5.319 19 C 0.373 3.627 20 O -0.472 6.472 21 C -0.129 4.129 22 C -0.060 4.060 23 C -0.120 4.120 24 C -0.189 4.189 25 C -0.176 4.176 26 C -0.136 4.136 27 N -0.071 5.071 28 C 0.036 3.964 29 N -0.200 5.200 30 H 0.059 0.941 31 H 0.005 0.995 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.080 0.920 38 H -0.006 1.006 39 H 0.174 0.826 40 H 0.182 0.818 41 H 0.201 0.799 42 H 0.234 0.766 43 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -7.519 -9.751 15.049 19.444 hybrid contribution -0.277 0.326 -0.893 0.990 sum -7.796 -9.426 14.156 18.709 Atomic orbital electron populations 1.70275 1.06843 1.25893 1.55011 1.25703 0.95759 1.01392 1.01232 0.85287 0.78187 0.79625 0.77546 1.20727 1.19366 1.22818 1.19498 0.94768 0.86242 1.38426 0.91040 1.44350 1.39145 1.00814 1.47913 1.21501 0.97668 0.86255 0.93427 1.22868 0.83062 0.99011 0.94109 0.88613 1.22538 0.96640 0.98339 0.96417 1.22598 0.93202 1.00571 0.98503 1.23642 0.99913 0.80098 0.96483 0.83940 1.20771 0.87560 0.96492 0.88302 1.49053 1.18278 1.14578 1.50000 1.17497 0.82515 0.81832 0.80891 1.90724 1.77909 1.31664 1.46863 1.20433 0.97400 0.91458 1.03583 1.21638 0.90428 0.99602 0.94366 1.18991 0.99539 0.88510 1.04912 1.21588 0.93723 1.00476 1.03114 1.21522 1.01760 0.92900 1.01453 1.22873 0.86492 1.01749 1.02486 1.43415 1.18552 1.10445 1.34704 1.25746 0.83581 0.93316 0.93800 1.68181 1.17678 1.23327 1.10799 0.94135 0.99533 0.90761 0.90067 0.90306 0.91268 0.90303 0.92044 1.00632 0.82585 0.81754 0.79892 0.76576 0.73414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.08 11.51 21.65 0.25 -54.83 16 2 C -0.05 -2.47 4.79 84.86 0.41 -2.07 16 3 Si 0.97 43.89 29.61 68.60 2.03 45.92 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 7 C -0.26 -14.00 9.60 84.03 0.81 -13.20 16 8 H 0.07 3.74 7.91 -2.91 -0.02 3.72 16 9 N -0.60 -30.32 2.29 -696.06 -1.60 -31.92 16 10 C 0.14 6.26 6.01 86.55 0.52 6.78 16 11 C 0.11 4.38 4.07 45.47 0.18 4.57 16 12 H 0.10 3.54 7.95 -2.38 -0.02 3.52 16 13 C -0.10 -3.32 6.31 32.11 0.20 -3.12 16 14 C -0.11 -3.74 6.22 32.11 0.20 -3.54 16 15 C 0.10 3.95 3.67 45.31 0.17 4.12 16 16 H 0.14 5.06 5.04 -2.38 -0.01 5.05 16 17 C 0.20 9.54 4.60 86.40 0.40 9.94 16 18 N -0.59 -23.75 2.75 -761.27 -2.09 -25.84 16 19 C 0.58 23.99 7.87 86.62 0.68 24.68 16 20 O -0.59 -26.70 16.68 -4.19 -0.07 -26.77 16 21 C -0.01 -0.45 6.75 40.98 0.28 -0.18 16 22 C -0.04 -1.13 9.72 22.91 0.22 -0.90 16 23 C -0.02 -0.39 6.78 38.69 0.26 -0.13 16 24 C -0.16 -2.96 10.98 22.62 0.25 -2.72 16 25 C -0.15 -1.98 10.80 22.01 0.24 -1.74 16 26 C 0.00 -0.06 11.61 83.46 0.97 0.91 16 27 N -0.40 -7.97 2.95 -350.61 -1.04 -9.01 16 28 C 0.32 6.74 12.16 179.86 2.19 8.92 16 29 N -0.49 -14.81 6.67 -186.88 -1.25 -16.05 16 30 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 31 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 32 H 0.07 3.12 7.96 -2.39 -0.02 3.10 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.08 2.67 7.84 -2.39 -0.02 2.66 16 35 H 0.07 2.58 7.83 -2.39 -0.02 2.56 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.06 3.25 6.46 -2.39 -0.02 3.24 16 38 H -0.02 -1.39 8.14 -2.38 -0.02 -1.41 16 39 H 0.16 4.54 7.67 -2.91 -0.02 4.51 16 40 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 41 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16 42 H 0.22 0.82 8.06 -2.91 -0.02 0.79 16 43 H 0.25 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -76.31 347.48 5.24 -71.07 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 1.03 Total: 15.10 kcal Atomic # 6 Polarization: 24.35 SS G_CDS: 7.97 Total: 32.32 kcal Atomic # 7 Polarization: -131.92 SS G_CDS: -5.72 Total: -137.65 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.07 Total: -26.77 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -76.31 5.24 -71.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017651852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.459 kcal (2) G-P(sol) polarization free energy of solvation -76.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds