Wall clock time and date at job start Tue Mar 31 2020 14:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99761 * 2 1 4 4 H 1.48497 * 109.46893 * 270.00098 * 3 2 1 5 5 H 1.48501 * 109.47021 * 29.99189 * 3 2 1 6 6 H 1.48490 * 109.47252 * 149.99732 * 3 2 1 7 7 C 1.38809 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00139 * 166.61044 * 7 2 1 9 9 N 1.36937 * 119.99818 * 346.60214 * 7 2 1 10 10 C 1.46348 * 120.77685 * 153.48564 * 9 7 2 11 11 C 1.53890 * 108.16011 * 132.71368 * 10 9 7 12 12 H 1.08995 * 112.57797 * 182.36728 * 11 10 9 13 13 C 1.54550 * 107.82610 * 306.65025 * 11 10 9 14 14 C 1.54279 * 104.84635 * 89.06865 * 13 11 10 15 15 C 1.54956 * 104.81177 * 359.81072 * 14 13 11 16 16 H 1.09000 * 112.25961 * 146.60733 * 15 14 13 17 17 C 1.47165 * 120.71126 * 333.78842 * 9 7 2 18 18 N 1.48306 * 107.20605 * 58.50626 * 11 10 9 19 19 C 1.34777 * 128.07947 * 106.70651 * 18 11 10 20 20 O 1.21650 * 119.99709 * 3.84155 * 19 18 11 21 21 C 1.47161 * 120.00089 * 183.83562 * 19 18 11 22 22 C 1.38586 * 120.72639 * 24.47540 * 21 19 18 23 23 C 1.38933 * 121.36028 * 179.97438 * 22 21 19 24 24 C 1.35822 * 122.59919 * 359.97438 * 23 22 21 25 25 C 1.40849 * 120.55909 * 359.97438 * 24 23 22 26 26 C 1.38417 * 134.90145 * 180.02562 * 25 24 23 27 27 N 1.33895 * 107.84650 * 179.97438 * 26 25 24 28 28 H 0.96997 * 125.01803 * 179.97438 * 27 26 25 29 29 N 1.39977 * 109.95867 * 359.80855 * 27 26 25 30 30 C 1.31479 * 109.01905 * 0.33361 * 29 27 26 31 31 H 0.96995 * 120.00403 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.56727 * 13.10801 * 10 9 7 33 33 H 1.08998 * 109.81119 * 252.45784 * 10 9 7 34 34 H 1.09000 * 110.35850 * 207.91165 * 13 11 10 35 35 H 1.09001 * 110.36173 * 330.11472 * 13 11 10 36 36 H 1.09000 * 110.36458 * 118.84509 * 14 13 11 37 37 H 1.08998 * 110.36410 * 241.04650 * 14 13 11 38 38 H 1.08999 * 109.75194 * 107.60605 * 17 9 7 39 39 H 1.08994 * 109.79089 * 346.89771 * 17 9 7 40 40 H 1.07991 * 119.32008 * 359.97438 * 22 21 19 41 41 H 1.08000 * 118.69996 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.72529 * 180.02562 * 24 23 22 43 43 H 1.08001 * 126.07721 * 0.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4474 2.6528 0.6999 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0683 -1.2148 -0.2160 9 7 1.3537 -2.3717 0.2759 10 6 1.8431 -3.6469 -0.2497 11 6 1.8550 -4.6675 0.9020 12 1 2.2485 -5.6373 0.5978 13 6 2.6577 -4.0526 2.0708 14 6 1.6149 -3.2756 2.9009 15 6 0.2747 -3.4887 2.1530 16 1 -0.5758 -3.5307 2.8335 17 6 0.1357 -2.3734 1.1018 18 7 0.4679 -4.7625 1.4183 19 6 -0.4133 -5.7688 1.2535 20 8 -0.0765 -6.7831 0.6723 21 6 -1.7828 -5.6408 1.7766 22 6 -2.3510 -4.3925 1.9755 23 6 -3.6428 -4.2563 2.4682 24 6 -4.4225 -5.3232 2.7822 25 6 -3.9404 -6.6361 2.6159 26 6 -4.4579 -7.9016 2.8317 27 7 -3.5207 -8.7928 2.4848 28 1 -3.6220 -9.7560 2.5373 29 7 -2.3747 -8.1291 2.0317 30 6 -2.5772 -6.8316 2.0962 31 1 -0.4850 0.8400 -0.0004 32 1 2.8534 -3.5180 -0.6381 33 1 1.1841 -3.9962 -1.0445 34 1 3.1128 -4.8387 2.6733 35 1 3.4230 -3.3759 1.6907 36 1 1.5573 -3.6796 3.9117 37 1 1.8673 -2.2156 2.9308 38 1 -0.7347 -2.5651 0.4743 39 1 0.0259 -1.4099 1.5994 40 1 -1.7777 -3.5074 1.7428 41 1 -4.0429 -3.2628 2.6071 42 1 -5.4209 -5.1635 3.1617 43 1 -5.4428 -8.1297 3.2115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017785582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:34 Heat of formation + Delta-G solvation = 117.754844 kcal Electronic energy + Delta-G solvation = -28406.164897 eV Core-core repulsion = 24647.615067 eV Total energy + Delta-G solvation = -3758.549830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.25801 -40.09735 -37.65821 -36.68678 -34.08636 -32.31610 -31.60044 -30.84667 -30.53690 -30.02326 -28.73352 -26.33961 -24.64465 -23.63827 -23.10405 -22.02464 -21.70004 -20.30893 -19.70635 -18.41034 -18.06061 -17.49826 -16.46578 -15.88985 -15.67974 -15.14042 -14.93219 -14.83453 -14.37529 -14.27497 -13.85784 -13.42314 -13.33483 -13.09654 -12.79388 -12.63295 -12.16948 -11.93557 -11.88359 -11.73095 -11.47830 -11.45636 -10.98757 -10.84335 -10.53446 -10.46807 -10.41740 -10.25460 -10.22476 -10.00488 -9.78755 -9.63578 -9.24623 -8.80459 -8.56575 -8.13413 -7.60912 -6.69192 -5.82726 -3.25668 0.39449 1.83221 2.24870 2.59655 3.29677 3.35394 3.42697 3.43093 3.46584 4.03464 4.22177 4.45121 4.46350 4.88202 5.05466 5.13945 5.17785 5.27547 5.34842 5.36246 5.46661 5.48354 5.63116 5.73032 5.83322 5.91027 5.96514 6.18746 6.23196 6.32757 6.35700 6.39746 6.46553 6.49427 6.57357 6.61530 6.81491 6.84064 6.90419 6.96520 7.04313 7.21613 7.46761 7.59048 7.73280 8.22182 8.36321 8.76203 9.14995 9.77489 10.34093 11.25509 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.019788 B = 0.003877 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.645987 B = 7219.850280 C = 8094.345536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.248 4.248 8 H 0.069 0.931 9 N -0.585 5.585 10 C 0.139 3.861 11 C 0.117 3.883 12 H 0.090 0.910 13 C -0.112 4.112 14 C -0.112 4.112 15 C 0.082 3.918 16 H 0.094 0.906 17 C 0.168 3.832 18 N -0.602 5.602 19 C 0.576 3.424 20 O -0.545 6.545 21 C -0.110 4.110 22 C -0.045 4.045 23 C -0.159 4.159 24 C -0.026 4.026 25 C -0.216 4.216 26 C 0.083 3.917 27 N -0.434 5.434 28 H 0.442 0.558 29 N -0.276 5.276 30 C 0.138 3.862 31 H 0.255 0.745 32 H 0.063 0.937 33 H 0.020 0.980 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.026 0.974 39 H 0.099 0.901 40 H 0.157 0.843 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.249 -11.009 9.747 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.086 0.914 9 N -0.308 5.308 10 C 0.012 3.988 11 C 0.012 3.988 12 H 0.108 0.892 13 C -0.150 4.150 14 C -0.150 4.150 15 C -0.022 4.022 16 H 0.111 0.889 17 C 0.041 3.959 18 N -0.335 5.335 19 C 0.366 3.634 20 O -0.424 6.424 21 C -0.116 4.116 22 C -0.068 4.068 23 C -0.178 4.178 24 C -0.046 4.046 25 C -0.227 4.227 26 C -0.074 4.074 27 N -0.134 5.134 28 H 0.286 0.714 29 N -0.102 5.102 30 C -0.020 4.020 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.044 0.956 39 H 0.117 0.883 40 H 0.174 0.826 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -8.345 -12.427 9.078 17.507 hybrid contribution -0.464 0.983 0.155 1.098 sum -8.809 -11.443 9.233 17.141 Atomic orbital electron populations 1.69966 1.05157 1.25543 1.54580 1.25022 0.95379 0.98250 1.00884 0.86273 0.79049 0.83595 0.77709 1.21501 1.21592 1.20490 1.19184 0.91630 0.83946 1.43008 0.91363 1.43821 1.29023 1.01768 1.56159 1.21312 0.98306 0.86685 0.92538 1.22900 0.80928 0.99089 0.95853 0.89238 1.22300 0.97996 0.98664 0.96047 1.22378 0.94186 1.01771 0.96663 1.23819 0.98106 0.84844 0.95446 0.88875 1.21397 0.88677 0.95593 0.90191 1.49078 1.14108 1.17826 1.52457 1.17475 0.83914 0.82035 0.79995 1.90775 1.78871 1.28900 1.43853 1.19818 0.94156 0.89932 1.07681 1.22101 0.95298 0.97080 0.92280 1.20463 0.94544 0.99176 1.03631 1.20255 0.98820 0.89696 0.95850 1.19594 0.95740 0.93830 1.13494 1.22689 0.95673 0.89110 0.99956 1.46504 1.10703 1.09862 1.46356 0.71378 1.77800 1.02995 1.05664 1.23771 1.21535 0.92920 0.90844 0.96679 0.93526 0.91864 0.96205 0.92987 0.89975 0.93077 0.89527 0.95578 0.88330 0.82603 0.85199 0.85748 0.79520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.67 10.97 55.49 0.61 -24.06 16 2 C 0.00 0.07 5.02 -17.43 -0.09 -0.01 16 3 Si 0.90 20.68 29.57 -169.99 -5.03 15.65 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.25 -6.36 9.64 -15.06 -0.15 -6.50 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 N -0.58 -13.77 2.26 -171.74 -0.39 -14.16 16 10 C 0.14 2.97 5.98 -3.66 -0.02 2.94 16 11 C 0.12 2.23 4.13 -65.66 -0.27 1.96 16 12 H 0.09 1.70 7.91 -51.93 -0.41 1.29 16 13 C -0.11 -1.91 6.18 -25.25 -0.16 -2.07 16 14 C -0.11 -1.91 6.21 -25.03 -0.16 -2.06 16 15 C 0.08 1.50 2.94 -65.44 -0.19 1.31 16 16 H 0.09 1.52 5.46 -51.93 -0.28 1.24 16 17 C 0.17 3.69 4.00 -3.22 -0.01 3.68 16 18 N -0.60 -11.84 2.74 -154.12 -0.42 -12.26 16 19 C 0.58 12.09 7.72 -12.64 -0.10 11.99 16 20 O -0.54 -13.05 16.94 5.23 0.09 -12.96 16 21 C -0.11 -2.01 5.92 -102.74 -0.61 -2.62 16 22 C -0.05 -0.72 7.94 -39.20 -0.31 -1.03 16 23 C -0.16 -2.00 9.83 -40.19 -0.39 -2.40 16 24 C -0.03 -0.29 10.02 -39.46 -0.40 -0.68 16 25 C -0.22 -2.77 6.34 -105.21 -0.67 -3.44 16 26 C 0.08 0.74 12.08 -16.59 -0.20 0.54 16 27 N -0.43 -4.57 7.18 30.86 0.22 -4.35 16 28 H 0.44 2.76 8.96 -182.69 -1.64 1.13 16 29 N -0.28 -4.67 12.48 34.36 0.43 -4.24 16 30 C 0.14 2.38 7.29 -80.98 -0.59 1.79 16 31 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.06 1.27 7.94 -51.93 -0.41 0.86 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.44 7.84 -51.93 -0.41 1.03 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.59 7.85 -51.93 -0.41 1.18 16 38 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 39 H 0.10 2.35 6.21 -51.93 -0.32 2.03 16 40 H 0.16 2.59 3.46 -52.49 -0.18 2.41 16 41 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.19 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 342.23 15.07 5.16 5.16 Total: -1.00 -34.56 342.23 -10.16 -44.71 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.52 Total: 3.10 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -4.31 Total: 3.40 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.45 Total: -59.05 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.96 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.56 -10.16 -44.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017785582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.469 kcal (2) G-P(sol) polarization free energy of solvation -34.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds