Wall clock time and date at job start Tue Mar 31 2020 14:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99761 * 2 1 4 4 H 1.48497 * 109.46893 * 270.00098 * 3 2 1 5 5 H 1.48501 * 109.47021 * 29.99189 * 3 2 1 6 6 H 1.48490 * 109.47252 * 149.99732 * 3 2 1 7 7 C 1.38809 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00139 * 166.61044 * 7 2 1 9 9 N 1.36937 * 119.99818 * 346.60214 * 7 2 1 10 10 C 1.46348 * 120.77685 * 153.48564 * 9 7 2 11 11 C 1.53890 * 108.16011 * 132.71368 * 10 9 7 12 12 H 1.08995 * 112.57797 * 182.36728 * 11 10 9 13 13 C 1.54550 * 107.82610 * 306.65025 * 11 10 9 14 14 C 1.54279 * 104.84635 * 89.06865 * 13 11 10 15 15 C 1.54956 * 104.81177 * 359.81072 * 14 13 11 16 16 H 1.09000 * 112.25961 * 146.60733 * 15 14 13 17 17 C 1.47165 * 120.71126 * 333.78842 * 9 7 2 18 18 N 1.48306 * 107.20605 * 58.50626 * 11 10 9 19 19 C 1.34777 * 128.07947 * 106.70651 * 18 11 10 20 20 O 1.21650 * 119.99709 * 3.84155 * 19 18 11 21 21 C 1.47161 * 120.00089 * 183.83562 * 19 18 11 22 22 C 1.38586 * 120.72639 * 24.47540 * 21 19 18 23 23 C 1.38933 * 121.36028 * 179.97438 * 22 21 19 24 24 C 1.35822 * 122.59919 * 359.97438 * 23 22 21 25 25 C 1.40849 * 120.55909 * 359.97438 * 24 23 22 26 26 C 1.38417 * 134.90145 * 180.02562 * 25 24 23 27 27 N 1.33895 * 107.84650 * 179.97438 * 26 25 24 28 28 H 0.96997 * 125.01803 * 179.97438 * 27 26 25 29 29 N 1.39977 * 109.95867 * 359.80855 * 27 26 25 30 30 C 1.31479 * 109.01905 * 0.33361 * 29 27 26 31 31 H 0.96995 * 120.00403 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.56727 * 13.10801 * 10 9 7 33 33 H 1.08998 * 109.81119 * 252.45784 * 10 9 7 34 34 H 1.09000 * 110.35850 * 207.91165 * 13 11 10 35 35 H 1.09001 * 110.36173 * 330.11472 * 13 11 10 36 36 H 1.09000 * 110.36458 * 118.84509 * 14 13 11 37 37 H 1.08998 * 110.36410 * 241.04650 * 14 13 11 38 38 H 1.08999 * 109.75194 * 107.60605 * 17 9 7 39 39 H 1.08994 * 109.79089 * 346.89771 * 17 9 7 40 40 H 1.07991 * 119.32008 * 359.97438 * 22 21 19 41 41 H 1.08000 * 118.69996 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.72529 * 180.02562 * 24 23 22 43 43 H 1.08001 * 126.07721 * 0.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4474 2.6528 0.6999 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0683 -1.2148 -0.2160 9 7 1.3537 -2.3717 0.2759 10 6 1.8431 -3.6469 -0.2497 11 6 1.8550 -4.6675 0.9020 12 1 2.2485 -5.6373 0.5978 13 6 2.6577 -4.0526 2.0708 14 6 1.6149 -3.2756 2.9009 15 6 0.2747 -3.4887 2.1530 16 1 -0.5758 -3.5307 2.8335 17 6 0.1357 -2.3734 1.1018 18 7 0.4679 -4.7625 1.4183 19 6 -0.4133 -5.7688 1.2535 20 8 -0.0765 -6.7831 0.6723 21 6 -1.7828 -5.6408 1.7766 22 6 -2.3510 -4.3925 1.9755 23 6 -3.6428 -4.2563 2.4682 24 6 -4.4225 -5.3232 2.7822 25 6 -3.9404 -6.6361 2.6159 26 6 -4.4579 -7.9016 2.8317 27 7 -3.5207 -8.7928 2.4848 28 1 -3.6220 -9.7560 2.5373 29 7 -2.3747 -8.1291 2.0317 30 6 -2.5772 -6.8316 2.0962 31 1 -0.4850 0.8400 -0.0004 32 1 2.8534 -3.5180 -0.6381 33 1 1.1841 -3.9962 -1.0445 34 1 3.1128 -4.8387 2.6733 35 1 3.4230 -3.3759 1.6907 36 1 1.5573 -3.6796 3.9117 37 1 1.8673 -2.2156 2.9308 38 1 -0.7347 -2.5651 0.4743 39 1 0.0259 -1.4099 1.5994 40 1 -1.7777 -3.5074 1.7428 41 1 -4.0429 -3.2628 2.6071 42 1 -5.4209 -5.1635 3.1617 43 1 -5.4428 -8.1297 3.2115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017785582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:33 Heat of formation + Delta-G solvation = 94.636498 kcal Electronic energy + Delta-G solvation = -28407.167384 eV Core-core repulsion = 24647.615067 eV Total energy + Delta-G solvation = -3759.552317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.26991 -41.59633 -39.19378 -37.81629 -35.93006 -33.66478 -32.87126 -32.43727 -32.14582 -31.26078 -29.79147 -28.13315 -25.89027 -25.27908 -24.61216 -23.42161 -22.78039 -21.78800 -21.02954 -19.80183 -19.33503 -18.68267 -17.94695 -17.34290 -17.10300 -16.65308 -16.40845 -16.01227 -15.78982 -15.56537 -15.23381 -15.07582 -14.86942 -14.53791 -14.28691 -13.92113 -13.64501 -13.56523 -13.20531 -13.07118 -12.86756 -12.72666 -12.66575 -12.52820 -12.17769 -12.09018 -12.01577 -11.70740 -11.53038 -11.49071 -11.27477 -11.15892 -10.73970 -10.55256 -9.84771 -9.79420 -8.69401 -8.56956 -7.81762 -5.28807 -0.59660 0.84626 1.17698 1.52444 1.54522 1.63190 1.79436 2.00767 2.03517 2.55062 2.86574 3.26258 3.33846 3.44040 3.55629 3.76957 3.86671 3.98690 4.12210 4.16141 4.23853 4.25331 4.37800 4.43493 4.48863 4.59343 4.61530 4.70404 4.79125 4.87542 4.94799 5.05248 5.06971 5.14659 5.26617 5.35579 5.40036 5.42465 5.57320 5.60117 5.61541 5.70007 5.90637 6.30495 6.38856 6.61365 6.68457 7.16527 7.20908 7.83024 8.37842 9.24288 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.019788 B = 0.003877 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.645987 B = 7219.850280 C = 8094.345536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.044 4.044 3 Si 0.968 3.032 4 H -0.293 1.293 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.257 4.257 8 H 0.072 0.928 9 N -0.595 5.595 10 C 0.141 3.859 11 C 0.116 3.884 12 H 0.088 0.912 13 C -0.102 4.102 14 C -0.107 4.107 15 C 0.095 3.905 16 H 0.114 0.886 17 C 0.182 3.818 18 N -0.605 5.605 19 C 0.569 3.431 20 O -0.591 6.591 21 C -0.168 4.168 22 C -0.028 4.028 23 C -0.194 4.194 24 C 0.020 3.980 25 C -0.251 4.251 26 C 0.141 3.859 27 N -0.421 5.421 28 H 0.460 0.540 29 N -0.348 5.348 30 C 0.113 3.887 31 H 0.251 0.749 32 H 0.073 0.927 33 H -0.011 1.011 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.075 0.925 38 H -0.006 1.006 39 H 0.080 0.920 40 H 0.137 0.863 41 H 0.153 0.847 42 H 0.178 0.822 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.725 -11.688 12.440 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.239 4.239 3 Si 0.796 3.204 4 H -0.220 1.220 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.387 4.387 8 H 0.089 0.911 9 N -0.318 5.318 10 C 0.014 3.986 11 C 0.011 3.989 12 H 0.106 0.894 13 C -0.140 4.140 14 C -0.145 4.145 15 C -0.009 4.009 16 H 0.132 0.868 17 C 0.056 3.944 18 N -0.337 5.337 19 C 0.361 3.639 20 O -0.473 6.473 21 C -0.174 4.174 22 C -0.050 4.050 23 C -0.213 4.213 24 C 0.000 4.000 25 C -0.261 4.261 26 C -0.018 4.018 27 N -0.122 5.122 28 H 0.308 0.692 29 N -0.175 5.175 30 C -0.044 4.044 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.006 0.994 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.012 0.988 39 H 0.098 0.902 40 H 0.154 0.846 41 H 0.171 0.829 42 H 0.195 0.805 43 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -10.790 -13.126 11.783 20.677 hybrid contribution 0.070 1.041 -0.694 1.253 sum -10.720 -12.085 11.088 19.594 Atomic orbital electron populations 1.70128 1.06427 1.25889 1.55734 1.25715 0.96086 1.01047 1.01064 0.85275 0.78209 0.79743 0.77150 1.22048 1.21762 1.19309 1.19489 0.91970 0.84747 1.42466 0.91060 1.44023 1.29233 1.01951 1.56609 1.21324 0.97898 0.86606 0.92793 1.22832 0.81701 0.98328 0.95994 0.89369 1.22246 0.97531 0.99058 0.95202 1.22363 0.92978 1.01265 0.97891 1.23652 0.99920 0.82818 0.94489 0.86837 1.21142 0.87022 0.96023 0.90244 1.49159 1.14075 1.17983 1.52451 1.18123 0.85178 0.81420 0.79148 1.90710 1.79999 1.30649 1.45969 1.19666 0.93409 0.91831 1.12532 1.22050 0.96607 0.95390 0.90956 1.20681 0.93610 1.01213 1.05843 1.20817 0.99996 0.88214 0.91007 1.20122 0.94379 0.96203 1.15375 1.23772 0.96638 0.86897 0.94531 1.46560 1.09678 1.11145 1.44771 0.69221 1.77706 1.06348 1.06255 1.27229 1.21702 0.94865 0.90690 0.97097 0.93928 0.90857 0.99351 0.90649 0.90260 0.90245 0.90610 0.98778 0.90182 0.84559 0.82886 0.80490 0.72674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.49 10.97 21.65 0.24 -52.26 16 2 C -0.04 -2.32 5.02 84.86 0.43 -1.90 16 3 Si 0.97 43.04 29.57 68.60 2.03 45.07 16 4 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.26 -13.47 9.64 84.03 0.81 -12.66 16 8 H 0.07 3.63 7.85 -2.91 -0.02 3.61 16 9 N -0.60 -29.24 2.26 -697.26 -1.58 -30.82 16 10 C 0.14 6.36 5.98 86.71 0.52 6.88 16 11 C 0.12 4.63 4.13 45.47 0.19 4.82 16 12 H 0.09 3.53 7.91 -2.39 -0.02 3.51 16 13 C -0.10 -3.46 6.18 31.55 0.20 -3.27 16 14 C -0.11 -3.61 6.21 31.70 0.20 -3.41 16 15 C 0.10 3.59 2.94 45.61 0.13 3.72 16 16 H 0.11 3.82 5.46 -2.39 -0.01 3.81 16 17 C 0.18 8.43 4.00 86.55 0.35 8.78 16 18 N -0.61 -25.08 2.74 -759.77 -2.08 -27.16 16 19 C 0.57 25.54 7.72 86.59 0.67 26.21 16 20 O -0.59 -30.48 16.94 -4.19 -0.07 -30.55 16 21 C -0.17 -6.45 5.92 -18.65 -0.11 -6.56 16 22 C -0.03 -0.91 7.94 22.52 0.18 -0.73 16 23 C -0.19 -4.56 9.83 21.88 0.21 -4.34 16 24 C 0.02 0.35 10.02 22.35 0.22 0.58 16 25 C -0.25 -5.56 6.34 -20.24 -0.13 -5.69 16 26 C 0.14 1.74 12.08 84.42 1.02 2.76 16 27 N -0.42 -7.63 7.18 -56.29 -0.40 -8.04 16 28 H 0.46 4.31 8.96 -213.40 -1.91 2.40 16 29 N -0.35 -11.83 12.48 -45.22 -0.56 -12.39 16 30 C 0.11 3.91 7.29 43.75 0.32 4.23 16 31 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 32 H 0.07 3.09 7.94 -2.39 -0.02 3.07 16 33 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.08 2.75 7.84 -2.39 -0.02 2.73 16 36 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.08 2.75 7.85 -2.39 -0.02 2.74 16 38 H -0.01 -0.30 7.13 -2.39 -0.02 -0.31 16 39 H 0.08 4.00 6.21 -2.39 -0.01 3.99 16 40 H 0.14 4.83 3.46 -2.92 -0.01 4.82 16 41 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 42 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 43 H 0.26 -0.49 8.06 -2.91 -0.02 -0.52 16 Total: -1.00 -83.38 342.23 1.92 -81.46 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -0.84 Total: 15.27 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: 5.20 Total: 19.42 kcal Atomic # 7 Polarization: -126.27 SS G_CDS: -4.39 Total: -130.67 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.07 Total: -30.55 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -83.38 1.92 -81.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017785582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.098 kcal (2) G-P(sol) polarization free energy of solvation -83.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds