Wall clock time and date at job start Tue Mar 31 2020 15:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99608 * 2 1 4 4 H 1.48498 * 109.46907 * 274.95781 * 3 2 1 5 5 H 1.48498 * 109.47263 * 34.96274 * 3 2 1 6 6 H 1.48494 * 109.46761 * 154.96077 * 3 2 1 7 7 C 1.38806 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99783 * 155.72457 * 7 2 1 9 9 N 1.36940 * 120.00131 * 335.72832 * 7 2 1 10 10 C 1.47170 * 120.70730 * 153.46368 * 9 7 2 11 11 C 1.53887 * 108.02747 * 132.75171 * 10 9 7 12 12 H 1.09000 * 112.58038 * 182.22162 * 11 10 9 13 13 C 1.54135 * 107.71148 * 306.32552 * 11 10 9 14 14 C 1.54278 * 104.89046 * 89.40898 * 13 11 10 15 15 C 1.54541 * 104.85012 * 359.81041 * 14 13 11 16 16 H 1.09003 * 112.18792 * 146.40924 * 15 14 13 17 17 C 1.49243 * 120.76829 * 333.54554 * 9 7 2 18 18 N 1.48307 * 104.35916 * 24.70022 * 15 14 13 19 19 C 1.34773 * 128.07964 * 139.07971 * 18 15 14 20 20 O 1.21593 * 120.00148 * 5.01093 * 19 18 15 21 21 C 1.47525 * 120.00495 * 185.01168 * 19 18 15 22 22 C 1.39440 * 120.24483 * 319.27658 * 21 19 18 23 23 C 1.38290 * 120.27892 * 179.70063 * 22 21 19 24 24 C 1.37884 * 120.72925 * 0.26949 * 23 22 21 25 25 C 1.39679 * 120.10283 * 0.02562 * 24 23 22 26 26 N 1.35859 * 133.50811 * 179.97438 * 25 24 23 27 27 C 1.30093 * 109.53273 * 180.02562 * 26 25 24 28 28 N 1.36116 * 110.05112 * 0.02562 * 27 26 25 29 29 H 0.97002 * 126.30970 * 179.97438 * 28 27 26 30 30 C 1.37512 * 107.38388 * 359.97438 * 28 27 26 31 31 H 0.97000 * 120.00308 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.74920 * 13.11870 * 10 9 7 33 33 H 1.08998 * 109.79048 * 252.40831 * 10 9 7 34 34 H 1.08999 * 110.50365 * 330.47377 * 13 11 10 35 35 H 1.08996 * 110.27688 * 208.23370 * 13 11 10 36 36 H 1.08999 * 110.36715 * 240.96243 * 14 13 11 37 37 H 1.09004 * 110.45311 * 118.69733 * 14 13 11 38 38 H 1.09002 * 110.51518 * 107.82567 * 17 9 7 39 39 H 1.08997 * 109.74956 * 346.60073 * 17 9 7 40 40 H 1.07997 * 119.86161 * 359.97013 * 22 21 19 41 41 H 1.08005 * 119.63436 * 180.29378 * 23 22 21 42 42 H 1.07995 * 119.94639 * 180.02562 * 24 23 22 43 43 H 1.08004 * 124.96844 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3928 2.1070 -1.3948 5 1 1.5040 2.6202 0.8023 6 1 3.5961 1.4123 0.5926 7 6 2.0103 -1.2021 0.0005 8 1 3.0187 -1.2435 -0.3840 9 7 1.4165 -2.3354 0.4885 10 6 1.8264 -3.6649 0.0086 11 6 2.0333 -4.5710 1.2351 12 1 2.3776 -5.5692 0.9647 13 6 3.0142 -3.8568 2.1857 14 6 2.1211 -2.9972 3.1043 15 6 0.6786 -3.2678 2.6202 16 1 -0.0417 -3.2420 3.4379 17 6 0.3384 -2.2502 1.5170 18 7 0.7503 -4.6029 1.9785 19 6 -0.1397 -5.6119 2.0572 20 8 -1.1925 -5.4496 2.6437 21 6 0.1631 -6.9133 1.4319 22 6 0.7770 -6.9655 0.1810 23 6 1.0668 -8.1851 -0.4031 24 6 0.7503 -9.3652 0.2359 25 6 0.1295 -9.3400 1.4868 26 7 -0.2942 -10.3082 2.3405 27 6 -0.8187 -9.7582 3.3963 28 7 -0.7672 -8.4021 3.2904 29 1 -1.0921 -7.7623 3.9431 30 6 -0.1698 -8.1063 2.0878 31 1 -0.4850 0.8400 -0.0004 32 1 2.7585 -3.5834 -0.5505 33 1 1.0486 -4.0824 -0.6308 34 1 3.6991 -3.2234 1.6220 35 1 3.5705 -4.5872 2.7730 36 1 2.3670 -1.9413 2.9924 37 1 2.2363 -3.3047 4.1437 38 1 -0.6290 -2.4931 1.0775 39 1 0.3102 -1.2454 1.9387 40 1 1.0311 -6.0498 -0.3320 41 1 1.5468 -8.2134 -1.3702 42 1 0.9828 -10.3106 -0.2317 43 1 -1.2342 -10.2985 4.2341 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018093607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:11 Heat of formation + Delta-G solvation = 83.152809 kcal Electronic energy + Delta-G solvation = -28419.900790 eV Core-core repulsion = 24659.850503 eV Total energy + Delta-G solvation = -3760.050287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.25388 -40.25506 -37.95555 -37.00190 -34.07185 -33.22298 -31.55048 -31.29689 -30.44650 -29.87575 -29.32269 -26.39556 -24.31979 -23.77392 -22.87482 -22.57176 -21.90127 -20.78662 -20.21594 -18.62308 -17.80766 -17.72141 -16.70826 -16.09504 -15.81820 -15.31468 -15.16554 -15.00866 -14.63815 -14.46029 -13.98818 -13.76060 -13.49632 -13.22292 -12.97810 -12.87519 -12.25575 -12.15407 -12.00523 -11.89818 -11.81546 -11.57145 -11.20222 -10.86393 -10.81570 -10.61187 -10.55888 -10.44830 -10.37472 -10.05781 -9.89398 -9.78519 -9.53173 -8.60965 -8.54797 -8.35224 -8.18619 -6.80862 -5.89630 -3.27266 0.61229 1.39721 2.48633 2.85001 3.08622 3.24528 3.31771 3.40959 3.42227 3.78567 4.10029 4.40549 4.47276 4.75171 4.91645 5.00808 5.10708 5.20124 5.22974 5.25828 5.28809 5.33156 5.47986 5.62783 5.66850 5.73774 5.86306 5.99519 6.04583 6.16035 6.27536 6.28817 6.32753 6.34152 6.35483 6.49961 6.54551 6.64774 6.70894 6.86522 7.11376 7.19647 7.35414 7.67977 7.71169 7.95878 8.25323 8.39778 9.02534 9.70050 10.28897 11.19046 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024868 B = 0.003538 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.673742 B = 7911.075582 C = 8259.685753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.008 3.992 3 Si 0.894 3.106 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.069 0.931 9 N -0.586 5.586 10 C 0.136 3.864 11 C 0.099 3.901 12 H 0.093 0.907 13 C -0.111 4.111 14 C -0.112 4.112 15 C 0.107 3.893 16 H 0.087 0.913 17 C 0.173 3.827 18 N -0.594 5.594 19 C 0.572 3.428 20 O -0.558 6.558 21 C -0.112 4.112 22 C -0.069 4.069 23 C -0.133 4.133 24 C -0.046 4.046 25 C 0.035 3.965 26 N -0.496 5.496 27 C 0.258 3.742 28 N -0.591 5.591 29 H 0.430 0.570 30 C 0.093 3.907 31 H 0.255 0.745 32 H 0.067 0.933 33 H 0.019 0.981 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.031 0.969 39 H 0.083 0.917 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.132 0.868 43 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 -15.873 5.506 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.191 4.191 3 Si 0.723 3.277 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.389 4.389 8 H 0.086 0.914 9 N -0.310 5.310 10 C 0.009 3.991 11 C -0.006 4.006 12 H 0.111 0.889 13 C -0.149 4.149 14 C -0.150 4.150 15 C 0.004 3.996 16 H 0.105 0.895 17 C 0.047 3.953 18 N -0.325 5.325 19 C 0.362 3.638 20 O -0.439 6.439 21 C -0.118 4.118 22 C -0.089 4.089 23 C -0.154 4.154 24 C -0.066 4.066 25 C -0.083 4.083 26 N -0.216 5.216 27 C -0.029 4.029 28 N -0.201 5.201 29 H 0.270 0.730 30 C -0.020 4.020 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.037 0.963 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.101 0.899 40 H 0.162 0.838 41 H 0.155 0.845 42 H 0.150 0.850 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.921 -16.590 5.611 17.755 hybrid contribution -0.047 2.070 0.456 2.120 sum 2.874 -14.520 6.067 15.997 Atomic orbital electron populations 1.70130 1.05415 1.25807 1.52210 1.24972 0.94990 0.98544 1.00645 0.86424 0.79504 0.84042 0.77686 1.21491 1.21569 1.20302 1.19069 0.95491 0.85806 1.38495 0.91364 1.44561 1.42728 1.00103 1.43581 1.21486 0.98493 0.87163 0.91938 1.23201 0.83283 0.99434 0.94641 0.88886 1.22233 0.97333 0.98151 0.97227 1.22315 0.93887 1.01740 0.97077 1.23202 0.97326 0.82092 0.96994 0.89511 1.21556 0.90550 0.96260 0.86916 1.49128 1.20789 1.14056 1.48563 1.17740 0.83119 0.82719 0.80269 1.90744 1.24008 1.83061 1.46046 1.18829 1.05789 0.90371 0.96855 1.21502 0.94933 0.99376 0.93091 1.20878 1.02524 0.91170 1.00800 1.20409 0.95892 0.98940 0.91373 1.19011 1.04605 0.87881 0.96787 1.70498 1.17196 1.31352 1.02535 1.25386 0.98635 0.80037 0.98856 1.43164 1.50346 1.08928 1.17690 0.73030 1.18565 0.99892 0.95331 0.88220 0.93532 0.91483 0.96283 0.89641 0.92902 0.89357 0.93082 0.95093 0.89921 0.83828 0.84492 0.84983 0.76660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.07 11.73 55.49 0.65 -24.42 16 2 C 0.01 0.22 4.74 -17.43 -0.08 0.14 16 3 Si 0.89 20.55 29.62 -169.99 -5.03 15.51 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.26 -6.54 9.58 -15.06 -0.14 -6.68 16 8 H 0.07 1.68 7.93 -52.49 -0.42 1.26 16 9 N -0.59 -13.34 2.30 -169.36 -0.39 -13.73 16 10 C 0.14 2.55 5.63 -3.21 -0.02 2.53 16 11 C 0.10 1.56 2.98 -65.88 -0.20 1.36 16 12 H 0.09 1.25 5.80 -51.93 -0.30 0.95 16 13 C -0.11 -1.68 6.16 -25.47 -0.16 -1.84 16 14 C -0.11 -1.84 6.19 -25.25 -0.16 -1.99 16 15 C 0.11 2.02 4.06 -65.66 -0.27 1.75 16 16 H 0.09 1.63 7.97 -51.93 -0.41 1.22 16 17 C 0.17 3.94 4.81 -2.06 -0.01 3.93 16 18 N -0.59 -10.52 2.74 -154.48 -0.42 -10.95 16 19 C 0.57 10.41 7.53 -12.48 -0.09 10.31 16 20 O -0.56 -11.56 16.97 5.28 0.09 -11.47 16 21 C -0.11 -1.75 5.53 -104.95 -0.58 -2.33 16 22 C -0.07 -0.92 7.77 -39.11 -0.30 -1.23 16 23 C -0.13 -1.47 9.99 -39.69 -0.40 -1.87 16 24 C -0.05 -0.55 10.09 -39.17 -0.40 -0.94 16 25 C 0.03 0.49 7.22 -84.71 -0.61 -0.12 16 26 N -0.50 -6.55 11.28 -12.05 -0.14 -6.69 16 27 C 0.26 2.62 12.97 -89.72 -1.16 1.46 16 28 N -0.59 -7.10 6.17 -11.56 -0.07 -7.17 16 29 H 0.43 4.69 8.69 -40.82 -0.35 4.33 16 30 C 0.09 1.36 6.90 -83.77 -0.58 0.78 16 31 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.07 1.17 7.96 -51.93 -0.41 0.75 16 33 H 0.02 0.38 7.06 -51.93 -0.37 0.01 16 34 H 0.09 1.35 7.83 -51.93 -0.41 0.94 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.59 7.86 -51.93 -0.41 1.18 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.08 2.05 6.66 -51.93 -0.35 1.71 16 40 H 0.14 1.91 4.97 -52.49 -0.26 1.65 16 41 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.22 1.06 8.06 -52.48 -0.42 0.63 16 LS Contribution 343.90 15.07 5.18 5.18 Total: -1.00 -32.56 343.90 -10.64 -43.20 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.36 Total: 5.26 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -5.15 Total: 5.27 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -0.37 Total: -62.96 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.56 -10.64 -43.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018093607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.357 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds