Wall clock time and date at job start Tue Mar 31 2020 15:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00402 * 2 1 4 4 H 1.48499 * 109.47515 * 239.99872 * 3 2 1 5 5 H 1.48503 * 109.47234 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47109 * 119.99737 * 3 2 1 7 7 C 1.38812 * 119.99412 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99787 * 169.83918 * 7 2 1 9 9 N 1.36932 * 120.00382 * 349.83144 * 7 2 1 10 10 C 1.47169 * 120.71306 * 150.91845 * 9 7 2 11 11 C 1.53884 * 108.02830 * 132.75309 * 10 9 7 12 12 H 1.08998 * 112.57733 * 182.22859 * 11 10 9 13 13 C 1.54141 * 107.71252 * 306.32699 * 11 10 9 14 14 C 1.54279 * 104.88683 * 89.41277 * 13 11 10 15 15 C 1.54550 * 104.84991 * 359.80922 * 14 13 11 16 16 H 1.09005 * 112.17821 * 146.41264 * 15 14 13 17 17 C 1.49248 * 120.76978 * 331.00238 * 9 7 2 18 18 N 1.48307 * 104.35765 * 24.70301 * 15 14 13 19 19 C 1.34773 * 128.07747 * 139.08294 * 18 15 14 20 20 O 1.21592 * 119.99830 * 3.89655 * 19 18 15 21 21 C 1.47570 * 120.00125 * 183.90182 * 19 18 15 22 22 C 1.41758 * 120.01210 * 334.07045 * 21 19 18 23 23 C 1.35633 * 119.53976 * 179.97438 * 22 21 19 24 24 C 1.41176 * 119.50386 * 0.02562 * 23 22 21 25 25 N 1.32426 * 132.11243 * 179.97438 * 24 23 22 26 26 C 1.33591 * 109.22261 * 179.97438 * 25 24 23 27 27 C 1.35002 * 108.66121 * 359.97438 * 26 25 24 28 28 N 1.37004 * 107.14349 * 359.97438 * 27 26 25 29 29 C 1.35915 * 132.42410 * 179.97438 * 28 27 26 30 30 H 0.97005 * 119.99645 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.74752 * 13.12312 * 10 9 7 32 32 H 1.08997 * 109.79496 * 252.41252 * 10 9 7 33 33 H 1.09000 * 110.50091 * 330.47759 * 13 11 10 34 34 H 1.08994 * 110.27456 * 208.23518 * 13 11 10 35 35 H 1.08998 * 110.35952 * 240.96503 * 14 13 11 36 36 H 1.08994 * 110.45227 * 118.69922 * 14 13 11 37 37 H 1.09003 * 110.51867 * 107.81988 * 17 9 7 38 38 H 1.09001 * 109.74556 * 346.59904 * 17 9 7 39 39 H 1.07995 * 120.22921 * 359.97438 * 22 21 19 40 40 H 1.08001 * 120.24754 * 180.02562 * 23 22 21 41 41 H 1.07996 * 125.66822 * 179.97438 * 26 25 24 42 42 H 1.08000 * 126.42690 * 180.02562 * 27 26 25 43 43 H 1.08007 * 119.75416 * 0.02972 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0775 -1.2097 -0.1645 9 7 1.3416 -2.3787 0.2104 10 6 1.8306 -3.6363 -0.3771 11 6 1.8210 -4.7116 0.7237 12 1 2.2085 -5.6693 0.3765 13 6 2.6197 -4.1628 1.9224 14 6 1.5787 -3.4209 2.7862 15 6 0.2434 -3.5856 2.0257 16 1 -0.6088 -3.6587 2.7016 17 6 0.1001 -2.4142 1.0381 18 7 0.4278 -4.8178 1.2212 19 6 -0.4610 -5.8061 0.9988 20 8 -1.5946 -5.7123 1.4286 21 6 -0.0586 -7.0021 0.2338 22 6 0.9967 -6.9188 -0.7091 23 6 1.3591 -8.0242 -1.4066 24 6 0.6792 -9.2412 -1.1831 25 7 0.8206 -10.4473 -1.7113 26 6 -0.0726 -11.2752 -1.1624 27 6 -0.8039 -10.5858 -0.2610 28 7 -0.3378 -9.2975 -0.2635 29 6 -0.7001 -8.1900 0.4361 30 1 -0.4850 0.8401 -0.0004 31 1 2.8460 -3.4988 -0.7487 32 1 1.1772 -3.9404 -1.1947 33 1 3.3919 -3.4725 1.5827 34 1 3.0656 -4.9822 2.4860 35 1 1.8391 -2.3659 2.8713 36 1 1.5108 -3.8751 3.7746 37 1 -0.7753 -2.5692 0.4074 38 1 -0.0025 -1.4789 1.5883 39 1 1.5084 -5.9817 -0.8710 40 1 2.1617 -7.9738 -2.1274 41 1 -0.1902 -12.3221 -1.4003 42 1 -1.6053 -10.9767 0.3483 43 1 -1.5033 -8.2496 1.1558 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018157226.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:20 Heat of formation + Delta-G solvation = 100.489208 kcal Electronic energy + Delta-G solvation = -28182.788423 eV Core-core repulsion = 24423.489899 eV Total energy + Delta-G solvation = -3759.298524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.88789 -41.81035 -39.57112 -37.99168 -35.90460 -34.88169 -33.05243 -32.87835 -31.99738 -31.19158 -29.82225 -28.13213 -25.82475 -25.28510 -24.76142 -23.88326 -22.90594 -22.36959 -21.53024 -20.07690 -19.49216 -18.50994 -18.11462 -17.33440 -17.09104 -16.95956 -16.78913 -16.27730 -15.81929 -15.64240 -15.44165 -15.25631 -15.03529 -14.69862 -14.38470 -14.35437 -14.07745 -13.68003 -13.39027 -13.21377 -12.88621 -12.83968 -12.77586 -12.61806 -12.29336 -12.19077 -12.04246 -12.00886 -11.70166 -11.49340 -11.24727 -11.15444 -11.09786 -10.57285 -10.04573 -9.79587 -8.95278 -8.61801 -7.82920 -5.32195 -0.53496 -0.01117 1.30849 1.46942 1.51674 1.52506 1.58683 1.96719 1.99220 2.46745 2.53110 3.15558 3.25244 3.35259 3.46972 3.51066 3.61567 3.81874 3.84786 3.93458 4.11111 4.17439 4.31283 4.38113 4.40190 4.46912 4.57740 4.61315 4.77720 4.84503 4.86581 4.92777 4.98939 5.04740 5.11630 5.14850 5.24470 5.32086 5.39719 5.58892 5.60535 5.60619 5.69210 5.88223 6.37082 6.57261 6.76823 6.97597 7.11327 7.80525 8.37855 9.23445 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024845 B = 0.003278 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.732251 B = 8538.524167 C = 8873.592664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.052 4.052 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.304 1.304 6 H -0.274 1.274 7 C -0.248 4.248 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.129 3.871 11 C 0.097 3.903 12 H 0.139 0.861 13 C -0.105 4.105 14 C -0.105 4.105 15 C 0.111 3.889 16 H 0.082 0.918 17 C 0.187 3.813 18 N -0.596 5.596 19 C 0.581 3.419 20 O -0.586 6.586 21 C -0.154 4.154 22 C -0.097 4.097 23 C -0.077 4.077 24 C 0.206 3.794 25 N -0.521 5.521 26 C 0.022 3.978 27 C -0.091 4.091 28 N -0.372 5.372 29 C 0.130 3.870 30 H 0.247 0.753 31 H 0.087 0.913 32 H 0.010 0.990 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.076 0.924 37 H -0.018 1.018 38 H 0.064 0.936 39 H 0.170 0.830 40 H 0.179 0.821 41 H 0.213 0.787 42 H 0.220 0.780 43 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.391 -19.318 2.954 20.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.247 4.247 3 Si 0.796 3.204 4 H -0.202 1.202 5 H -0.231 1.231 6 H -0.200 1.200 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.325 5.325 10 C 0.003 3.997 11 C -0.006 4.006 12 H 0.156 0.844 13 C -0.144 4.144 14 C -0.143 4.143 15 C 0.007 3.993 16 H 0.100 0.900 17 C 0.061 3.939 18 N -0.326 5.326 19 C 0.371 3.629 20 O -0.468 6.468 21 C -0.160 4.160 22 C -0.121 4.121 23 C -0.097 4.097 24 C -0.037 4.037 25 N -0.241 5.241 26 C -0.127 4.127 27 C -0.220 4.220 28 N -0.044 5.044 29 C 0.005 3.995 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.027 0.973 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.001 0.999 38 H 0.082 0.918 39 H 0.187 0.813 40 H 0.196 0.804 41 H 0.230 0.770 42 H 0.236 0.764 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.185 -19.490 2.564 20.098 hybrid contribution -1.039 1.677 0.356 2.004 sum 3.147 -17.813 2.919 18.323 Atomic orbital electron populations 1.70153 1.06829 1.25650 1.56397 1.25866 0.95963 1.01503 1.01368 0.85347 0.77329 0.79330 0.78425 1.20229 1.23094 1.19951 1.19507 0.91373 0.84337 1.42604 0.90205 1.44676 1.27686 1.03665 1.56436 1.21715 0.98998 0.86206 0.92795 1.23545 0.80381 1.00232 0.96433 0.84364 1.22261 0.97301 0.99861 0.94938 1.22239 0.92825 1.01412 0.97851 1.23019 0.99317 0.83865 0.93131 0.89986 1.21274 0.86861 0.94992 0.90768 1.49078 1.14379 1.19686 1.49449 1.17653 0.83685 0.82057 0.79543 1.90761 1.20375 1.80830 1.54877 1.19149 1.01321 0.92868 1.02649 1.21791 0.95249 1.00643 0.94375 1.20458 1.00908 0.87108 1.01196 1.21520 0.92749 0.96307 0.93170 1.70741 1.26192 0.99347 1.27818 1.23178 0.93001 1.01358 0.95188 1.23476 1.07930 0.81167 1.09408 1.42976 1.25244 1.08963 1.27210 1.21662 0.98410 0.83791 0.95649 0.94408 0.89498 0.97265 0.90017 0.89425 0.91423 0.90497 0.99939 0.91815 0.81323 0.80371 0.76992 0.76373 0.79620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.73 11.00 21.65 0.24 -54.49 16 2 C -0.05 -2.76 5.09 84.86 0.43 -2.33 16 3 Si 0.97 42.91 29.57 68.60 2.03 44.94 16 4 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.25 -12.34 9.65 84.03 0.81 -11.53 16 8 H 0.08 3.72 7.85 -2.91 -0.02 3.70 16 9 N -0.60 -27.24 2.31 -689.72 -1.59 -28.83 16 10 C 0.13 4.52 5.47 86.55 0.47 5.00 16 11 C 0.10 2.69 2.97 45.33 0.13 2.82 16 12 H 0.14 2.89 4.84 -2.39 -0.01 2.88 16 13 C -0.11 -2.74 6.16 31.41 0.19 -2.55 16 14 C -0.10 -3.24 6.19 31.56 0.20 -3.04 16 15 C 0.11 4.15 4.06 45.47 0.18 4.33 16 16 H 0.08 3.15 7.96 -2.38 -0.02 3.13 16 17 C 0.19 8.87 4.69 86.15 0.40 9.27 16 18 N -0.60 -19.89 2.74 -760.87 -2.08 -21.97 16 19 C 0.58 19.74 7.70 86.71 0.67 20.41 16 20 O -0.59 -23.87 16.90 -4.01 -0.07 -23.94 16 21 C -0.15 -4.09 5.74 -20.35 -0.12 -4.21 16 22 C -0.10 -2.22 8.00 22.54 0.18 -2.04 16 23 C -0.08 -1.64 10.09 22.39 0.23 -1.41 16 24 C 0.21 5.06 7.81 134.16 1.05 6.11 16 25 N -0.52 -13.04 11.31 -194.14 -2.20 -15.24 16 26 C 0.02 0.40 11.82 83.68 0.99 1.39 16 27 C -0.09 -1.53 11.75 83.14 0.98 -0.56 16 28 N -0.37 -8.27 2.93 -351.03 -1.03 -9.30 16 29 C 0.13 3.04 10.48 83.66 0.88 3.91 16 30 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 31 H 0.09 2.71 7.97 -2.39 -0.02 2.69 16 32 H 0.01 0.36 7.62 -2.39 -0.02 0.34 16 33 H 0.08 2.23 7.83 -2.39 -0.02 2.21 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 2.39 7.86 -2.39 -0.02 2.37 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 38 H 0.06 3.39 6.40 -2.39 -0.02 3.37 16 39 H 0.17 3.66 3.83 -2.91 -0.01 3.65 16 40 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 41 H 0.21 2.20 8.06 -2.91 -0.02 2.18 16 42 H 0.22 1.88 8.06 -2.91 -0.02 1.86 16 43 H 0.19 3.80 7.78 -2.91 -0.02 3.77 16 Total: -1.00 -71.55 342.57 4.02 -67.53 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 1.04 Total: 15.73 kcal Atomic # 6 Polarization: 17.90 SS G_CDS: 7.68 Total: 25.57 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -6.66 Total: -129.83 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.07 Total: -23.94 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -71.55 4.02 -67.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018157226.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.023 kcal (2) G-P(sol) polarization free energy of solvation -71.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds