Wall clock time and date at job start Tue Mar 31 2020 15:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00141 * 2 1 4 4 H 1.48502 * 109.47394 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47444 * 300.00159 * 3 2 1 6 6 H 1.48500 * 109.46959 * 60.00306 * 3 2 1 7 7 C 1.38810 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00451 * 163.11627 * 7 2 1 9 9 N 1.36938 * 119.99721 * 343.11776 * 7 2 1 10 10 C 1.47171 * 120.71008 * 154.76787 * 9 7 2 11 11 C 1.53892 * 108.02522 * 132.75446 * 10 9 7 12 12 H 1.09001 * 112.08942 * 181.91544 * 11 10 9 13 13 C 1.54791 * 107.88372 * 306.47789 * 11 10 9 14 14 C 1.54281 * 104.72721 * 89.01971 * 13 11 10 15 15 C 1.54544 * 104.94461 * 0.07543 * 14 13 11 16 16 H 1.08997 * 112.17804 * 146.36139 * 15 14 13 17 17 C 1.48367 * 120.34639 * 334.60911 * 9 7 2 18 18 N 1.48303 * 107.20862 * 58.36632 * 11 10 9 19 19 C 1.34779 * 128.07978 * 106.68197 * 18 11 10 20 20 O 1.21609 * 119.99837 * 180.02562 * 19 18 11 21 21 C 1.47388 * 119.99753 * 0.02562 * 19 18 11 22 22 N 1.31571 * 126.82220 * 0.02725 * 21 19 18 23 23 N 1.28391 * 111.96519 * 179.97438 * 22 21 19 24 24 H 0.96999 * 124.37131 * 180.02562 * 23 22 21 25 25 C 1.37046 * 111.25212 * 0.02562 * 23 22 21 26 26 C 1.39132 * 134.72164 * 179.97438 * 25 23 22 27 27 C 1.36682 * 119.78131 * 179.97438 * 26 25 23 28 28 C 1.38899 * 120.89559 * 359.97438 * 27 26 25 29 29 C 1.36717 * 120.52420 * 0.02562 * 28 27 26 30 30 C 1.39195 * 119.50726 * 359.74755 * 29 28 27 31 31 H 0.97000 * 119.99522 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.74787 * 13.12222 * 10 9 7 33 33 H 1.08998 * 109.78791 * 252.40928 * 10 9 7 34 34 H 1.08998 * 110.40535 * 330.22791 * 13 11 10 35 35 H 1.08997 * 110.44767 * 207.83062 * 13 11 10 36 36 H 1.09000 * 110.36688 * 241.17647 * 14 13 11 37 37 H 1.08999 * 110.36443 * 118.97960 * 14 13 11 38 38 H 1.09000 * 109.49611 * 107.72268 * 17 9 7 39 39 H 1.09000 * 110.61277 * 346.60667 * 17 9 7 40 40 H 1.07995 * 120.10595 * 0.02562 * 26 25 23 41 41 H 1.08000 * 119.54781 * 180.02562 * 27 26 25 42 42 H 1.08000 * 119.73353 * 180.02562 * 28 27 26 43 43 H 1.07998 * 120.24304 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2222 -0.2722 9 7 1.3698 -2.3626 0.3434 10 6 1.8525 -3.6622 -0.1505 11 6 1.9073 -4.6341 1.0414 12 1 2.2902 -5.6135 0.7545 13 6 2.7483 -3.9696 2.1582 14 6 1.7294 -3.1614 2.9882 15 6 0.3679 -3.4113 2.3010 16 1 -0.4558 -3.4301 3.0146 17 6 0.1772 -2.3276 1.2252 18 7 0.5389 -4.7113 1.6079 19 6 -0.3434 -5.7258 1.5144 20 8 -1.4360 -5.6317 2.0402 21 6 0.0158 -6.9491 0.7750 22 7 1.1526 -7.1931 0.1592 23 7 1.1601 -8.3516 -0.3941 24 1 1.9074 -8.7146 -0.8947 25 6 -0.0242 -9.0091 -0.1860 26 6 -0.5320 -10.2513 -0.5532 27 6 -1.7936 -10.6098 -0.1683 28 6 -2.5801 -9.7498 0.5875 29 6 -2.1057 -8.5234 0.9618 30 6 -0.8217 -8.1406 0.5844 31 1 -0.4849 0.8401 0.0004 32 1 2.8485 -3.5469 -0.5779 33 1 1.1690 -4.0462 -0.9078 34 1 3.4971 -3.3058 1.7261 35 1 3.2255 -4.7285 2.7782 36 1 1.9773 -2.1002 2.9643 37 1 1.7071 -3.5217 4.0167 38 1 -0.7156 -2.5442 0.6385 39 1 0.0791 -1.3511 1.6994 40 1 0.0690 -10.9304 -1.1396 41 1 -2.1838 -11.5751 -0.4551 42 1 -3.5742 -10.0524 0.8817 43 1 -2.7210 -7.8585 1.5498 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018230658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:51 Heat of formation + Delta-G solvation = 102.304010 kcal Electronic energy + Delta-G solvation = -28167.908886 eV Core-core repulsion = 24408.689058 eV Total energy + Delta-G solvation = -3759.219829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.50017 -39.89620 -37.83996 -37.56490 -34.01880 -32.66345 -31.22917 -31.05232 -30.29899 -30.23125 -29.60580 -26.27641 -24.37939 -23.60404 -23.33368 -22.50129 -22.35466 -20.47023 -19.90538 -18.51055 -17.82349 -17.70998 -16.61080 -15.99861 -15.76198 -15.35778 -15.19728 -14.97488 -14.44668 -14.20376 -14.11837 -13.88168 -13.36104 -13.01155 -12.77007 -12.73229 -12.30992 -12.19309 -12.04353 -11.86573 -11.48058 -11.31157 -11.12058 -10.96922 -10.82025 -10.45427 -10.38266 -10.23972 -10.19125 -9.93519 -9.77694 -9.63764 -9.55443 -8.89278 -8.52778 -8.29593 -8.06840 -6.67950 -5.77940 -3.19106 0.76288 1.25637 1.95121 2.60667 3.31222 3.36968 3.44934 3.46594 3.47109 3.80600 4.30582 4.41127 4.48707 4.66777 4.84068 5.00086 5.17122 5.26098 5.30499 5.39054 5.46004 5.48341 5.55313 5.64872 5.84071 5.86948 5.94042 6.06614 6.20731 6.24396 6.34387 6.39440 6.45268 6.46300 6.50458 6.64071 6.67329 6.71441 6.85852 6.92900 7.04069 7.32541 7.58049 7.74885 7.77855 8.11190 8.37234 8.57041 9.16471 9.80822 10.38235 11.30443 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023887 B = 0.003339 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.896264 B = 8383.537270 C = 8546.507242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.068 0.932 9 N -0.591 5.591 10 C 0.143 3.857 11 C 0.102 3.898 12 H 0.109 0.891 13 C -0.111 4.111 14 C -0.113 4.113 15 C 0.106 3.894 16 H 0.089 0.911 17 C 0.175 3.825 18 N -0.589 5.589 19 C 0.615 3.385 20 O -0.545 6.545 21 C 0.024 3.976 22 N -0.204 5.204 23 N -0.421 5.421 24 H 0.445 0.555 25 C 0.065 3.935 26 C -0.124 4.124 27 C -0.085 4.085 28 C -0.146 4.146 29 C -0.038 4.038 30 C -0.111 4.111 31 H 0.254 0.746 32 H 0.062 0.938 33 H 0.017 0.983 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.026 0.974 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.652 -20.160 1.472 20.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.086 0.914 9 N -0.315 5.315 10 C 0.016 3.984 11 C -0.003 4.003 12 H 0.126 0.874 13 C -0.150 4.150 14 C -0.151 4.151 15 C 0.002 3.998 16 H 0.107 0.893 17 C 0.049 3.951 18 N -0.321 5.321 19 C 0.401 3.599 20 O -0.421 6.421 21 C -0.148 4.148 22 N -0.033 5.033 23 N -0.139 5.139 24 H 0.290 0.710 25 C -0.048 4.048 26 C -0.145 4.145 27 C -0.105 4.105 28 C -0.165 4.165 29 C -0.059 4.059 30 C -0.118 4.118 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.112 0.888 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.940 -19.529 1.501 19.682 hybrid contribution 0.137 0.316 -0.396 0.525 sum 2.077 -19.213 1.105 19.356 Atomic orbital electron populations 1.70045 1.05195 1.25402 1.54177 1.25004 0.95268 0.98293 1.01156 0.86243 0.79257 0.84116 0.77259 1.20318 1.21882 1.21580 1.19212 0.92553 0.84561 1.41569 0.91411 1.44399 1.32293 1.00875 1.53938 1.21385 0.98011 0.86691 0.92343 1.23358 0.81128 1.00249 0.95534 0.87379 1.22343 0.97885 0.98399 0.96330 1.22329 0.94166 1.01770 0.96835 1.23281 0.97695 0.82818 0.95970 0.89284 1.21499 0.88730 0.95732 0.89121 1.49006 1.15623 1.15539 1.51942 1.16174 0.83712 0.80153 0.79866 1.90761 1.21692 1.80730 1.48937 1.22894 0.91031 0.96471 1.04358 1.73007 1.22290 1.00204 1.07759 1.43133 1.14280 1.11388 1.45119 0.71010 1.19215 0.88215 0.96083 1.01331 1.19744 0.97004 0.93510 1.04250 1.20717 0.93175 0.99598 0.97053 1.20827 1.00623 0.94282 1.00794 1.20453 0.92839 0.95872 0.96703 1.19445 0.96201 0.93324 1.02817 0.93623 0.92001 0.96511 0.89967 0.93006 0.89468 0.93090 0.95597 0.88778 0.85580 0.85300 0.85348 0.84308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.97 11.11 55.49 0.62 -25.36 16 2 C 0.00 0.03 4.95 -17.43 -0.09 -0.05 16 3 Si 0.90 21.25 29.59 -169.99 -5.03 16.23 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -6.56 9.65 -15.06 -0.15 -6.70 16 8 H 0.07 1.74 7.87 -52.49 -0.41 1.33 16 9 N -0.59 -14.34 2.31 -170.09 -0.39 -14.74 16 10 C 0.14 2.97 6.03 -3.21 -0.02 2.95 16 11 C 0.10 1.82 3.82 -65.53 -0.25 1.57 16 12 H 0.11 1.75 5.50 -51.93 -0.29 1.46 16 13 C -0.11 -1.85 6.20 -25.12 -0.16 -2.00 16 14 C -0.11 -2.00 6.17 -25.25 -0.16 -2.16 16 15 C 0.11 2.14 4.07 -65.66 -0.27 1.87 16 16 H 0.09 1.78 7.93 -51.93 -0.41 1.37 16 17 C 0.18 4.22 4.63 -2.55 -0.01 4.21 16 18 N -0.59 -11.51 2.75 -154.15 -0.42 -11.93 16 19 C 0.61 12.23 7.92 -12.53 -0.10 12.13 16 20 O -0.54 -11.93 16.71 5.27 0.09 -11.84 16 21 C 0.02 0.41 7.20 -80.76 -0.58 -0.17 16 22 N -0.20 -3.01 9.20 34.46 0.32 -2.69 16 23 N -0.42 -4.75 6.85 32.34 0.22 -4.53 16 24 H 0.45 3.18 8.96 -190.49 -1.71 1.47 16 25 C 0.06 0.78 7.38 -84.21 -0.62 0.16 16 26 C -0.12 -1.14 10.03 -39.81 -0.40 -1.54 16 27 C -0.08 -0.74 9.96 -39.90 -0.40 -1.13 16 28 C -0.15 -1.48 9.98 -39.89 -0.40 -1.88 16 29 C -0.04 -0.52 9.87 -39.78 -0.39 -0.91 16 30 C -0.11 -1.67 6.34 -105.05 -0.67 -2.33 16 31 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.06 1.21 7.96 -51.93 -0.41 0.80 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 1.41 7.85 -51.93 -0.41 1.00 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.67 7.83 -51.93 -0.41 1.26 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 2.45 6.34 -51.93 -0.33 2.13 16 40 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.14 1.94 7.65 -52.49 -0.40 1.54 16 LS Contribution 346.98 15.07 5.23 5.23 Total: -1.00 -32.53 346.98 -10.89 -43.42 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.87 Total: 2.19 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -4.65 Total: 4.02 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 0.34 Total: -59.25 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.53 -10.89 -43.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018230658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.723 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds