Wall clock time and date at job start Tue Mar 31 2020 15:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00141 * 2 1 4 4 H 1.48502 * 109.47394 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47444 * 300.00159 * 3 2 1 6 6 H 1.48500 * 109.46959 * 60.00306 * 3 2 1 7 7 C 1.38810 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00451 * 163.11627 * 7 2 1 9 9 N 1.36938 * 119.99721 * 343.11776 * 7 2 1 10 10 C 1.47171 * 120.71008 * 154.76787 * 9 7 2 11 11 C 1.53892 * 108.02522 * 132.75446 * 10 9 7 12 12 H 1.09001 * 112.08942 * 181.91544 * 11 10 9 13 13 C 1.54791 * 107.88372 * 306.47789 * 11 10 9 14 14 C 1.54281 * 104.72721 * 89.01971 * 13 11 10 15 15 C 1.54544 * 104.94461 * 0.07543 * 14 13 11 16 16 H 1.08997 * 112.17804 * 146.36139 * 15 14 13 17 17 C 1.48367 * 120.34639 * 334.60911 * 9 7 2 18 18 N 1.48303 * 107.20862 * 58.36632 * 11 10 9 19 19 C 1.34779 * 128.07978 * 106.68197 * 18 11 10 20 20 O 1.21609 * 119.99837 * 180.02562 * 19 18 11 21 21 C 1.47388 * 119.99753 * 0.02562 * 19 18 11 22 22 N 1.31571 * 126.82220 * 0.02725 * 21 19 18 23 23 N 1.28391 * 111.96519 * 179.97438 * 22 21 19 24 24 H 0.96999 * 124.37131 * 180.02562 * 23 22 21 25 25 C 1.37046 * 111.25212 * 0.02562 * 23 22 21 26 26 C 1.39132 * 134.72164 * 179.97438 * 25 23 22 27 27 C 1.36682 * 119.78131 * 179.97438 * 26 25 23 28 28 C 1.38899 * 120.89559 * 359.97438 * 27 26 25 29 29 C 1.36717 * 120.52420 * 0.02562 * 28 27 26 30 30 C 1.39195 * 119.50726 * 359.74755 * 29 28 27 31 31 H 0.97000 * 119.99522 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.74787 * 13.12222 * 10 9 7 33 33 H 1.08998 * 109.78791 * 252.40928 * 10 9 7 34 34 H 1.08998 * 110.40535 * 330.22791 * 13 11 10 35 35 H 1.08997 * 110.44767 * 207.83062 * 13 11 10 36 36 H 1.09000 * 110.36688 * 241.17647 * 14 13 11 37 37 H 1.08999 * 110.36443 * 118.97960 * 14 13 11 38 38 H 1.09000 * 109.49611 * 107.72268 * 17 9 7 39 39 H 1.09000 * 110.61277 * 346.60667 * 17 9 7 40 40 H 1.07995 * 120.10595 * 0.02562 * 26 25 23 41 41 H 1.08000 * 119.54781 * 180.02562 * 27 26 25 42 42 H 1.08000 * 119.73353 * 180.02562 * 28 27 26 43 43 H 1.07998 * 120.24304 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2222 -0.2722 9 7 1.3698 -2.3626 0.3434 10 6 1.8525 -3.6622 -0.1505 11 6 1.9073 -4.6341 1.0414 12 1 2.2902 -5.6135 0.7545 13 6 2.7483 -3.9696 2.1582 14 6 1.7294 -3.1614 2.9882 15 6 0.3679 -3.4113 2.3010 16 1 -0.4558 -3.4301 3.0146 17 6 0.1772 -2.3276 1.2252 18 7 0.5389 -4.7113 1.6079 19 6 -0.3434 -5.7258 1.5144 20 8 -1.4360 -5.6317 2.0402 21 6 0.0158 -6.9491 0.7750 22 7 1.1526 -7.1931 0.1592 23 7 1.1601 -8.3516 -0.3941 24 1 1.9074 -8.7146 -0.8947 25 6 -0.0242 -9.0091 -0.1860 26 6 -0.5320 -10.2513 -0.5532 27 6 -1.7936 -10.6098 -0.1683 28 6 -2.5801 -9.7498 0.5875 29 6 -2.1057 -8.5234 0.9618 30 6 -0.8217 -8.1406 0.5844 31 1 -0.4849 0.8401 0.0004 32 1 2.8485 -3.5469 -0.5779 33 1 1.1690 -4.0462 -0.9078 34 1 3.4971 -3.3058 1.7261 35 1 3.2255 -4.7285 2.7782 36 1 1.9773 -2.1002 2.9643 37 1 1.7071 -3.5217 4.0167 38 1 -0.7156 -2.5442 0.6385 39 1 0.0791 -1.3511 1.6994 40 1 0.0690 -10.9304 -1.1396 41 1 -2.1838 -11.5751 -0.4551 42 1 -3.5742 -10.0524 0.8817 43 1 -2.7210 -7.8585 1.5498 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018230658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:50 Heat of formation + Delta-G solvation = 82.133117 kcal Electronic energy + Delta-G solvation = -28168.783562 eV Core-core repulsion = 24408.689058 eV Total energy + Delta-G solvation = -3760.094504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.51949 -41.47184 -39.17023 -38.69647 -35.91707 -33.79318 -33.02256 -32.46396 -31.96001 -31.21798 -30.63454 -28.13617 -25.84264 -25.27856 -24.38749 -24.01413 -23.32046 -22.01544 -21.36943 -19.87376 -19.16192 -18.94200 -18.07750 -17.37479 -16.93849 -16.78136 -16.62224 -16.28306 -16.11184 -15.63124 -15.28108 -15.05599 -14.89063 -14.74966 -14.34108 -14.28630 -13.74204 -13.53976 -13.20711 -13.16218 -12.89443 -12.87567 -12.72676 -12.37835 -12.23763 -12.13073 -12.04400 -11.93886 -11.67617 -11.46259 -11.21406 -11.17564 -11.11863 -10.59813 -9.87136 -9.78777 -9.09488 -8.68579 -7.84610 -5.29810 -0.23375 0.36742 0.84560 1.48572 1.50641 1.60730 1.61581 1.97508 2.20091 2.52586 2.81252 3.12417 3.30682 3.47598 3.48797 3.62930 3.83421 3.95259 4.10692 4.13380 4.16877 4.25231 4.39754 4.42236 4.47644 4.56324 4.70583 4.80120 4.85025 4.89312 5.00924 5.05583 5.08777 5.11443 5.22036 5.23628 5.36839 5.47361 5.53590 5.57785 5.59936 5.67635 5.85037 6.12772 6.32979 6.56312 6.71286 7.06308 7.09390 7.79472 8.35400 9.22398 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023887 B = 0.003339 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.896264 B = 8383.537270 C = 8546.507242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.055 4.055 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.300 1.300 6 H -0.292 1.292 7 C -0.250 4.250 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.141 3.859 11 C 0.114 3.886 12 H 0.132 0.868 13 C -0.103 4.103 14 C -0.104 4.104 15 C 0.108 3.892 16 H 0.084 0.916 17 C 0.190 3.810 18 N -0.595 5.595 19 C 0.609 3.391 20 O -0.580 6.580 21 C -0.022 4.022 22 N -0.200 5.200 23 N -0.394 5.394 24 H 0.465 0.535 25 C 0.058 3.942 26 C -0.109 4.109 27 C -0.081 4.081 28 C -0.129 4.129 29 C -0.079 4.079 30 C -0.139 4.139 31 H 0.248 0.752 32 H 0.079 0.921 33 H -0.007 1.007 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.077 0.923 38 H -0.024 1.024 39 H 0.068 0.932 40 H 0.169 0.831 41 H 0.173 0.827 42 H 0.153 0.847 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.038 -23.796 0.873 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.250 4.250 3 Si 0.798 3.202 4 H -0.184 1.184 5 H -0.227 1.227 6 H -0.219 1.219 7 C -0.380 4.380 8 H 0.097 0.903 9 N -0.325 5.325 10 C 0.015 3.985 11 C 0.010 3.990 12 H 0.149 0.851 13 C -0.142 4.142 14 C -0.143 4.143 15 C 0.004 3.996 16 H 0.102 0.898 17 C 0.064 3.936 18 N -0.326 5.326 19 C 0.397 3.603 20 O -0.459 6.459 21 C -0.191 4.191 22 N -0.032 5.032 23 N -0.117 5.117 24 H 0.314 0.686 25 C -0.055 4.055 26 C -0.130 4.130 27 C -0.101 4.101 28 C -0.148 4.148 29 C -0.100 4.100 30 C -0.146 4.146 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.011 0.989 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.096 0.904 38 H -0.006 1.006 39 H 0.086 0.914 40 H 0.186 0.814 41 H 0.190 0.810 42 H 0.171 0.829 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.372 -23.203 0.892 23.628 hybrid contribution -0.685 1.244 -0.339 1.460 sum 3.687 -21.959 0.554 22.274 Atomic orbital electron populations 1.70235 1.06939 1.25651 1.56210 1.25797 0.95898 1.01592 1.01668 0.85177 0.78873 0.79812 0.76386 1.18384 1.22724 1.21919 1.19610 0.93049 0.85236 1.40083 0.90284 1.44597 1.31876 1.01854 1.54184 1.21535 0.97930 0.85769 0.93301 1.23330 0.80613 1.00483 0.94592 0.85087 1.22347 0.97132 0.98844 0.95848 1.22253 0.92505 1.01223 0.98277 1.23036 0.99476 0.82349 0.94728 0.89829 1.21123 0.87158 0.95874 0.89456 1.49076 1.16367 1.15066 1.52132 1.16676 0.83113 0.81040 0.79460 1.90715 1.23035 1.81709 1.50419 1.22436 0.93088 0.96506 1.07052 1.72798 1.21502 1.01577 1.07282 1.43165 1.14814 1.10125 1.43550 0.68572 1.19476 0.87785 0.96846 1.01410 1.20301 0.97376 0.92351 1.02948 1.21243 0.92641 1.00732 0.95472 1.21209 1.01737 0.92753 0.99131 1.20459 0.92902 0.97586 0.99012 1.19686 0.97278 0.93362 1.04262 0.94318 0.90231 0.98941 0.90046 0.89672 0.91058 0.90402 1.00586 0.91350 0.81374 0.81003 0.82894 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.05 11.11 21.65 0.24 -56.81 16 2 C -0.05 -3.05 4.95 84.86 0.42 -2.63 16 3 Si 0.97 44.54 29.59 68.60 2.03 46.57 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.25 -13.31 9.65 84.03 0.81 -12.50 16 8 H 0.08 3.99 7.87 -2.91 -0.02 3.96 16 9 N -0.60 -30.12 2.31 -692.04 -1.60 -31.72 16 10 C 0.14 5.92 6.03 86.55 0.52 6.44 16 11 C 0.11 3.98 3.82 45.56 0.17 4.15 16 12 H 0.13 4.01 5.50 -2.39 -0.01 4.00 16 13 C -0.10 -3.23 6.20 31.64 0.20 -3.03 16 14 C -0.10 -3.65 6.17 31.55 0.19 -3.46 16 15 C 0.11 4.58 4.07 45.47 0.19 4.77 16 16 H 0.08 3.58 7.93 -2.39 -0.02 3.56 16 17 C 0.19 9.82 4.63 86.32 0.40 10.22 16 18 N -0.60 -24.02 2.75 -759.85 -2.09 -26.12 16 19 C 0.61 25.56 7.92 86.65 0.69 26.25 16 20 O -0.58 -27.45 16.71 -4.06 -0.07 -27.52 16 21 C -0.02 -0.77 7.20 43.86 0.32 -0.45 16 22 N -0.20 -5.70 9.20 -44.88 -0.41 -6.12 16 23 N -0.39 -7.92 6.85 -51.60 -0.35 -8.27 16 24 H 0.46 4.96 8.96 -220.03 -1.97 2.99 16 25 C 0.06 1.26 7.38 39.18 0.29 1.55 16 26 C -0.11 -1.49 10.03 22.12 0.22 -1.27 16 27 C -0.08 -1.02 9.96 22.06 0.22 -0.80 16 28 C -0.13 -2.34 9.98 22.07 0.22 -2.12 16 29 C -0.08 -2.18 9.87 22.14 0.22 -1.96 16 30 C -0.14 -4.20 6.34 -20.14 -0.13 -4.33 16 31 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 32 H 0.08 3.03 7.96 -2.39 -0.02 3.01 16 33 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 34 H 0.08 2.60 7.85 -2.39 -0.02 2.58 16 35 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.07 2.74 7.83 -2.39 -0.02 2.72 16 37 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 38 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 39 H 0.07 3.85 6.34 -2.39 -0.02 3.83 16 40 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 41 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 42 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 43 H 0.11 3.56 7.65 -2.91 -0.02 3.54 16 Total: -1.00 -77.23 346.98 1.77 -75.46 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -0.92 Total: 13.69 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: 4.95 Total: 20.84 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -4.22 Total: -129.03 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.07 Total: -27.52 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -77.23 1.77 -75.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018230658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.591 kcal (2) G-P(sol) polarization free energy of solvation -77.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds