Wall clock time and date at job start Tue Mar 31 2020 14:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 119.99744 * 2 1 4 4 H 1.48504 * 109.47257 * 269.99675 * 3 2 1 5 5 H 1.48499 * 109.47587 * 30.00317 * 3 2 1 6 6 H 1.48505 * 109.46974 * 150.00096 * 3 2 1 7 7 C 1.38815 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99722 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00128 * 0.02562 * 7 2 1 10 10 C 1.47424 * 125.64955 * 14.72508 * 9 7 2 11 11 C 1.54911 * 104.83482 * 155.89750 * 10 9 7 12 12 C 1.55156 * 101.57833 * 37.01008 * 11 10 9 13 13 C 1.47018 * 125.64954 * 194.75743 * 9 7 2 14 14 H 1.08998 * 110.01216 * 300.52859 * 13 9 7 15 15 C 1.53005 * 109.88158 * 61.61452 * 13 9 7 16 16 N 1.46504 * 109.46960 * 182.40038 * 15 13 9 17 17 C 1.34781 * 119.99687 * 185.13566 * 16 15 13 18 18 O 1.21547 * 119.99907 * 359.97438 * 17 16 15 19 19 C 1.47895 * 119.99919 * 179.97438 * 17 16 15 20 20 N 1.32136 * 120.03094 * 359.97438 * 19 17 16 21 21 C 1.31987 * 122.76861 * 180.02562 * 20 19 17 22 22 C 1.37773 * 121.72612 * 0.02562 * 21 20 19 23 23 C 1.40383 * 118.72895 * 359.97438 * 22 21 20 24 24 C 1.40647 * 122.27826 * 179.97438 * 23 22 21 25 25 C 1.36638 * 117.95766 * 180.02562 * 24 23 22 26 26 C 1.39399 * 119.91776 * 0.02562 * 25 24 23 27 27 N 1.31202 * 121.85840 * 0.02562 * 26 25 24 28 28 C 1.33252 * 121.22167 * 359.97438 * 27 26 25 29 29 H 0.97000 * 120.00028 * 359.97438 * 1 2 3 30 30 H 1.09003 * 110.36609 * 37.05765 * 10 9 7 31 31 H 1.09001 * 110.46201 * 274.78334 * 10 9 7 32 32 H 1.09001 * 111.00111 * 278.94368 * 11 10 9 33 33 H 1.08996 * 111.00896 * 155.08475 * 11 10 9 34 34 H 1.09000 * 110.71998 * 206.13432 * 12 11 10 35 35 H 1.08997 * 110.71904 * 82.86465 * 12 11 10 36 36 H 1.09000 * 109.47251 * 62.40048 * 15 13 9 37 37 H 1.08998 * 109.47460 * 302.40027 * 15 13 9 38 38 H 0.96998 * 119.99922 * 5.12791 * 16 15 13 39 39 H 1.07999 * 119.13242 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.63382 * 179.97438 * 22 21 20 41 41 H 1.08005 * 121.01961 * 0.02562 * 24 23 22 42 42 H 1.07998 * 120.04558 * 179.97438 * 25 24 23 43 43 H 1.08009 * 119.07165 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1072 -2.5530 -0.3045 11 6 -0.2460 -4.0224 -0.7751 12 6 0.7641 -4.7441 0.1556 13 6 1.8976 -3.7077 0.3054 14 1 2.7030 -3.9355 -0.3929 15 6 2.4321 -3.7246 1.7389 16 7 3.0509 -5.0237 2.0141 17 6 3.5007 -5.3070 3.2526 18 8 3.3935 -4.4845 4.1411 19 6 4.1249 -6.6187 3.5306 20 7 4.2413 -7.5135 2.5653 21 6 4.7883 -8.6999 2.7532 22 6 5.2778 -9.0856 3.9819 23 6 5.1888 -8.1864 5.0563 24 6 5.6639 -8.5027 6.3418 25 6 5.5317 -7.5612 7.3231 26 6 4.9399 -6.3328 7.0330 27 7 4.4976 -6.0437 5.8321 28 6 4.5960 -6.9174 4.8308 29 1 -0.4850 0.8400 0.0004 30 1 -0.4069 -1.8701 -1.0995 31 1 -0.7090 -2.3821 0.5882 32 1 0.0430 -4.1266 -1.8209 33 1 -1.2589 -4.3907 -0.6127 34 1 1.1349 -5.6564 -0.3116 35 1 0.3102 -4.9617 1.1224 36 1 1.6100 -3.5589 2.4352 37 1 3.1746 -2.9357 1.8593 38 1 3.1366 -5.6800 1.3050 39 1 4.8530 -9.3866 1.9221 40 1 5.7216 -10.0611 4.1159 41 1 6.1192 -9.4603 6.5468 42 1 5.8845 -7.7686 8.3225 43 1 4.8420 -5.5987 7.8192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027938573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:31 Heat of formation + Delta-G solvation = 66.218719 kcal Electronic energy + Delta-G solvation = -26777.438068 eV Core-core repulsion = 23016.653464 eV Total energy + Delta-G solvation = -3760.784604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.53488 -39.19649 -38.17740 -37.46076 -34.13851 -33.97012 -32.42403 -31.78456 -30.88723 -29.54957 -28.54418 -25.83059 -24.82520 -24.38915 -24.08965 -22.88934 -20.62640 -20.09891 -19.52463 -18.88057 -17.84549 -17.78214 -16.75468 -16.25750 -15.71769 -15.46311 -15.10389 -14.69531 -14.58897 -14.45438 -14.32611 -13.89061 -13.71595 -13.44203 -13.10613 -13.02730 -12.71355 -12.52193 -12.01841 -11.81849 -11.66279 -11.24338 -11.06298 -10.89334 -10.73326 -10.25086 -10.15745 -10.10281 -10.02722 -9.83475 -9.75184 -9.66949 -9.65236 -9.24435 -8.78286 -8.55523 -8.43468 -6.77993 -5.71485 -3.07753 -0.33396 0.37418 1.38440 2.51034 3.22269 3.26019 3.44223 3.49923 3.52066 3.88752 3.93581 4.00546 4.16165 4.29980 4.42761 4.47171 4.55564 4.79623 5.02251 5.09531 5.23346 5.32029 5.41045 5.49376 5.53747 5.59958 5.70061 5.72681 5.89242 5.97219 6.15771 6.21688 6.24807 6.34181 6.53608 6.62510 6.70930 6.79983 6.91185 7.14893 7.35724 7.57302 7.64444 7.67237 7.84621 7.96514 8.31179 8.58508 9.23069 9.83591 10.51419 11.40644 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017546 B = 0.002883 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.416708 B = 9708.285918 C =10732.853964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.232 4.232 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.109 3.891 16 N -0.704 5.704 17 C 0.555 3.445 18 O -0.496 6.496 19 C 0.151 3.849 20 N -0.445 5.445 21 C 0.077 3.923 22 C -0.128 4.128 23 C -0.084 4.084 24 C -0.066 4.066 25 C -0.155 4.155 26 C 0.130 3.870 27 N -0.417 5.417 28 C 0.104 3.896 29 H 0.253 0.747 30 H 0.071 0.929 31 H 0.026 0.974 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.404 0.596 39 H 0.166 0.834 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.411 -22.604 10.209 26.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.199 4.199 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.361 4.361 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.044 3.956 14 H 0.056 0.944 15 C -0.016 4.016 16 N -0.356 5.356 17 C 0.336 3.664 18 O -0.368 6.368 19 C -0.002 4.002 20 N -0.158 5.158 21 C -0.070 4.070 22 C -0.149 4.149 23 C -0.091 4.091 24 C -0.092 4.092 25 C -0.176 4.176 26 C -0.044 4.044 27 N -0.125 5.125 28 C -0.021 4.021 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.239 0.761 39 H 0.184 0.816 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 9.541 -20.774 9.664 24.819 hybrid contribution 1.291 -0.632 0.840 1.665 sum 10.832 -21.407 10.503 26.190 Atomic orbital electron populations 1.69942 1.05012 1.25248 1.56002 1.24914 0.95675 0.97842 1.01472 0.86147 0.78848 0.83448 0.77513 1.21590 1.21618 1.20500 1.18994 0.90415 0.82186 1.44459 0.90634 1.44482 1.06436 1.01040 1.79322 1.21446 0.84810 0.90146 0.98817 1.23006 0.97547 0.99625 0.98543 1.22601 0.97056 0.97027 0.99701 1.21125 0.94582 0.88014 0.91893 0.94392 1.22290 0.97552 0.82427 0.99284 1.46010 1.59832 1.19183 1.10586 1.17610 0.79964 0.85056 0.83729 1.90879 1.54611 1.46741 1.44583 1.21753 0.95881 0.94789 0.87803 1.67394 1.12451 1.02376 1.33556 1.22604 0.94812 0.92719 0.96826 1.22357 0.99675 0.99954 0.92935 1.18980 0.99488 0.95002 0.95661 1.21407 0.96751 0.99928 0.91141 1.22139 0.99717 0.94900 1.00850 1.23371 0.91660 0.95156 0.94236 1.68343 1.13692 1.31193 0.99243 1.19519 0.97727 0.90480 0.94342 0.93651 0.91035 0.95597 0.92323 0.92398 0.92282 0.91857 0.91399 0.91349 0.76127 0.81646 0.83701 0.83782 0.83923 0.81711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.09 10.58 55.49 0.59 -26.50 16 2 C 0.00 -0.05 5.47 -17.43 -0.10 -0.15 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.23 -6.49 9.76 -15.06 -0.15 -6.64 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.59 -14.98 3.13 -162.57 -0.51 -15.49 16 10 C 0.17 4.21 5.41 -2.53 -0.01 4.20 16 11 C -0.15 -2.81 7.09 -24.58 -0.17 -2.99 16 12 C -0.13 -2.22 6.10 -24.90 -0.15 -2.37 16 13 C 0.15 3.15 3.22 -66.95 -0.22 2.93 16 14 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 15 C 0.11 2.25 5.07 -4.04 -0.02 2.23 16 16 N -0.70 -12.19 5.32 -61.23 -0.33 -12.52 16 17 C 0.55 10.19 7.81 -12.30 -0.10 10.10 16 18 O -0.50 -10.81 15.21 5.32 0.08 -10.73 16 19 C 0.15 2.32 6.81 -82.55 -0.56 1.76 16 20 N -0.44 -5.68 9.48 -9.55 -0.09 -5.77 16 21 C 0.08 0.69 11.12 -17.66 -0.20 0.50 16 22 C -0.13 -1.01 9.93 -38.94 -0.39 -1.39 16 23 C -0.08 -0.86 5.75 -106.79 -0.61 -1.48 16 24 C -0.07 -0.48 9.94 -39.25 -0.39 -0.87 16 25 C -0.15 -1.09 10.03 -39.73 -0.40 -1.49 16 26 C 0.13 1.33 11.14 -17.39 -0.19 1.13 16 27 N -0.42 -6.27 8.49 -10.75 -0.09 -6.36 16 28 C 0.10 1.49 6.61 -84.63 -0.56 0.93 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.07 1.93 6.94 -51.93 -0.36 1.57 16 31 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.12 7.81 -51.93 -0.41 0.71 16 36 H 0.07 1.54 8.08 -51.93 -0.42 1.12 16 37 H 0.07 1.57 7.92 -51.93 -0.41 1.15 16 38 H 0.40 6.08 7.68 -40.82 -0.31 5.77 16 39 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 41 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 42 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 43 H 0.17 1.24 8.06 -52.48 -0.42 0.81 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -35.30 359.82 -9.84 -45.14 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.68 Total: 2.92 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -4.22 Total: 6.40 kcal Atomic # 7 Polarization: -66.20 SS G_CDS: -0.43 Total: -66.63 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.30 -9.84 -45.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027938573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.362 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds