Wall clock time and date at job start Tue Mar 31 2020 14:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 119.99744 * 2 1 4 4 H 1.48504 * 109.47257 * 269.99675 * 3 2 1 5 5 H 1.48499 * 109.47587 * 30.00317 * 3 2 1 6 6 H 1.48505 * 109.46974 * 150.00096 * 3 2 1 7 7 C 1.38815 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99722 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00128 * 0.02562 * 7 2 1 10 10 C 1.47424 * 125.64955 * 14.72508 * 9 7 2 11 11 C 1.54911 * 104.83482 * 155.89750 * 10 9 7 12 12 C 1.55156 * 101.57833 * 37.01008 * 11 10 9 13 13 C 1.47018 * 125.64954 * 194.75743 * 9 7 2 14 14 H 1.08998 * 110.01216 * 300.52859 * 13 9 7 15 15 C 1.53005 * 109.88158 * 61.61452 * 13 9 7 16 16 N 1.46504 * 109.46960 * 182.40038 * 15 13 9 17 17 C 1.34781 * 119.99687 * 185.13566 * 16 15 13 18 18 O 1.21547 * 119.99907 * 359.97438 * 17 16 15 19 19 C 1.47895 * 119.99919 * 179.97438 * 17 16 15 20 20 N 1.32136 * 120.03094 * 359.97438 * 19 17 16 21 21 C 1.31987 * 122.76861 * 180.02562 * 20 19 17 22 22 C 1.37773 * 121.72612 * 0.02562 * 21 20 19 23 23 C 1.40383 * 118.72895 * 359.97438 * 22 21 20 24 24 C 1.40647 * 122.27826 * 179.97438 * 23 22 21 25 25 C 1.36638 * 117.95766 * 180.02562 * 24 23 22 26 26 C 1.39399 * 119.91776 * 0.02562 * 25 24 23 27 27 N 1.31202 * 121.85840 * 0.02562 * 26 25 24 28 28 C 1.33252 * 121.22167 * 359.97438 * 27 26 25 29 29 H 0.97000 * 120.00028 * 359.97438 * 1 2 3 30 30 H 1.09003 * 110.36609 * 37.05765 * 10 9 7 31 31 H 1.09001 * 110.46201 * 274.78334 * 10 9 7 32 32 H 1.09001 * 111.00111 * 278.94368 * 11 10 9 33 33 H 1.08996 * 111.00896 * 155.08475 * 11 10 9 34 34 H 1.09000 * 110.71998 * 206.13432 * 12 11 10 35 35 H 1.08997 * 110.71904 * 82.86465 * 12 11 10 36 36 H 1.09000 * 109.47251 * 62.40048 * 15 13 9 37 37 H 1.08998 * 109.47460 * 302.40027 * 15 13 9 38 38 H 0.96998 * 119.99922 * 5.12791 * 16 15 13 39 39 H 1.07999 * 119.13242 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.63382 * 179.97438 * 22 21 20 41 41 H 1.08005 * 121.01961 * 0.02562 * 24 23 22 42 42 H 1.07998 * 120.04558 * 179.97438 * 25 24 23 43 43 H 1.08009 * 119.07165 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1072 -2.5530 -0.3045 11 6 -0.2460 -4.0224 -0.7751 12 6 0.7641 -4.7441 0.1556 13 6 1.8976 -3.7077 0.3054 14 1 2.7030 -3.9355 -0.3929 15 6 2.4321 -3.7246 1.7389 16 7 3.0509 -5.0237 2.0141 17 6 3.5007 -5.3070 3.2526 18 8 3.3935 -4.4845 4.1411 19 6 4.1249 -6.6187 3.5306 20 7 4.2413 -7.5135 2.5653 21 6 4.7883 -8.6999 2.7532 22 6 5.2778 -9.0856 3.9819 23 6 5.1888 -8.1864 5.0563 24 6 5.6639 -8.5027 6.3418 25 6 5.5317 -7.5612 7.3231 26 6 4.9399 -6.3328 7.0330 27 7 4.4976 -6.0437 5.8321 28 6 4.5960 -6.9174 4.8308 29 1 -0.4850 0.8400 0.0004 30 1 -0.4069 -1.8701 -1.0995 31 1 -0.7090 -2.3821 0.5882 32 1 0.0430 -4.1266 -1.8209 33 1 -1.2589 -4.3907 -0.6127 34 1 1.1349 -5.6564 -0.3116 35 1 0.3102 -4.9617 1.1224 36 1 1.6100 -3.5589 2.4352 37 1 3.1746 -2.9357 1.8593 38 1 3.1366 -5.6800 1.3050 39 1 4.8530 -9.3866 1.9221 40 1 5.7216 -10.0611 4.1159 41 1 6.1192 -9.4603 6.5468 42 1 5.8845 -7.7686 8.3225 43 1 4.8420 -5.5987 7.8192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027938573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:31 Heat of formation + Delta-G solvation = 40.534485 kcal Electronic energy + Delta-G solvation = -26778.551820 eV Core-core repulsion = 23016.653464 eV Total energy + Delta-G solvation = -3761.898356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.33888 -40.55363 -39.27973 -38.91399 -35.74839 -34.74753 -34.40303 -32.52066 -31.83466 -31.33657 -30.20488 -27.01755 -26.48997 -25.56989 -25.08028 -24.02464 -22.09154 -21.63018 -21.19505 -19.84512 -18.99049 -18.56048 -18.46443 -17.28288 -17.26739 -16.62746 -16.59620 -16.02500 -15.74877 -15.64936 -15.51300 -15.28996 -14.95939 -14.56802 -14.19632 -14.01338 -13.97444 -13.71962 -13.66676 -13.40387 -13.12437 -12.99266 -12.87980 -12.65786 -12.04111 -11.89316 -11.82896 -11.73582 -11.50390 -11.42094 -11.36696 -10.97558 -10.68539 -10.37787 -10.19230 -10.10411 -9.46050 -8.87338 -7.89418 -5.27242 -1.11412 -0.33147 0.64708 1.42763 1.45585 1.54039 1.65053 1.99641 2.17109 2.48349 3.03763 3.05962 3.21594 3.29920 3.42787 3.65080 3.71751 3.77426 3.93115 3.94731 3.97001 4.22057 4.25517 4.31472 4.43824 4.48084 4.52524 4.59918 4.65619 4.70898 4.93772 4.95731 4.97669 5.10496 5.12730 5.19687 5.34744 5.35846 5.45274 5.55187 5.62464 5.65355 5.76880 6.21849 6.43607 6.67616 6.95594 7.08133 7.22534 7.74535 8.41083 9.21678 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017546 B = 0.002883 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.416708 B = 9708.285918 C =10732.853964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.974 3.026 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.242 4.242 8 H 0.075 0.925 9 N -0.610 5.610 10 C 0.174 3.826 11 C -0.132 4.132 12 C -0.113 4.113 13 C 0.150 3.850 14 H 0.051 0.949 15 C 0.131 3.869 16 N -0.693 5.693 17 C 0.552 3.448 18 O -0.546 6.546 19 C 0.098 3.902 20 N -0.447 5.447 21 C 0.057 3.943 22 C -0.086 4.086 23 C -0.105 4.105 24 C -0.048 4.048 25 C -0.154 4.154 26 C 0.126 3.874 27 N -0.491 5.491 28 C 0.081 3.919 29 H 0.248 0.752 30 H 0.038 0.962 31 H -0.009 1.009 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.037 0.963 37 H 0.034 0.966 38 H 0.417 0.583 39 H 0.206 0.794 40 H 0.200 0.800 41 H 0.195 0.805 42 H 0.186 0.814 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.834 -27.569 10.724 32.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.802 3.198 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.334 5.334 10 C 0.049 3.951 11 C -0.170 4.170 12 C -0.150 4.150 13 C 0.042 3.958 14 H 0.069 0.931 15 C 0.005 3.995 16 N -0.346 5.346 17 C 0.337 3.663 18 O -0.422 6.422 19 C -0.052 4.052 20 N -0.160 5.160 21 C -0.091 4.091 22 C -0.106 4.106 23 C -0.112 4.112 24 C -0.073 4.073 25 C -0.174 4.174 26 C -0.047 4.047 27 N -0.200 5.200 28 C -0.043 4.043 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.009 0.991 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.254 0.746 39 H 0.222 0.778 40 H 0.217 0.783 41 H 0.212 0.788 42 H 0.203 0.797 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 11.982 -25.779 10.161 30.189 hybrid contribution 0.667 0.708 0.816 1.270 sum 12.649 -25.071 10.977 30.150 Atomic orbital electron populations 1.70143 1.06274 1.25447 1.57432 1.25705 0.96564 1.01028 1.02023 0.85158 0.77602 0.79383 0.77688 1.20620 1.21993 1.19977 1.19300 0.90717 0.83622 1.43437 0.90718 1.44748 1.06943 1.02056 1.79665 1.21270 0.83986 0.93470 0.96350 1.22873 0.99531 0.95251 0.99337 1.22574 0.95275 0.97392 0.99787 1.21303 0.96077 0.86910 0.91464 0.93125 1.21736 0.95631 0.83401 0.98736 1.45731 1.59697 1.18010 1.11175 1.18226 0.78934 0.86291 0.82891 1.90823 1.56581 1.48858 1.45904 1.21063 1.00327 0.94190 0.89642 1.67257 1.12244 1.03369 1.33151 1.23337 0.94868 0.91898 0.99006 1.22995 0.95668 1.00854 0.91132 1.19379 0.99856 0.93864 0.98121 1.22013 0.94556 1.01498 0.89273 1.22518 0.98682 0.93240 1.02989 1.23881 0.90495 0.97120 0.93216 1.68248 1.17119 1.33498 1.01167 1.19683 0.98572 0.92332 0.93694 0.94245 0.94328 0.99070 0.90859 0.89815 0.87928 0.92085 0.94466 0.94745 0.74560 0.77751 0.78329 0.78786 0.79668 0.80502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.78 10.58 21.65 0.23 -58.55 16 2 C -0.06 -3.53 5.47 84.86 0.46 -3.06 16 3 Si 0.97 48.07 29.55 68.60 2.03 50.10 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 6 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 7 C -0.24 -14.11 9.76 84.03 0.82 -13.29 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.61 -32.35 3.13 -668.26 -2.09 -34.44 16 10 C 0.17 8.87 5.41 86.86 0.47 9.34 16 11 C -0.13 -4.84 7.09 31.99 0.23 -4.61 16 12 C -0.11 -3.83 6.10 31.78 0.19 -3.63 16 13 C 0.15 6.32 3.22 45.34 0.15 6.46 16 14 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 15 C 0.13 5.78 5.07 86.38 0.44 6.21 16 16 N -0.69 -25.30 5.32 -465.90 -2.48 -27.77 16 17 C 0.55 21.89 7.81 86.80 0.68 22.56 16 18 O -0.55 -26.25 15.21 -3.86 -0.06 -26.30 16 19 C 0.10 3.13 6.81 42.46 0.29 3.42 16 20 N -0.45 -10.94 9.48 -184.13 -1.75 -12.69 16 21 C 0.06 0.82 11.12 84.56 0.94 1.76 16 22 C -0.09 -0.91 9.93 22.68 0.23 -0.68 16 23 C -0.10 -1.82 5.75 -21.27 -0.12 -1.94 16 24 C -0.05 -0.46 9.94 22.48 0.22 -0.23 16 25 C -0.15 -1.63 10.03 22.18 0.22 -1.41 16 26 C 0.13 2.55 11.14 85.07 0.95 3.50 16 27 N -0.49 -15.58 8.49 -187.91 -1.60 -17.17 16 28 C 0.08 2.35 6.61 40.63 0.27 2.62 16 29 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 30 H 0.04 2.18 6.94 -2.39 -0.02 2.17 16 31 H -0.01 -0.50 8.06 -2.39 -0.02 -0.52 16 32 H 0.07 2.51 8.14 -2.39 -0.02 2.50 16 33 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.06 2.12 7.81 -2.39 -0.02 2.11 16 36 H 0.04 1.84 8.08 -2.39 -0.02 1.82 16 37 H 0.03 1.72 7.92 -2.39 -0.02 1.70 16 38 H 0.42 12.67 7.68 -92.71 -0.71 11.96 16 39 H 0.21 1.20 8.06 -2.91 -0.02 1.17 16 40 H 0.20 -0.06 8.06 -2.91 -0.02 -0.08 16 41 H 0.20 -0.11 8.06 -2.91 -0.02 -0.14 16 42 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16 43 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -88.32 359.82 1.05 -87.28 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.33 Total: 12.55 kcal Atomic # 6 Polarization: 20.57 SS G_CDS: 6.43 Total: 27.01 kcal Atomic # 7 Polarization: -142.95 SS G_CDS: -7.68 Total: -150.62 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.06 Total: -26.30 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Total: -88.32 1.05 -87.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027938573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.810 kcal (2) G-P(sol) polarization free energy of solvation -88.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds