Wall clock time and date at job start Tue Mar 31 2020 14:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00083 * 2 1 4 4 H 1.48501 * 109.47101 * 239.99684 * 3 2 1 5 5 H 1.48499 * 109.47458 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47252 * 120.00010 * 3 2 1 7 7 C 1.38813 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27197 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29408 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21546 * 120.00336 * 359.97438 * 17 16 15 19 19 C 1.47904 * 119.99740 * 179.97438 * 17 16 15 20 20 N 1.32133 * 120.03422 * 359.97438 * 19 17 16 21 21 C 1.31980 * 122.76850 * 180.02562 * 20 19 17 22 22 C 1.37773 * 121.73131 * 0.02562 * 21 20 19 23 23 C 1.40390 * 118.72412 * 359.97438 * 22 21 20 24 24 C 1.40652 * 122.27992 * 180.02562 * 23 22 21 25 25 C 1.36642 * 117.94921 * 179.97438 * 24 23 22 26 26 C 1.39391 * 119.93021 * 359.97438 * 25 24 23 27 27 N 1.31212 * 121.85257 * 359.97438 * 26 25 24 28 28 C 1.33261 * 121.22057 * 359.74369 * 27 26 25 29 29 H 0.97000 * 119.99954 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 31 31 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 32 32 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 33 33 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 34 34 H 1.08999 * 110.62880 * 277.00832 * 12 11 10 35 35 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 36 36 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 37 37 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 38 38 H 0.96996 * 120.00160 * 4.66169 * 16 15 13 39 39 H 1.08000 * 119.13132 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.63784 * 179.97438 * 22 21 20 41 41 H 1.07995 * 121.02398 * 359.97438 * 24 23 22 42 42 H 1.07995 * 120.03425 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.07945 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1119 -2.5503 0.2843 11 6 -0.2604 -4.0153 0.7655 12 6 0.7664 -4.7456 -0.1418 13 6 1.9022 -3.7105 -0.2841 14 1 2.6954 -3.9299 0.4304 15 6 2.4583 -3.7409 -1.7092 16 7 3.1251 -5.0237 -1.9458 17 6 3.7748 -5.2413 -3.1064 18 8 3.8072 -4.3735 -3.9568 19 6 4.4485 -6.5362 -3.3451 20 7 4.4142 -7.4799 -2.4209 21 6 4.9966 -8.6539 -2.5767 22 6 5.6858 -8.9740 -3.7259 23 6 5.7650 -8.0202 -4.7530 24 6 6.4486 -8.2679 -5.9570 25 6 6.4693 -7.2766 -6.8972 26 6 5.8246 -6.0665 -6.6464 27 7 5.1875 -5.8414 -5.5216 28 6 5.1247 -6.7681 -4.5660 29 1 -0.4850 0.8401 0.0004 30 1 -0.4235 -1.8601 1.0682 31 1 -0.6985 -2.3866 -0.6197 32 1 0.0111 -4.1106 1.8169 33 1 -1.2711 -4.3837 0.5897 34 1 0.3274 -4.9724 -1.1133 35 1 1.1302 -5.6534 0.3396 36 1 1.6415 -3.6192 -2.4206 37 1 3.1751 -2.9297 -1.8368 38 1 3.0990 -5.7163 -1.2673 39 1 4.9311 -9.3828 -1.7825 40 1 6.1562 -9.9401 -3.8345 41 1 6.9418 -9.2124 -6.1329 42 1 6.9840 -7.4308 -7.8341 43 1 5.8500 -5.2923 -7.3990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027938574.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:34 Heat of formation + Delta-G solvation = 66.514793 kcal Electronic energy + Delta-G solvation = -26765.264920 eV Core-core repulsion = 23004.493154 eV Total energy + Delta-G solvation = -3760.771766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53419 -39.19479 -38.17652 -37.46103 -34.13954 -33.96920 -32.42146 -31.78423 -30.88692 -29.54673 -28.54533 -25.83110 -24.82275 -24.38824 -24.08965 -22.88915 -20.63869 -20.09461 -19.50621 -18.88328 -17.84899 -17.78329 -16.75150 -16.28945 -15.71871 -15.45612 -15.10389 -14.69357 -14.59643 -14.42177 -14.32960 -13.88867 -13.71353 -13.44201 -13.09944 -13.01546 -12.71046 -12.52132 -12.02576 -11.80429 -11.68789 -11.27536 -11.06514 -10.89417 -10.72343 -10.25367 -10.13945 -10.10427 -10.04302 -9.80906 -9.75194 -9.66927 -9.63820 -9.24212 -8.78532 -8.56795 -8.43712 -6.78249 -5.70568 -3.06821 -0.33387 0.37460 1.38445 2.51059 3.22249 3.26006 3.45840 3.49876 3.51543 3.88783 3.93573 4.00574 4.16223 4.30001 4.42827 4.47237 4.56087 4.79649 5.02325 5.09556 5.23391 5.32099 5.41166 5.48624 5.53775 5.59402 5.70267 5.72688 5.89152 5.97188 6.14047 6.21935 6.24837 6.33394 6.53751 6.62301 6.70529 6.80331 6.90560 7.14798 7.35721 7.58265 7.64447 7.66611 7.85126 7.96500 8.31795 8.58455 9.23660 9.84160 10.51486 11.41176 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017126 B = 0.002917 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.580815 B = 9596.084034 C =10764.642221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.002 4.002 3 Si 0.911 3.089 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.232 4.232 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.109 3.891 16 N -0.704 5.704 17 C 0.555 3.445 18 O -0.496 6.496 19 C 0.151 3.849 20 N -0.445 5.445 21 C 0.077 3.923 22 C -0.128 4.128 23 C -0.084 4.084 24 C -0.066 4.066 25 C -0.155 4.155 26 C 0.130 3.870 27 N -0.417 5.417 28 C 0.104 3.896 29 H 0.254 0.746 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.404 0.596 39 H 0.166 0.834 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.524 -22.263 -9.538 26.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.361 4.361 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.044 3.956 14 H 0.057 0.943 15 C -0.016 4.016 16 N -0.356 5.356 17 C 0.336 3.664 18 O -0.368 6.368 19 C -0.002 4.002 20 N -0.158 5.158 21 C -0.070 4.070 22 C -0.149 4.149 23 C -0.091 4.091 24 C -0.092 4.092 25 C -0.176 4.176 26 C -0.044 4.044 27 N -0.125 5.125 28 C -0.021 4.021 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.239 0.761 39 H 0.184 0.816 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 10.557 -20.458 -9.044 24.734 hybrid contribution 1.418 -0.605 -0.781 1.729 sum 11.976 -21.063 -9.825 26.146 Atomic orbital electron populations 1.69931 1.04995 1.25335 1.56061 1.24891 0.95677 0.97818 1.01522 0.86222 0.78577 0.83089 0.78041 1.20928 1.21604 1.21111 1.18958 0.90407 0.82211 1.44479 0.90664 1.44485 1.05858 1.00797 1.80173 1.21465 0.84677 0.90290 0.98868 1.23025 0.97430 0.99590 0.98651 1.22641 0.97014 0.97053 0.99803 1.21128 0.94478 0.87953 0.92072 0.94345 1.22290 0.96708 0.83198 0.99366 1.46011 1.53252 1.18746 1.17628 1.17615 0.80087 0.85332 0.83332 1.90879 1.58901 1.43203 1.43798 1.21753 0.95312 0.94526 0.88638 1.67390 1.16626 1.01288 1.30480 1.22602 0.94008 0.93346 0.97006 1.22359 0.99412 0.99589 0.93557 1.18984 0.98861 0.95039 0.96246 1.21407 0.96333 0.99793 0.91690 1.22137 1.00143 0.94657 1.00669 1.23370 0.90970 0.95848 0.94232 1.68352 1.13903 1.30139 1.00074 1.19522 0.97345 0.90354 0.94851 0.93611 0.90821 0.95703 0.92328 0.92365 0.91836 0.92250 0.91814 0.90922 0.76124 0.81645 0.83698 0.83779 0.83925 0.81710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.12 10.54 55.49 0.58 -26.53 16 2 C 0.00 -0.06 5.47 -17.43 -0.10 -0.15 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.23 -6.51 9.73 -15.06 -0.15 -6.66 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.65 16 9 N -0.59 -15.01 3.13 -162.57 -0.51 -15.52 16 10 C 0.17 4.18 5.42 -2.53 -0.01 4.17 16 11 C -0.15 -2.80 7.10 -24.52 -0.17 -2.97 16 12 C -0.13 -2.22 6.07 -24.83 -0.15 -2.37 16 13 C 0.15 3.15 3.22 -66.95 -0.22 2.93 16 14 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 15 C 0.11 2.25 5.09 -4.04 -0.02 2.23 16 16 N -0.70 -12.22 5.39 -61.23 -0.33 -12.55 16 17 C 0.55 10.22 7.81 -12.30 -0.10 10.12 16 18 O -0.50 -10.83 15.21 5.33 0.08 -10.75 16 19 C 0.15 2.33 6.81 -82.55 -0.56 1.76 16 20 N -0.45 -5.69 9.48 -9.55 -0.09 -5.78 16 21 C 0.08 0.69 11.12 -17.66 -0.20 0.50 16 22 C -0.13 -1.01 9.93 -38.94 -0.39 -1.39 16 23 C -0.08 -0.86 5.75 -106.79 -0.61 -1.48 16 24 C -0.07 -0.48 9.95 -39.25 -0.39 -0.87 16 25 C -0.15 -1.10 10.03 -39.73 -0.40 -1.49 16 26 C 0.13 1.33 11.14 -17.39 -0.19 1.14 16 27 N -0.42 -6.28 8.49 -10.75 -0.09 -6.37 16 28 C 0.10 1.49 6.61 -84.62 -0.56 0.93 16 29 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.07 1.99 6.86 -51.93 -0.36 1.63 16 31 H 0.02 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.10 7.78 -51.93 -0.40 0.70 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.42 8.03 -51.93 -0.42 1.00 16 37 H 0.07 1.69 7.86 -51.93 -0.41 1.28 16 38 H 0.40 6.09 7.59 -40.82 -0.31 5.78 16 39 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 41 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 42 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 43 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 359.58 15.07 5.42 5.42 Total: -1.00 -35.34 359.58 -9.84 -45.18 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.67 Total: 2.97 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -4.21 Total: 6.38 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: -0.44 Total: -66.75 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.34 -9.84 -45.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027938574.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.693 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds