Wall clock time and date at job start Tue Mar 31 2020 14:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00083 * 2 1 4 4 H 1.48501 * 109.47101 * 239.99684 * 3 2 1 5 5 H 1.48499 * 109.47458 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47252 * 120.00010 * 3 2 1 7 7 C 1.38813 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27197 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29408 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21546 * 120.00336 * 359.97438 * 17 16 15 19 19 C 1.47904 * 119.99740 * 179.97438 * 17 16 15 20 20 N 1.32133 * 120.03422 * 359.97438 * 19 17 16 21 21 C 1.31980 * 122.76850 * 180.02562 * 20 19 17 22 22 C 1.37773 * 121.73131 * 0.02562 * 21 20 19 23 23 C 1.40390 * 118.72412 * 359.97438 * 22 21 20 24 24 C 1.40652 * 122.27992 * 180.02562 * 23 22 21 25 25 C 1.36642 * 117.94921 * 179.97438 * 24 23 22 26 26 C 1.39391 * 119.93021 * 359.97438 * 25 24 23 27 27 N 1.31212 * 121.85257 * 359.97438 * 26 25 24 28 28 C 1.33261 * 121.22057 * 359.74369 * 27 26 25 29 29 H 0.97000 * 119.99954 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 31 31 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 32 32 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 33 33 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 34 34 H 1.08999 * 110.62880 * 277.00832 * 12 11 10 35 35 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 36 36 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 37 37 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 38 38 H 0.96996 * 120.00160 * 4.66169 * 16 15 13 39 39 H 1.08000 * 119.13132 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.63784 * 179.97438 * 22 21 20 41 41 H 1.07995 * 121.02398 * 359.97438 * 24 23 22 42 42 H 1.07995 * 120.03425 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.07945 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1119 -2.5503 0.2843 11 6 -0.2604 -4.0153 0.7655 12 6 0.7664 -4.7456 -0.1418 13 6 1.9022 -3.7105 -0.2841 14 1 2.6954 -3.9299 0.4304 15 6 2.4583 -3.7409 -1.7092 16 7 3.1251 -5.0237 -1.9458 17 6 3.7748 -5.2413 -3.1064 18 8 3.8072 -4.3735 -3.9568 19 6 4.4485 -6.5362 -3.3451 20 7 4.4142 -7.4799 -2.4209 21 6 4.9966 -8.6539 -2.5767 22 6 5.6858 -8.9740 -3.7259 23 6 5.7650 -8.0202 -4.7530 24 6 6.4486 -8.2679 -5.9570 25 6 6.4693 -7.2766 -6.8972 26 6 5.8246 -6.0665 -6.6464 27 7 5.1875 -5.8414 -5.5216 28 6 5.1247 -6.7681 -4.5660 29 1 -0.4850 0.8401 0.0004 30 1 -0.4235 -1.8601 1.0682 31 1 -0.6985 -2.3866 -0.6197 32 1 0.0111 -4.1106 1.8169 33 1 -1.2711 -4.3837 0.5897 34 1 0.3274 -4.9724 -1.1133 35 1 1.1302 -5.6534 0.3396 36 1 1.6415 -3.6192 -2.4206 37 1 3.1751 -2.9297 -1.8368 38 1 3.0990 -5.7163 -1.2673 39 1 4.9311 -9.3828 -1.7825 40 1 6.1562 -9.9401 -3.8345 41 1 6.9418 -9.2124 -6.1329 42 1 6.9840 -7.4308 -7.8341 43 1 5.8500 -5.2923 -7.3990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027938574.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:34 Heat of formation + Delta-G solvation = 40.736110 kcal Electronic energy + Delta-G solvation = -26766.382767 eV Core-core repulsion = 23004.493154 eV Total energy + Delta-G solvation = -3761.889613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.34032 -40.55276 -39.27776 -38.91632 -35.75200 -34.74842 -34.40212 -32.52235 -31.83497 -31.33219 -30.20632 -27.01446 -26.49056 -25.57066 -25.08147 -24.02600 -22.10544 -21.61439 -21.18523 -19.84646 -18.98788 -18.56311 -18.48989 -17.30814 -17.26267 -16.63432 -16.57338 -16.01539 -15.75958 -15.65186 -15.48652 -15.28921 -14.96568 -14.55058 -14.20060 -14.01656 -13.98285 -13.72315 -13.65132 -13.40328 -13.12518 -13.02691 -12.87724 -12.67535 -12.06470 -11.88205 -11.82721 -11.70215 -11.48385 -11.41749 -11.36597 -10.97676 -10.69048 -10.37983 -10.19327 -10.12090 -9.46297 -8.87695 -7.89004 -5.26754 -1.11620 -0.33300 0.64500 1.42384 1.46717 1.52210 1.64814 1.99433 2.16862 2.48348 3.03566 3.05777 3.21434 3.29658 3.42669 3.65004 3.71686 3.77098 3.92798 3.94592 3.98046 4.22160 4.25570 4.31356 4.42057 4.48045 4.53378 4.59824 4.65471 4.71322 4.94205 4.95694 4.98233 5.10330 5.13257 5.20569 5.34274 5.35715 5.45421 5.54742 5.62321 5.66255 5.77580 6.22172 6.43348 6.67418 6.95416 7.08328 7.22248 7.74783 8.40723 9.21408 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017126 B = 0.002917 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.580815 B = 9596.084034 C =10764.642221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.973 3.027 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.610 5.610 10 C 0.173 3.827 11 C -0.131 4.131 12 C -0.114 4.114 13 C 0.150 3.850 14 H 0.048 0.952 15 C 0.131 3.869 16 N -0.693 5.693 17 C 0.552 3.448 18 O -0.546 6.546 19 C 0.098 3.902 20 N -0.447 5.447 21 C 0.057 3.943 22 C -0.086 4.086 23 C -0.105 4.105 24 C -0.048 4.048 25 C -0.154 4.154 26 C 0.126 3.874 27 N -0.492 5.492 28 C 0.081 3.919 29 H 0.249 0.751 30 H 0.040 0.960 31 H -0.009 1.009 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.037 0.963 37 H 0.034 0.966 38 H 0.417 0.583 39 H 0.206 0.794 40 H 0.200 0.800 41 H 0.195 0.805 42 H 0.186 0.814 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.009 -27.195 -9.935 32.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.801 3.199 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.198 1.198 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.335 5.335 10 C 0.048 3.952 11 C -0.170 4.170 12 C -0.151 4.151 13 C 0.042 3.958 14 H 0.066 0.934 15 C 0.005 3.995 16 N -0.346 5.346 17 C 0.336 3.664 18 O -0.422 6.422 19 C -0.052 4.052 20 N -0.160 5.160 21 C -0.091 4.091 22 C -0.106 4.106 23 C -0.112 4.112 24 C -0.073 4.073 25 C -0.174 4.174 26 C -0.047 4.047 27 N -0.200 5.200 28 C -0.043 4.043 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.010 0.990 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.255 0.745 39 H 0.223 0.777 40 H 0.217 0.783 41 H 0.212 0.788 42 H 0.203 0.797 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 13.056 -25.431 -9.423 30.100 hybrid contribution 0.795 0.733 -0.785 1.336 sum 13.851 -24.698 -10.208 30.101 Atomic orbital electron populations 1.70134 1.06204 1.25508 1.57404 1.25674 0.96575 1.00952 1.02039 0.85243 0.77358 0.79163 0.78142 1.21065 1.21583 1.19843 1.19256 0.90668 0.83718 1.43558 0.90892 1.44750 1.06430 1.01796 1.80482 1.21297 0.83818 0.93608 0.96457 1.22892 0.99471 0.95228 0.99381 1.22619 0.95092 0.97312 1.00108 1.21304 0.95963 0.86908 0.91602 0.93393 1.21741 0.94981 0.83925 0.98884 1.45735 1.53080 1.17652 1.18180 1.18235 0.79238 0.86516 0.82386 1.90823 1.60709 1.45381 1.45246 1.21062 0.99227 0.93990 0.90963 1.67252 1.16677 1.02132 1.29965 1.23338 0.94147 0.92621 0.99003 1.22998 0.95908 1.00417 0.91313 1.19384 0.99324 0.93982 0.98531 1.22014 0.94253 1.01366 0.89693 1.22516 0.99422 0.93042 1.02452 1.23879 0.89837 0.97853 0.93140 1.68257 1.17256 1.32362 1.02171 1.19686 0.98105 0.92161 0.94337 0.94215 0.94157 0.99047 0.90982 0.89677 0.91745 0.87875 0.94416 0.94705 0.74546 0.77734 0.78316 0.78775 0.79667 0.80508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.69 10.54 21.65 0.23 -58.46 16 2 C -0.06 -3.49 5.47 84.86 0.46 -3.02 16 3 Si 0.97 48.23 29.55 68.60 2.03 50.26 16 4 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.24 -14.26 9.73 84.03 0.82 -13.45 16 8 H 0.07 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.61 -32.44 3.13 -668.26 -2.09 -34.53 16 10 C 0.17 8.78 5.42 86.86 0.47 9.25 16 11 C -0.13 -4.80 7.10 32.03 0.23 -4.57 16 12 C -0.11 -3.81 6.07 31.82 0.19 -3.62 16 13 C 0.15 6.32 3.22 45.34 0.15 6.47 16 14 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 15 C 0.13 5.77 5.09 86.38 0.44 6.21 16 16 N -0.69 -25.38 5.39 -465.92 -2.51 -27.89 16 17 C 0.55 21.95 7.81 86.80 0.68 22.63 16 18 O -0.55 -26.33 15.21 -3.86 -0.06 -26.39 16 19 C 0.10 3.13 6.81 42.46 0.29 3.42 16 20 N -0.45 -10.98 9.48 -184.13 -1.75 -12.72 16 21 C 0.06 0.82 11.12 84.56 0.94 1.76 16 22 C -0.09 -0.91 9.93 22.68 0.23 -0.69 16 23 C -0.10 -1.83 5.75 -21.27 -0.12 -1.95 16 24 C -0.05 -0.46 9.95 22.49 0.22 -0.23 16 25 C -0.15 -1.64 10.03 22.17 0.22 -1.42 16 26 C 0.13 2.56 11.14 85.06 0.95 3.51 16 27 N -0.49 -15.63 8.49 -187.92 -1.60 -17.22 16 28 C 0.08 2.36 6.61 40.62 0.27 2.63 16 29 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.04 2.28 6.86 -2.39 -0.02 2.26 16 31 H -0.01 -0.48 8.08 -2.39 -0.02 -0.50 16 32 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.06 2.18 7.78 -2.39 -0.02 2.16 16 35 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.04 1.83 8.03 -2.39 -0.02 1.81 16 37 H 0.03 1.77 7.86 -2.39 -0.02 1.75 16 38 H 0.42 12.69 7.59 -92.71 -0.70 11.98 16 39 H 0.21 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.20 -0.06 8.06 -2.91 -0.02 -0.08 16 41 H 0.20 -0.11 8.06 -2.91 -0.02 -0.13 16 42 H 0.19 0.33 8.06 -2.91 -0.02 0.31 16 43 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -88.53 359.58 1.02 -87.51 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.34 Total: 12.51 kcal Atomic # 6 Polarization: 20.50 SS G_CDS: 6.43 Total: 26.93 kcal Atomic # 7 Polarization: -143.11 SS G_CDS: -7.72 Total: -150.83 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.06 Total: -26.39 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -88.53 1.02 -87.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027938574.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.247 kcal (2) G-P(sol) polarization free energy of solvation -88.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds