Wall clock time and date at job start Tue Mar 31 2020 15:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00095 * 2 1 4 4 H 1.48500 * 109.47237 * 275.18478 * 3 2 1 5 5 H 1.48502 * 109.46996 * 35.18357 * 3 2 1 6 6 H 1.48498 * 109.47347 * 155.18327 * 3 2 1 7 7 C 1.38811 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00225 * 342.00310 * 7 2 1 9 9 N 1.36937 * 120.00164 * 162.00857 * 7 2 1 10 10 C 1.47427 * 125.64775 * 325.01613 * 9 7 2 11 11 C 1.54905 * 104.83433 * 155.88884 * 10 9 7 12 12 C 1.55158 * 101.57883 * 37.01195 * 11 10 9 13 13 C 1.47026 * 125.65010 * 145.03678 * 9 7 2 14 14 H 1.08994 * 110.01039 * 300.52683 * 13 9 7 15 15 C 1.52992 * 109.88103 * 61.62464 * 13 9 7 16 16 N 1.46500 * 109.47099 * 296.15497 * 15 13 9 17 17 C 1.34776 * 120.00428 * 173.65725 * 16 15 13 18 18 O 1.21554 * 119.99624 * 0.02562 * 17 16 15 19 19 C 1.47911 * 120.00322 * 179.97438 * 17 16 15 20 20 N 1.32373 * 120.63352 * 4.98359 * 19 17 16 21 21 N 1.28094 * 123.17677 * 179.69034 * 20 19 17 22 22 C 1.31808 * 123.49682 * 0.60219 * 21 20 19 23 23 C 1.40407 * 119.13803 * 359.71218 * 22 21 20 24 24 C 1.40227 * 122.74406 * 180.02562 * 23 22 21 25 25 C 1.36259 * 119.37051 * 179.97438 * 24 23 22 26 26 C 1.39379 * 121.07552 * 359.97438 * 25 24 23 27 27 C 1.36365 * 121.08402 * 359.97438 * 26 25 24 28 28 C 1.39835 * 119.42015 * 0.02562 * 27 26 25 29 29 H 0.97004 * 119.99477 * 0.02562 * 1 2 3 30 30 H 1.09005 * 110.36569 * 37.05128 * 10 9 7 31 31 H 1.09000 * 110.46126 * 274.77769 * 10 9 7 32 32 H 1.08995 * 111.00893 * 278.93561 * 11 10 9 33 33 H 1.09007 * 111.00499 * 155.08227 * 11 10 9 34 34 H 1.09001 * 110.71615 * 206.13506 * 12 11 10 35 35 H 1.08995 * 110.72156 * 82.86291 * 12 11 10 36 36 H 1.09004 * 109.47176 * 56.15539 * 15 13 9 37 37 H 1.08999 * 109.47295 * 176.15862 * 15 13 9 38 38 H 0.97006 * 119.99809 * 353.66523 * 16 15 13 39 39 H 1.07992 * 120.42745 * 179.68575 * 22 21 20 40 40 H 1.08008 * 120.31802 * 359.94577 * 24 23 22 41 41 H 1.08004 * 119.46183 * 179.97438 * 25 24 23 42 42 H 1.07997 * 119.45361 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.28599 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3882 2.1097 -1.3943 5 1 1.5067 2.6186 0.8067 6 1 3.5982 1.4111 0.5876 7 6 2.0102 -1.2021 0.0005 8 1 1.5099 -2.1144 0.2899 9 7 3.3294 -1.2314 -0.3657 10 6 3.9526 -0.3866 -1.4008 11 6 5.4528 -0.3329 -1.0186 12 6 5.6918 -1.7728 -0.4923 13 6 4.3587 -2.1107 0.2078 14 1 4.4470 -1.9320 1.2794 15 6 3.9935 -3.5744 -0.0471 16 7 2.7477 -3.8960 0.6535 17 6 2.1621 -5.0960 0.4706 18 8 2.6679 -5.9116 -0.2754 19 6 0.9047 -5.4209 1.1784 20 7 0.2915 -4.5094 1.9169 21 7 -0.8015 -4.7360 2.5454 22 6 -1.4209 -5.8993 2.5315 23 6 -0.8721 -6.9572 1.7892 24 6 -1.4675 -8.2250 1.7211 25 6 -0.8755 -9.2024 0.9789 26 6 0.3104 -8.9618 0.2872 27 6 0.9155 -7.7406 0.3308 28 6 0.3363 -6.7134 1.0825 29 1 -0.4849 0.8401 -0.0004 30 1 3.5209 0.6142 -1.3843 31 1 3.8279 -0.8365 -2.3858 32 1 5.6303 0.4039 -0.2353 33 1 6.0716 -0.1286 -1.8925 34 1 6.5168 -1.7910 0.2198 35 1 5.8786 -2.4592 -1.3181 36 1 3.8605 -3.7346 -1.1170 37 1 4.7932 -4.2176 0.3200 38 1 2.3443 -3.2451 1.2490 39 1 -2.3384 -6.0371 3.0842 40 1 -2.3865 -8.4250 2.2523 41 1 -1.3326 -10.1795 0.9258 42 1 0.7568 -9.7554 -0.2934 43 1 1.8340 -7.5682 -0.2105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028019878.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:11 Heat of formation + Delta-G solvation = 82.074867 kcal Electronic energy + Delta-G solvation = -27530.936159 eV Core-core repulsion = 23770.839129 eV Total energy + Delta-G solvation = -3760.097030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.42548 -39.21880 -38.04364 -37.86120 -34.19859 -33.34989 -32.59025 -31.80839 -30.62862 -29.94169 -29.29883 -26.02872 -24.74918 -24.28296 -23.73404 -22.63489 -21.11371 -20.32053 -19.68344 -18.43474 -18.14785 -17.54536 -16.53607 -16.24694 -16.00481 -15.51417 -15.35118 -14.69560 -14.68608 -14.37700 -14.26747 -13.92276 -13.55500 -13.21423 -13.00818 -12.62669 -12.49660 -12.41601 -12.33636 -11.96814 -11.67983 -11.32798 -11.28024 -11.25691 -10.91554 -10.71194 -10.54749 -10.44552 -10.19085 -9.80939 -9.59509 -9.51253 -9.44938 -9.39513 -8.66442 -8.53219 -8.38535 -6.82801 -5.94029 -3.39436 -0.01662 0.57658 1.54951 2.71361 3.21265 3.33967 3.37301 3.48514 3.52992 4.00272 4.05160 4.34227 4.44626 4.53681 4.60160 4.62618 4.91416 4.93639 5.06243 5.15671 5.16580 5.32340 5.42291 5.48707 5.52046 5.56425 5.69058 5.82244 5.83119 5.92586 6.04346 6.10554 6.11422 6.23895 6.25258 6.26139 6.33304 6.38691 6.58421 6.61392 6.83919 6.86020 6.96122 7.88017 7.96102 8.37026 8.51488 8.84674 8.86645 9.68755 10.24530 11.20036 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.003812 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.596188 B = 7344.316189 C = 8659.994367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.038 3.962 3 Si 0.887 3.113 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.261 4.261 8 H 0.097 0.903 9 N -0.601 5.601 10 C 0.118 3.882 11 C -0.136 4.136 12 C -0.120 4.120 13 C 0.141 3.859 14 H 0.050 0.950 15 C 0.112 3.888 16 N -0.676 5.676 17 C 0.573 3.427 18 O -0.548 6.548 19 C 0.071 3.929 20 N -0.209 5.209 21 N -0.254 5.254 22 C 0.092 3.908 23 C -0.087 4.087 24 C -0.098 4.098 25 C -0.100 4.100 26 C -0.109 4.109 27 C -0.088 4.088 28 C -0.047 4.047 29 H 0.263 0.737 30 H 0.041 0.959 31 H 0.031 0.969 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.425 0.575 39 H 0.179 0.821 40 H 0.138 0.862 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.675 -16.226 2.836 16.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.163 4.163 3 Si 0.718 3.282 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.389 4.389 8 H 0.114 0.886 9 N -0.327 5.327 10 C -0.006 4.006 11 C -0.174 4.174 12 C -0.158 4.158 13 C 0.034 3.966 14 H 0.068 0.932 15 C -0.013 4.013 16 N -0.328 5.328 17 C 0.356 3.644 18 O -0.427 6.427 19 C -0.087 4.087 20 N -0.046 5.046 21 N -0.086 5.086 22 C -0.082 4.082 23 C -0.094 4.094 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.128 4.128 27 C -0.107 4.107 28 C -0.055 4.055 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.267 0.733 39 H 0.196 0.804 40 H 0.156 0.844 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.816 -14.946 2.962 15.495 hybrid contribution -0.152 -0.117 -0.330 0.382 sum 2.663 -15.063 2.631 15.521 Atomic orbital electron populations 1.69831 1.05802 1.26637 1.51335 1.25408 0.95101 0.97768 0.98051 0.86749 0.80213 0.84414 0.76780 1.21734 1.23228 1.19375 1.18742 0.82356 0.94464 1.43317 0.88630 1.44715 1.05457 1.43659 1.38845 1.21877 0.90817 0.95230 0.92684 1.22783 0.97530 0.96686 1.00436 1.22480 0.96396 0.97034 0.99941 1.21284 0.89027 0.89213 0.97059 0.93241 1.22102 0.84351 0.97481 0.97402 1.46194 1.25336 1.15302 1.45946 1.17426 0.82567 0.82969 0.81477 1.90550 1.64719 1.48496 1.38955 1.23099 0.97105 0.91245 0.97226 1.72937 1.02277 1.26965 1.02379 1.72771 1.02395 1.19227 1.14173 1.24855 0.99566 0.89305 0.94444 1.18924 0.95465 0.96373 0.98662 1.20914 0.99996 0.91338 0.99516 1.21111 0.95471 0.99436 0.95933 1.21225 0.95359 0.97511 0.98711 1.22059 1.01446 0.91198 0.95956 1.18641 0.94706 0.94428 0.97684 0.92677 0.94156 0.95132 0.91561 0.91551 0.91356 0.91227 0.91146 0.92324 0.73320 0.80421 0.84378 0.85209 0.85068 0.80842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.97 55.49 0.78 -26.72 16 2 C 0.04 1.09 5.45 -17.43 -0.10 1.00 16 3 Si 0.89 22.47 24.79 -169.99 -4.21 18.25 16 4 H -0.29 -7.23 6.86 56.52 0.39 -6.85 16 5 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 6 H -0.27 -6.55 7.01 56.52 0.40 -6.15 16 7 C -0.26 -7.12 9.52 -15.06 -0.14 -7.26 16 8 H 0.10 2.74 5.46 -52.49 -0.29 2.45 16 9 N -0.60 -13.88 2.69 -162.58 -0.44 -14.32 16 10 C 0.12 2.51 6.20 -2.53 -0.02 2.49 16 11 C -0.14 -2.26 7.09 -24.58 -0.17 -2.43 16 12 C -0.12 -1.80 6.48 -24.90 -0.16 -1.97 16 13 C 0.14 2.64 3.31 -66.95 -0.22 2.42 16 14 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 15 C 0.11 2.01 5.16 -4.05 -0.02 1.99 16 16 N -0.68 -13.30 4.35 -61.23 -0.27 -13.56 16 17 C 0.57 11.12 7.79 -12.30 -0.10 11.02 16 18 O -0.55 -10.70 13.57 5.32 0.07 -10.63 16 19 C 0.07 1.32 6.90 -82.42 -0.57 0.75 16 20 N -0.21 -4.23 10.70 33.56 0.36 -3.87 16 21 N -0.25 -4.64 11.42 30.90 0.35 -4.29 16 22 C 0.09 1.25 11.20 -16.75 -0.19 1.07 16 23 C -0.09 -1.15 5.75 -106.85 -0.61 -1.76 16 24 C -0.10 -0.93 9.84 -39.55 -0.39 -1.32 16 25 C -0.10 -0.87 9.95 -39.87 -0.40 -1.27 16 26 C -0.11 -1.11 9.95 -39.83 -0.40 -1.51 16 27 C -0.09 -1.21 9.27 -39.66 -0.37 -1.58 16 28 C -0.05 -0.74 5.77 -106.57 -0.61 -1.35 16 29 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 30 H 0.04 0.94 3.16 -51.93 -0.16 0.77 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.95 7.85 -51.93 -0.41 0.55 16 36 H 0.07 1.36 8.12 -51.93 -0.42 0.93 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.43 9.04 5.65 -40.82 -0.23 8.81 16 39 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 41 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 42 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.17 2.61 5.12 -52.49 -0.27 2.34 16 LS Contribution 346.83 15.07 5.23 5.23 Total: -1.00 -33.81 346.83 -7.76 -41.57 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.16 Total: 8.05 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -4.46 Total: 0.29 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: 0.78 Total: -62.75 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.07 Total: -10.63 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.21 Total: 18.25 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.81 -7.76 -41.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028019878.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.641 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds