Wall clock time and date at job start Tue Mar 31 2020 15:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00095 * 2 1 4 4 H 1.48500 * 109.47237 * 275.18478 * 3 2 1 5 5 H 1.48502 * 109.46996 * 35.18357 * 3 2 1 6 6 H 1.48498 * 109.47347 * 155.18327 * 3 2 1 7 7 C 1.38811 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00225 * 342.00310 * 7 2 1 9 9 N 1.36937 * 120.00164 * 162.00857 * 7 2 1 10 10 C 1.47427 * 125.64775 * 325.01613 * 9 7 2 11 11 C 1.54905 * 104.83433 * 155.88884 * 10 9 7 12 12 C 1.55158 * 101.57883 * 37.01195 * 11 10 9 13 13 C 1.47026 * 125.65010 * 145.03678 * 9 7 2 14 14 H 1.08994 * 110.01039 * 300.52683 * 13 9 7 15 15 C 1.52992 * 109.88103 * 61.62464 * 13 9 7 16 16 N 1.46500 * 109.47099 * 296.15497 * 15 13 9 17 17 C 1.34776 * 120.00428 * 173.65725 * 16 15 13 18 18 O 1.21554 * 119.99624 * 0.02562 * 17 16 15 19 19 C 1.47911 * 120.00322 * 179.97438 * 17 16 15 20 20 N 1.32373 * 120.63352 * 4.98359 * 19 17 16 21 21 N 1.28094 * 123.17677 * 179.69034 * 20 19 17 22 22 C 1.31808 * 123.49682 * 0.60219 * 21 20 19 23 23 C 1.40407 * 119.13803 * 359.71218 * 22 21 20 24 24 C 1.40227 * 122.74406 * 180.02562 * 23 22 21 25 25 C 1.36259 * 119.37051 * 179.97438 * 24 23 22 26 26 C 1.39379 * 121.07552 * 359.97438 * 25 24 23 27 27 C 1.36365 * 121.08402 * 359.97438 * 26 25 24 28 28 C 1.39835 * 119.42015 * 0.02562 * 27 26 25 29 29 H 0.97004 * 119.99477 * 0.02562 * 1 2 3 30 30 H 1.09005 * 110.36569 * 37.05128 * 10 9 7 31 31 H 1.09000 * 110.46126 * 274.77769 * 10 9 7 32 32 H 1.08995 * 111.00893 * 278.93561 * 11 10 9 33 33 H 1.09007 * 111.00499 * 155.08227 * 11 10 9 34 34 H 1.09001 * 110.71615 * 206.13506 * 12 11 10 35 35 H 1.08995 * 110.72156 * 82.86291 * 12 11 10 36 36 H 1.09004 * 109.47176 * 56.15539 * 15 13 9 37 37 H 1.08999 * 109.47295 * 176.15862 * 15 13 9 38 38 H 0.97006 * 119.99809 * 353.66523 * 16 15 13 39 39 H 1.07992 * 120.42745 * 179.68575 * 22 21 20 40 40 H 1.08008 * 120.31802 * 359.94577 * 24 23 22 41 41 H 1.08004 * 119.46183 * 179.97438 * 25 24 23 42 42 H 1.07997 * 119.45361 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.28599 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3882 2.1097 -1.3943 5 1 1.5067 2.6186 0.8067 6 1 3.5982 1.4111 0.5876 7 6 2.0102 -1.2021 0.0005 8 1 1.5099 -2.1144 0.2899 9 7 3.3294 -1.2314 -0.3657 10 6 3.9526 -0.3866 -1.4008 11 6 5.4528 -0.3329 -1.0186 12 6 5.6918 -1.7728 -0.4923 13 6 4.3587 -2.1107 0.2078 14 1 4.4470 -1.9320 1.2794 15 6 3.9935 -3.5744 -0.0471 16 7 2.7477 -3.8960 0.6535 17 6 2.1621 -5.0960 0.4706 18 8 2.6679 -5.9116 -0.2754 19 6 0.9047 -5.4209 1.1784 20 7 0.2915 -4.5094 1.9169 21 7 -0.8015 -4.7360 2.5454 22 6 -1.4209 -5.8993 2.5315 23 6 -0.8721 -6.9572 1.7892 24 6 -1.4675 -8.2250 1.7211 25 6 -0.8755 -9.2024 0.9789 26 6 0.3104 -8.9618 0.2872 27 6 0.9155 -7.7406 0.3308 28 6 0.3363 -6.7134 1.0825 29 1 -0.4849 0.8401 -0.0004 30 1 3.5209 0.6142 -1.3843 31 1 3.8279 -0.8365 -2.3858 32 1 5.6303 0.4039 -0.2353 33 1 6.0716 -0.1286 -1.8925 34 1 6.5168 -1.7910 0.2198 35 1 5.8786 -2.4592 -1.3181 36 1 3.8605 -3.7346 -1.1170 37 1 4.7932 -4.2176 0.3200 38 1 2.3443 -3.2451 1.2490 39 1 -2.3384 -6.0371 3.0842 40 1 -2.3865 -8.4250 2.2523 41 1 -1.3326 -10.1795 0.9258 42 1 0.7568 -9.7554 -0.2934 43 1 1.8340 -7.5682 -0.2105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028019878.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:11 Heat of formation + Delta-G solvation = 57.847235 kcal Electronic energy + Delta-G solvation = -27531.986748 eV Core-core repulsion = 23770.839129 eV Total energy + Delta-G solvation = -3761.147619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.56527 -40.67409 -39.42157 -39.03753 -35.68884 -34.64088 -34.46178 -32.81409 -31.77043 -31.70914 -30.70000 -27.32417 -26.36675 -25.34266 -25.31445 -23.72538 -22.56307 -21.73953 -21.22825 -19.77302 -19.28247 -18.87256 -18.09051 -17.89266 -17.19983 -16.86703 -16.78039 -16.30187 -15.69884 -15.63020 -15.55468 -15.21209 -14.92947 -14.84216 -14.46232 -14.20529 -13.88123 -13.63374 -13.60785 -13.27538 -13.04107 -12.94825 -12.65990 -12.57749 -12.51593 -12.25600 -12.01661 -11.72630 -11.70934 -11.51022 -11.37084 -10.81579 -10.73187 -10.66346 -10.39866 -10.07005 -9.52698 -8.75852 -8.13494 -5.54410 -1.09690 -0.44061 0.55298 1.29243 1.39276 1.48854 1.50940 1.97925 2.10916 2.44155 2.80989 2.90351 3.08272 3.31497 3.35384 3.43957 3.59825 3.73240 3.90739 3.96053 3.98015 4.12862 4.20363 4.25983 4.30832 4.43989 4.46447 4.59911 4.65075 4.73477 4.80143 4.84468 4.96712 5.00152 5.01261 5.13696 5.21319 5.30509 5.33812 5.34428 5.48464 5.52467 5.78927 5.90451 6.24851 6.38852 6.85078 6.98711 7.57599 7.63590 8.21503 9.04851 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.003812 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.596188 B = 7344.316189 C = 8659.994367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.026 4.026 3 Si 0.951 3.049 4 H -0.286 1.286 5 H -0.316 1.316 6 H -0.251 1.251 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.619 5.619 10 C 0.105 3.895 11 C -0.125 4.125 12 C -0.107 4.107 13 C 0.136 3.864 14 H 0.047 0.953 15 C 0.116 3.884 16 N -0.686 5.686 17 C 0.568 3.432 18 O -0.557 6.557 19 C 0.042 3.958 20 N -0.252 5.252 21 N -0.309 5.309 22 C 0.112 3.888 23 C -0.104 4.104 24 C -0.080 4.080 25 C -0.091 4.091 26 C -0.085 4.085 27 C -0.123 4.123 28 C -0.069 4.069 29 H 0.259 0.741 30 H 0.020 0.980 31 H 0.030 0.970 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.415 0.585 39 H 0.228 0.772 40 H 0.185 0.815 41 H 0.179 0.821 42 H 0.163 0.837 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.606 -19.256 2.914 19.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.222 4.222 3 Si 0.782 3.218 4 H -0.214 1.214 5 H -0.245 1.245 6 H -0.175 1.175 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.345 5.345 10 C -0.019 4.019 11 C -0.163 4.163 12 C -0.145 4.145 13 C 0.030 3.970 14 H 0.065 0.935 15 C -0.009 4.009 16 N -0.337 5.337 17 C 0.352 3.648 18 O -0.437 6.437 19 C -0.117 4.117 20 N -0.087 5.087 21 N -0.141 5.141 22 C -0.061 4.061 23 C -0.111 4.111 24 C -0.099 4.099 25 C -0.110 4.110 26 C -0.104 4.104 27 C -0.143 4.143 28 C -0.077 4.077 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.254 0.746 39 H 0.244 0.756 40 H 0.202 0.798 41 H 0.196 0.804 42 H 0.181 0.819 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.815 -17.991 3.031 18.639 hybrid contribution -0.533 0.479 -0.389 0.815 sum 3.281 -17.512 2.642 18.011 Atomic orbital electron populations 1.69985 1.07571 1.26965 1.54984 1.26054 0.95670 1.01173 0.99329 0.85710 0.79339 0.80144 0.76643 1.21356 1.24521 1.17538 1.18770 0.84352 0.93493 1.40398 0.91174 1.44863 1.04985 1.44630 1.40010 1.22068 0.94053 0.93553 0.92234 1.22757 0.94088 0.97559 1.01885 1.22514 0.94806 0.96263 1.00928 1.21544 0.89923 0.88315 0.97260 0.93487 1.22119 0.84597 0.97758 0.96395 1.46309 1.25992 1.15288 1.46082 1.17708 0.83019 0.82714 0.81373 1.90529 1.65213 1.48608 1.39316 1.23061 0.97283 0.92915 0.98403 1.72763 1.03690 1.28557 1.03689 1.72623 1.03036 1.22091 1.16319 1.25617 0.99803 0.87844 0.92877 1.19267 0.94944 0.98203 0.98687 1.21484 1.00773 0.89135 0.98542 1.21678 0.94200 1.01220 0.93904 1.21684 0.95218 0.96333 0.97178 1.21916 1.01958 0.92737 0.97663 1.18867 0.96147 0.93639 0.99029 0.93194 0.96166 0.95236 0.91670 0.88002 0.87880 0.89428 0.92749 0.89521 0.74564 0.75610 0.79775 0.80361 0.81930 0.83024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.03 13.97 21.65 0.30 -61.73 16 2 C -0.03 -1.59 5.45 84.86 0.46 -1.12 16 3 Si 0.95 48.27 24.79 68.60 1.70 49.97 16 4 H -0.29 -14.12 6.86 99.48 0.68 -13.44 16 5 H -0.32 -16.43 7.11 99.48 0.71 -15.72 16 6 H -0.25 -11.82 7.01 99.48 0.70 -11.12 16 7 C -0.24 -13.79 9.52 84.03 0.80 -12.99 16 8 H 0.07 4.35 5.46 -2.91 -0.02 4.33 16 9 N -0.62 -28.98 2.69 -668.27 -1.80 -30.78 16 10 C 0.10 4.36 6.20 86.85 0.54 4.90 16 11 C -0.12 -3.73 7.09 31.99 0.23 -3.50 16 12 C -0.11 -2.86 6.48 31.78 0.21 -2.65 16 13 C 0.14 4.99 3.31 45.34 0.15 5.14 16 14 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 15 C 0.12 4.23 5.16 86.38 0.45 4.68 16 16 N -0.69 -28.91 4.35 -465.91 -2.03 -30.94 16 17 C 0.57 23.84 7.79 86.81 0.68 24.51 16 18 O -0.56 -23.13 13.57 -3.88 -0.05 -23.19 16 19 C 0.04 1.70 6.90 42.44 0.29 1.99 16 20 N -0.25 -11.11 10.70 -47.74 -0.51 -11.62 16 21 N -0.31 -12.00 11.42 -56.15 -0.64 -12.64 16 22 C 0.11 2.98 11.20 85.22 0.95 3.94 16 23 C -0.10 -2.61 5.75 -21.31 -0.12 -2.74 16 24 C -0.08 -1.14 9.84 22.29 0.22 -0.92 16 25 C -0.09 -1.10 9.95 22.08 0.22 -0.88 16 26 C -0.09 -1.48 9.95 22.11 0.22 -1.26 16 27 C -0.12 -3.42 9.27 22.22 0.21 -3.22 16 28 C -0.07 -2.27 5.77 -21.13 -0.12 -2.39 16 29 H 0.26 16.16 8.31 -92.70 -0.77 15.39 16 30 H 0.02 0.93 3.16 -2.38 -0.01 0.92 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.10 2.36 8.14 -2.38 -0.02 2.35 16 34 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.09 2.07 7.85 -2.39 -0.02 2.05 16 36 H 0.05 2.14 8.12 -2.39 -0.02 2.12 16 37 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.41 19.27 5.65 -92.70 -0.52 18.75 16 39 H 0.23 3.34 8.06 -2.91 -0.02 3.32 16 40 H 0.19 0.96 8.06 -2.91 -0.02 0.94 16 41 H 0.18 0.58 8.06 -2.91 -0.02 0.55 16 42 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.15 4.82 5.12 -2.91 -0.01 4.80 16 Total: -1.00 -83.66 346.83 2.85 -80.81 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.51 Total: 26.64 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 5.37 Total: 13.47 kcal Atomic # 7 Polarization: -143.03 SS G_CDS: -4.67 Total: -147.71 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 1.70 Total: 49.97 kcal Total: -83.66 2.85 -80.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028019878.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.653 kcal (2) G-P(sol) polarization free energy of solvation -83.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds