Wall clock time and date at job start Tue Mar 31 2020 15:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00139 * 2 1 4 4 H 1.48508 * 109.46884 * 269.58773 * 3 2 1 5 5 H 1.48505 * 109.47176 * 29.58374 * 3 2 1 6 6 H 1.48496 * 109.47192 * 149.58810 * 3 2 1 7 7 C 1.38812 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99857 * 343.48040 * 7 2 1 9 9 N 1.36932 * 120.00079 * 163.46908 * 7 2 1 10 10 C 1.47430 * 125.64892 * 325.08057 * 9 7 2 11 11 C 1.54909 * 104.83500 * 155.90131 * 10 9 7 12 12 C 1.55165 * 101.57729 * 37.00912 * 11 10 9 13 13 C 1.47020 * 125.65090 * 145.11496 * 9 7 2 14 14 H 1.09004 * 110.01062 * 300.51818 * 13 9 7 15 15 C 1.53000 * 109.88274 * 61.60769 * 13 9 7 16 16 N 1.46497 * 109.47312 * 297.15088 * 15 13 9 17 17 C 1.34771 * 120.00226 * 173.14321 * 16 15 13 18 18 O 1.21545 * 119.99833 * 0.02562 * 17 16 15 19 19 C 1.47875 * 120.00263 * 179.97438 * 17 16 15 20 20 C 1.38959 * 121.42037 * 353.90379 * 19 17 16 21 21 N 1.32575 * 120.33970 * 180.02562 * 20 19 17 22 22 N 1.28382 * 123.43026 * 359.97438 * 21 20 19 23 23 C 1.33465 * 121.85756 * 0.02562 * 22 21 20 24 24 C 1.40577 * 121.73930 * 179.97438 * 23 22 21 25 25 C 1.36113 * 119.61370 * 180.02562 * 24 23 22 26 26 C 1.39375 * 121.12742 * 359.97438 * 25 24 23 27 27 C 1.36338 * 120.88766 * 0.02562 * 26 25 24 28 28 C 1.39861 * 119.50059 * 359.72017 * 27 26 25 29 29 H 0.97004 * 119.99658 * 0.02562 * 1 2 3 30 30 H 1.09007 * 110.36073 * 274.74027 * 10 9 7 31 31 H 1.08997 * 110.36911 * 37.06015 * 10 9 7 32 32 H 1.08993 * 111.00314 * 278.93991 * 11 10 9 33 33 H 1.09002 * 111.00542 * 155.07897 * 11 10 9 34 34 H 1.09003 * 110.71631 * 206.13602 * 12 11 10 35 35 H 1.08996 * 110.71878 * 82.86669 * 12 11 10 36 36 H 1.09003 * 109.47159 * 57.14811 * 15 13 9 37 37 H 1.08995 * 109.46912 * 177.14862 * 15 13 9 38 38 H 0.97005 * 120.00188 * 353.14774 * 16 15 13 39 39 H 1.07999 * 119.82837 * 0.02562 * 20 19 17 40 40 H 1.08008 * 120.18982 * 0.04628 * 24 23 22 41 41 H 1.07998 * 119.43646 * 180.02562 * 25 24 23 42 42 H 1.07995 * 119.55501 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.25122 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5064 2.0413 -1.4001 5 1 1.4433 2.6552 0.6912 6 1 3.5433 1.4426 0.7087 7 6 2.0102 -1.2022 0.0005 8 1 1.5036 -2.1181 0.2669 9 7 3.3371 -1.2269 -0.3369 10 6 3.9832 -0.3681 -1.3462 11 6 5.4747 -0.3207 -0.9304 12 6 5.7016 -1.7679 -0.4190 13 6 4.3533 -2.1147 0.2468 14 1 4.4181 -1.9510 1.3226 15 6 3.9934 -3.5745 -0.0363 16 7 2.7205 -3.8984 0.6126 17 6 2.1333 -5.0904 0.3874 18 8 2.6601 -5.8969 -0.3538 19 6 0.8488 -5.4175 1.0428 20 6 0.2837 -4.5733 1.9910 21 7 -0.8689 -4.8880 2.5656 22 7 -1.5243 -5.9586 2.2966 23 6 -1.0848 -6.8480 1.4038 24 6 -1.8043 -8.0198 1.1115 25 6 -1.3155 -8.8978 0.1935 26 6 -0.1112 -8.6558 -0.4650 27 6 0.6136 -7.5302 -0.2072 28 6 0.1382 -6.6038 0.7266 29 1 -0.4850 0.8401 -0.0004 30 1 3.8798 -0.8062 -2.3390 31 1 3.5515 0.6325 -1.3253 32 1 5.6350 0.4050 -0.1331 33 1 6.1125 -0.1047 -1.7875 34 1 6.5107 -1.7966 0.3109 35 1 5.9063 -2.4429 -1.2500 36 1 3.9010 -3.7239 -1.1121 37 1 4.7763 -4.2242 0.3549 38 1 2.3002 -3.2549 1.2044 39 1 0.7860 -3.6562 2.2611 40 1 -2.7396 -8.2221 1.6124 41 1 -1.8708 -9.7970 -0.0292 42 1 0.2528 -9.3695 -1.1892 43 1 1.5453 -7.3527 -0.7237 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028163140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:38 Heat of formation + Delta-G solvation = 85.289582 kcal Electronic energy + Delta-G solvation = -27568.336385 eV Core-core repulsion = 23808.378755 eV Total energy + Delta-G solvation = -3759.957630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.43043 -39.38157 -38.00742 -37.81769 -34.37415 -33.62798 -32.75450 -31.60594 -30.61036 -30.08364 -29.36039 -26.16672 -24.88981 -24.32015 -23.84306 -22.55413 -21.19485 -20.39377 -19.74280 -18.59584 -18.10971 -17.84432 -16.62172 -16.34917 -15.63583 -15.50474 -15.36371 -15.12709 -14.79800 -14.54620 -14.39262 -13.69531 -13.62285 -13.28417 -13.12398 -12.62933 -12.51190 -12.46904 -12.38221 -12.08372 -11.92477 -11.44910 -11.38650 -11.06265 -10.88209 -10.80426 -10.63194 -10.57562 -10.30916 -10.24921 -9.91985 -9.61104 -9.40017 -9.28041 -8.76715 -8.62728 -8.35959 -6.98511 -6.11401 -3.58022 -0.26112 0.63823 1.57944 2.68862 3.12703 3.22841 3.31571 3.37835 3.41991 3.96383 4.01200 4.31711 4.39257 4.45918 4.56484 4.71651 4.81199 4.92168 5.01662 5.05564 5.19263 5.22793 5.34461 5.40599 5.44425 5.57153 5.71735 5.78490 5.81258 5.92617 5.94854 6.01357 6.11015 6.15477 6.18187 6.25177 6.28029 6.31568 6.49101 6.62417 6.72466 6.76425 6.81364 7.70640 7.77817 8.16495 8.36309 8.63830 8.65208 9.51026 10.09046 11.02315 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016005 B = 0.003838 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.018373 B = 7293.974628 C = 8495.722890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.037 3.963 3 Si 0.895 3.105 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.265 4.265 8 H 0.088 0.912 9 N -0.601 5.601 10 C 0.114 3.886 11 C -0.136 4.136 12 C -0.120 4.120 13 C 0.142 3.858 14 H 0.050 0.950 15 C 0.114 3.886 16 N -0.691 5.691 17 C 0.561 3.439 18 O -0.543 6.543 19 C -0.103 4.103 20 C 0.060 3.940 21 N -0.217 5.217 22 N -0.192 5.192 23 C 0.056 3.944 24 C -0.081 4.081 25 C -0.101 4.101 26 C -0.101 4.101 27 C -0.103 4.103 28 C -0.025 4.025 29 H 0.266 0.734 30 H 0.032 0.968 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.414 0.586 39 H 0.180 0.820 40 H 0.143 0.857 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.909 -13.068 0.789 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.165 4.165 3 Si 0.727 3.273 4 H -0.214 1.214 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.392 4.392 8 H 0.105 0.895 9 N -0.327 5.327 10 C -0.011 4.011 11 C -0.174 4.174 12 C -0.159 4.159 13 C 0.034 3.966 14 H 0.068 0.932 15 C -0.011 4.011 16 N -0.343 5.343 17 C 0.346 3.654 18 O -0.423 6.423 19 C -0.119 4.119 20 C -0.093 4.093 21 N -0.069 5.069 22 N -0.047 5.047 23 C -0.073 4.073 24 C -0.102 4.102 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.121 4.121 28 C -0.034 4.034 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.255 0.745 39 H 0.197 0.803 40 H 0.161 0.839 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.948 -13.015 1.370 13.669 hybrid contribution 1.118 1.094 -0.873 1.791 sum 5.066 -11.921 0.498 12.962 Atomic orbital electron populations 1.69793 1.05773 1.27112 1.51118 1.25406 0.95168 0.98071 0.97825 0.86687 0.79694 0.83833 0.77102 1.21414 1.23192 1.19489 1.18574 0.81873 0.93846 1.44915 0.89504 1.44679 1.04882 1.42564 1.40626 1.21962 0.90808 0.95360 0.92927 1.22779 0.97506 0.96613 1.00523 1.22483 0.96268 0.97000 1.00132 1.21289 0.89184 0.89088 0.96991 0.93214 1.22072 0.83509 0.97394 0.98124 1.46194 1.24115 1.16118 1.47879 1.17735 0.83507 0.82644 0.81494 1.90560 1.64866 1.48602 1.38270 1.21201 0.96921 0.95463 0.98275 1.24429 0.93113 0.99259 0.92453 1.73050 1.04858 1.09301 1.19709 1.73605 1.23800 0.97270 1.10001 1.20384 0.93725 0.97125 0.96113 1.20748 0.99841 0.91588 0.98018 1.21060 0.96079 0.99388 0.95581 1.21233 0.94396 0.97472 0.98971 1.21945 1.01845 0.92323 0.95948 1.18688 0.93993 0.94322 0.96441 0.92358 0.95040 0.93837 0.91544 0.91470 0.91284 0.91200 0.91154 0.92296 0.74487 0.80313 0.83919 0.84799 0.84919 0.81101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.02 13.97 55.49 0.78 -25.25 16 2 C 0.04 1.00 5.46 -17.43 -0.10 0.91 16 3 Si 0.90 21.47 24.86 -169.99 -4.23 17.25 16 4 H -0.29 -6.79 6.65 56.52 0.38 -6.41 16 5 H -0.30 -7.49 7.11 56.52 0.40 -7.08 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.26 -6.66 9.52 -15.06 -0.14 -6.80 16 8 H 0.09 2.23 5.40 -52.48 -0.28 1.94 16 9 N -0.60 -12.94 2.70 -162.57 -0.44 -13.38 16 10 C 0.11 2.28 6.26 -2.53 -0.02 2.26 16 11 C -0.14 -2.12 7.09 -24.58 -0.17 -2.30 16 12 C -0.12 -1.69 6.48 -24.89 -0.16 -1.85 16 13 C 0.14 2.43 3.32 -66.96 -0.22 2.21 16 14 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 15 C 0.11 1.88 5.17 -4.04 -0.02 1.86 16 16 N -0.69 -11.98 4.31 -61.25 -0.26 -12.25 16 17 C 0.56 9.95 7.76 -12.32 -0.10 9.86 16 18 O -0.54 -10.20 13.64 5.33 0.07 -10.13 16 19 C -0.10 -1.76 5.95 -104.30 -0.62 -2.38 16 20 C 0.06 1.02 10.80 -16.96 -0.18 0.84 16 21 N -0.22 -3.94 11.47 30.73 0.35 -3.59 16 22 N -0.19 -3.31 11.52 32.21 0.37 -2.94 16 23 C 0.06 0.87 6.69 -84.87 -0.57 0.30 16 24 C -0.08 -0.95 10.01 -39.46 -0.40 -1.35 16 25 C -0.10 -0.98 9.94 -39.92 -0.40 -1.37 16 26 C -0.10 -1.09 9.96 -39.84 -0.40 -1.49 16 27 C -0.10 -1.45 9.28 -39.66 -0.37 -1.82 16 28 C -0.03 -0.41 5.77 -106.50 -0.61 -1.02 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.96 2.90 -51.93 -0.15 0.81 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.90 7.85 -51.93 -0.41 0.49 16 36 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.41 7.32 4.38 -40.82 -0.18 7.14 16 39 H 0.18 2.82 6.56 -52.49 -0.34 2.48 16 40 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 41 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.17 2.61 5.14 -52.49 -0.27 2.34 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -31.25 344.45 -7.66 -38.90 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -5.02 Total: 8.32 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -4.47 Total: -2.14 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.80 Total: -57.39 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.07 Total: -10.13 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.23 Total: 17.25 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.25 -7.66 -38.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028163140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.193 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds