Wall clock time and date at job start Tue Mar 31 2020 15:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00139 * 2 1 4 4 H 1.48508 * 109.46884 * 269.58773 * 3 2 1 5 5 H 1.48505 * 109.47176 * 29.58374 * 3 2 1 6 6 H 1.48496 * 109.47192 * 149.58810 * 3 2 1 7 7 C 1.38812 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99857 * 343.48040 * 7 2 1 9 9 N 1.36932 * 120.00079 * 163.46908 * 7 2 1 10 10 C 1.47430 * 125.64892 * 325.08057 * 9 7 2 11 11 C 1.54909 * 104.83500 * 155.90131 * 10 9 7 12 12 C 1.55165 * 101.57729 * 37.00912 * 11 10 9 13 13 C 1.47020 * 125.65090 * 145.11496 * 9 7 2 14 14 H 1.09004 * 110.01062 * 300.51818 * 13 9 7 15 15 C 1.53000 * 109.88274 * 61.60769 * 13 9 7 16 16 N 1.46497 * 109.47312 * 297.15088 * 15 13 9 17 17 C 1.34771 * 120.00226 * 173.14321 * 16 15 13 18 18 O 1.21545 * 119.99833 * 0.02562 * 17 16 15 19 19 C 1.47875 * 120.00263 * 179.97438 * 17 16 15 20 20 C 1.38959 * 121.42037 * 353.90379 * 19 17 16 21 21 N 1.32575 * 120.33970 * 180.02562 * 20 19 17 22 22 N 1.28382 * 123.43026 * 359.97438 * 21 20 19 23 23 C 1.33465 * 121.85756 * 0.02562 * 22 21 20 24 24 C 1.40577 * 121.73930 * 179.97438 * 23 22 21 25 25 C 1.36113 * 119.61370 * 180.02562 * 24 23 22 26 26 C 1.39375 * 121.12742 * 359.97438 * 25 24 23 27 27 C 1.36338 * 120.88766 * 0.02562 * 26 25 24 28 28 C 1.39861 * 119.50059 * 359.72017 * 27 26 25 29 29 H 0.97004 * 119.99658 * 0.02562 * 1 2 3 30 30 H 1.09007 * 110.36073 * 274.74027 * 10 9 7 31 31 H 1.08997 * 110.36911 * 37.06015 * 10 9 7 32 32 H 1.08993 * 111.00314 * 278.93991 * 11 10 9 33 33 H 1.09002 * 111.00542 * 155.07897 * 11 10 9 34 34 H 1.09003 * 110.71631 * 206.13602 * 12 11 10 35 35 H 1.08996 * 110.71878 * 82.86669 * 12 11 10 36 36 H 1.09003 * 109.47159 * 57.14811 * 15 13 9 37 37 H 1.08995 * 109.46912 * 177.14862 * 15 13 9 38 38 H 0.97005 * 120.00188 * 353.14774 * 16 15 13 39 39 H 1.07999 * 119.82837 * 0.02562 * 20 19 17 40 40 H 1.08008 * 120.18982 * 0.04628 * 24 23 22 41 41 H 1.07998 * 119.43646 * 180.02562 * 25 24 23 42 42 H 1.07995 * 119.55501 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.25122 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5064 2.0413 -1.4001 5 1 1.4433 2.6552 0.6912 6 1 3.5433 1.4426 0.7087 7 6 2.0102 -1.2022 0.0005 8 1 1.5036 -2.1181 0.2669 9 7 3.3371 -1.2269 -0.3369 10 6 3.9832 -0.3681 -1.3462 11 6 5.4747 -0.3207 -0.9304 12 6 5.7016 -1.7679 -0.4190 13 6 4.3533 -2.1147 0.2468 14 1 4.4181 -1.9510 1.3226 15 6 3.9934 -3.5745 -0.0363 16 7 2.7205 -3.8984 0.6126 17 6 2.1333 -5.0904 0.3874 18 8 2.6601 -5.8969 -0.3538 19 6 0.8488 -5.4175 1.0428 20 6 0.2837 -4.5733 1.9910 21 7 -0.8689 -4.8880 2.5656 22 7 -1.5243 -5.9586 2.2966 23 6 -1.0848 -6.8480 1.4038 24 6 -1.8043 -8.0198 1.1115 25 6 -1.3155 -8.8978 0.1935 26 6 -0.1112 -8.6558 -0.4650 27 6 0.6136 -7.5302 -0.2072 28 6 0.1382 -6.6038 0.7266 29 1 -0.4850 0.8401 -0.0004 30 1 3.8798 -0.8062 -2.3390 31 1 3.5515 0.6325 -1.3253 32 1 5.6350 0.4050 -0.1331 33 1 6.1125 -0.1047 -1.7875 34 1 6.5107 -1.7966 0.3109 35 1 5.9063 -2.4429 -1.2500 36 1 3.9010 -3.7239 -1.1121 37 1 4.7763 -4.2242 0.3549 38 1 2.3002 -3.2549 1.2044 39 1 0.7860 -3.6562 2.2611 40 1 -2.7396 -8.2221 1.6124 41 1 -1.8708 -9.7970 -0.0292 42 1 0.2528 -9.3695 -1.1892 43 1 1.5453 -7.3527 -0.7237 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028163140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:37 Heat of formation + Delta-G solvation = 64.415365 kcal Electronic energy + Delta-G solvation = -27569.241559 eV Core-core repulsion = 23808.378755 eV Total energy + Delta-G solvation = -3760.862804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.63295 -40.75789 -39.44819 -38.89973 -35.76515 -34.87328 -34.61440 -32.72412 -31.79099 -31.73447 -30.67382 -27.44673 -26.42809 -25.47809 -25.35920 -23.72476 -22.56347 -21.77506 -21.15793 -19.73502 -19.45509 -19.17490 -18.19438 -17.93985 -17.00158 -16.73307 -16.68530 -16.31760 -16.16407 -15.86142 -15.62031 -15.24003 -14.88170 -14.83203 -14.43674 -14.24125 -13.91003 -13.63691 -13.52681 -13.44356 -13.05345 -12.97164 -12.88198 -12.66639 -12.29150 -12.17278 -11.97871 -11.86301 -11.75082 -11.52929 -11.50237 -11.34529 -10.66512 -10.58972 -10.47047 -10.10605 -9.46076 -8.78618 -8.17244 -5.58446 -1.44932 -0.49617 0.50045 1.29787 1.39914 1.46676 1.50644 1.87950 2.03474 2.42379 2.80546 2.84158 3.04989 3.12025 3.28636 3.32160 3.36245 3.68469 3.89310 3.90715 3.97450 4.07350 4.13755 4.20375 4.29967 4.38453 4.47083 4.47676 4.65947 4.72355 4.74937 4.84456 4.94371 4.98834 5.01471 5.07140 5.14724 5.25732 5.28328 5.32074 5.46426 5.48669 5.72674 5.85891 6.16945 6.34562 6.80359 6.96936 7.37229 7.54238 8.19967 9.00026 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016005 B = 0.003838 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.018373 B = 7293.974628 C = 8495.722890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.023 4.023 3 Si 0.951 3.049 4 H -0.285 1.285 5 H -0.318 1.318 6 H -0.254 1.254 7 C -0.241 4.241 8 H 0.074 0.926 9 N -0.619 5.619 10 C 0.100 3.900 11 C -0.126 4.126 12 C -0.109 4.109 13 C 0.137 3.863 14 H 0.054 0.946 15 C 0.118 3.882 16 N -0.694 5.694 17 C 0.561 3.439 18 O -0.556 6.556 19 C -0.123 4.123 20 C 0.052 3.948 21 N -0.250 5.250 22 N -0.205 5.205 23 C 0.039 3.961 24 C -0.086 4.086 25 C -0.081 4.081 26 C -0.070 4.070 27 C -0.136 4.136 28 C -0.037 4.037 29 H 0.260 0.740 30 H 0.029 0.971 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.411 0.589 39 H 0.180 0.820 40 H 0.168 0.832 41 H 0.186 0.814 42 H 0.173 0.827 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.765 -15.709 -0.097 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.220 4.220 3 Si 0.782 3.218 4 H -0.213 1.213 5 H -0.248 1.248 6 H -0.178 1.178 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.345 5.345 10 C -0.024 4.024 11 C -0.164 4.164 12 C -0.147 4.147 13 C 0.031 3.969 14 H 0.072 0.928 15 C -0.006 4.006 16 N -0.346 5.346 17 C 0.347 3.653 18 O -0.437 6.437 19 C -0.139 4.139 20 C -0.100 4.100 21 N -0.101 5.101 22 N -0.059 5.059 23 C -0.091 4.091 24 C -0.106 4.106 25 C -0.101 4.101 26 C -0.090 4.090 27 C -0.155 4.155 28 C -0.047 4.047 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.251 0.749 39 H 0.197 0.803 40 H 0.185 0.815 41 H 0.203 0.797 42 H 0.190 0.810 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.868 -15.658 0.492 16.729 hybrid contribution 0.514 1.615 -0.710 1.837 sum 6.382 -14.043 -0.217 15.427 Atomic orbital electron populations 1.69931 1.07375 1.27194 1.54929 1.26001 0.95622 1.01082 0.99282 0.85775 0.78816 0.80254 0.76937 1.21331 1.24786 1.17801 1.18711 0.83688 0.93115 1.41467 0.90900 1.44858 1.04518 1.43456 1.41663 1.22128 0.93884 0.93728 0.92624 1.22751 0.94283 0.97633 1.01730 1.22519 0.94915 0.96032 1.01215 1.21545 0.89858 0.88157 0.97372 0.92842 1.22077 0.83797 0.97604 0.97146 1.46262 1.24530 1.15963 1.47826 1.17837 0.83663 0.82530 0.81247 1.90543 1.65322 1.48964 1.38878 1.21208 0.97150 0.96534 0.98973 1.24398 0.93201 0.99485 0.92942 1.72959 1.05596 1.10417 1.21151 1.73467 1.24105 0.97482 1.10833 1.20863 0.94143 0.98183 0.95958 1.21187 1.00482 0.90320 0.98639 1.21623 0.95241 1.00028 0.93163 1.21775 0.93547 0.95952 0.97716 1.21900 1.02616 0.93964 0.96972 1.18971 0.94283 0.94368 0.97031 0.93059 0.95326 0.95944 0.91651 0.88311 0.87921 0.89632 0.92840 0.89611 0.74937 0.80336 0.81470 0.79704 0.80993 0.82539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.97 13.97 21.65 0.30 -57.66 16 2 C -0.02 -1.31 5.46 84.86 0.46 -0.84 16 3 Si 0.95 45.59 24.86 68.60 1.71 47.29 16 4 H -0.29 -13.42 6.65 99.48 0.66 -12.75 16 5 H -0.32 -15.83 7.11 99.48 0.71 -15.12 16 6 H -0.25 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.24 -12.46 9.52 84.03 0.80 -11.66 16 8 H 0.07 3.93 5.40 -2.91 -0.02 3.92 16 9 N -0.62 -26.38 2.70 -668.25 -1.80 -28.18 16 10 C 0.10 3.90 6.26 86.85 0.54 4.44 16 11 C -0.13 -3.48 7.09 31.99 0.23 -3.26 16 12 C -0.11 -2.62 6.48 31.78 0.21 -2.41 16 13 C 0.14 4.45 3.32 45.34 0.15 4.60 16 14 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 15 C 0.12 3.80 5.17 86.38 0.45 4.25 16 16 N -0.69 -24.76 4.31 -465.96 -2.01 -26.77 16 17 C 0.56 20.68 7.76 86.80 0.67 21.35 16 18 O -0.56 -21.29 13.64 -3.86 -0.05 -21.34 16 19 C -0.12 -4.47 5.95 -19.66 -0.12 -4.59 16 20 C 0.05 1.94 10.80 84.75 0.92 2.86 16 21 N -0.25 -9.68 11.47 -56.68 -0.65 -10.33 16 22 N -0.20 -7.33 11.52 -51.99 -0.60 -7.93 16 23 C 0.04 1.21 6.69 40.38 0.27 1.48 16 24 C -0.09 -1.78 10.01 22.35 0.22 -1.56 16 25 C -0.08 -1.18 9.94 22.05 0.22 -0.96 16 26 C -0.07 -1.25 9.96 22.10 0.22 -1.03 16 27 C -0.14 -3.74 9.28 22.22 0.21 -3.54 16 28 C -0.04 -1.22 5.77 -21.08 -0.12 -1.35 16 29 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 30 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.02 0.98 2.90 -2.39 -0.01 0.97 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.09 1.84 7.85 -2.39 -0.02 1.82 16 36 H 0.05 1.90 8.11 -2.39 -0.02 1.88 16 37 H 0.09 2.30 8.14 -2.39 -0.02 2.29 16 38 H 0.41 15.27 4.38 -92.70 -0.41 14.87 16 39 H 0.18 6.29 6.56 -2.91 -0.02 6.27 16 40 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 41 H 0.19 0.96 8.06 -2.91 -0.02 0.93 16 42 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 43 H 0.16 4.78 5.14 -2.91 -0.01 4.77 16 Total: -1.00 -73.16 344.45 2.84 -70.32 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.62 Total: 26.80 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 5.33 Total: 7.79 kcal Atomic # 7 Polarization: -126.11 SS G_CDS: -4.76 Total: -130.87 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.71 Total: 47.29 kcal Total: -73.16 2.84 -70.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028163140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.736 kcal (2) G-P(sol) polarization free energy of solvation -73.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds