Wall clock time and date at job start Tue Mar 31 2020 14:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86809 * 119.99678 * 2 1 4 4 H 1.48504 * 109.46887 * 239.99986 * 3 2 1 5 5 H 1.48498 * 109.46931 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47185 * 120.00237 * 3 2 1 7 7 C 1.38806 * 120.00705 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00428 * 180.02562 * 7 2 1 9 9 N 1.36947 * 119.99537 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64761 * 345.82586 * 9 7 2 11 11 C 1.54907 * 104.83034 * 204.15028 * 10 9 7 12 12 C 1.55158 * 101.58179 * 322.98843 * 11 10 9 13 13 C 1.47016 * 125.64758 * 165.84773 * 9 7 2 14 14 H 1.09002 * 110.01038 * 59.42772 * 13 9 7 15 15 C 1.52999 * 109.88602 * 298.34291 * 13 9 7 16 16 N 1.46498 * 109.47467 * 176.74302 * 15 13 9 17 17 C 1.34778 * 119.99947 * 174.96556 * 16 15 13 18 18 O 1.21551 * 120.00169 * 0.02562 * 17 16 15 19 19 C 1.47869 * 119.99669 * 179.97438 * 17 16 15 20 20 C 1.40614 * 119.75501 * 359.72715 * 19 17 16 21 21 C 1.35734 * 120.83141 * 179.73664 * 20 19 17 22 22 C 1.40704 * 120.08239 * 0.50715 * 21 20 19 23 23 N 1.33802 * 120.85923 * 179.75096 * 22 21 20 24 24 C 1.31332 * 119.76336 * 180.02562 * 23 22 21 25 25 C 1.39759 * 120.70981 * 359.97438 * 24 23 22 26 26 N 1.31273 * 120.67513 * 359.97438 * 25 24 23 27 27 C 1.33827 * 119.73703 * 0.02562 * 26 25 24 28 28 C 1.38413 * 119.75244 * 180.02562 * 19 17 16 29 29 H 0.96998 * 120.00017 * 359.97438 * 1 2 3 30 30 H 1.08996 * 110.36610 * 85.30796 * 10 9 7 31 31 H 1.08994 * 110.46074 * 323.03310 * 10 9 7 32 32 H 1.09000 * 111.00458 * 204.91669 * 11 10 9 33 33 H 1.08998 * 111.01048 * 81.06413 * 11 10 9 34 34 H 1.08998 * 110.72199 * 277.14064 * 12 11 10 35 35 H 1.09001 * 110.72085 * 153.86308 * 12 11 10 36 36 H 1.08998 * 109.47181 * 56.73620 * 15 13 9 37 37 H 1.09005 * 109.46502 * 296.73972 * 15 13 9 38 38 H 0.97005 * 119.99979 * 354.96175 * 16 15 13 39 39 H 1.08001 * 119.58647 * 0.02562 * 20 19 17 40 40 H 1.07995 * 119.95873 * 180.30334 * 21 20 19 41 41 H 1.07993 * 119.63981 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.66053 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.25040 * 359.97438 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1040 1.6966 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1096 -2.5512 0.2956 11 6 -0.2521 -4.0175 0.7746 12 6 0.7659 -4.7451 -0.1429 13 6 1.9005 -3.7094 -0.2898 14 1 2.6999 -3.9325 0.4167 15 6 2.4471 -3.7356 -1.7186 16 7 3.0864 -5.0288 -1.9734 17 6 3.5524 -5.3194 -3.2042 18 8 3.4427 -4.5082 -4.1028 19 6 4.1982 -6.6245 -3.4611 20 6 4.3286 -7.5564 -2.4162 21 6 4.9129 -8.7629 -2.6289 22 6 5.4075 -9.0919 -3.9044 23 7 5.9907 -10.2748 -4.1302 24 6 6.4452 -10.5593 -5.3291 25 6 6.3262 -9.6393 -6.3744 26 7 5.7572 -8.4727 -6.1783 27 6 5.2861 -8.1594 -4.9654 28 6 4.6755 -6.9174 -4.7269 29 1 -0.4850 0.8400 0.0004 30 1 -0.7023 -2.3867 -0.6043 31 1 -0.4179 -1.8634 1.0829 32 1 -1.2636 -4.3870 0.6060 33 1 0.0280 -4.1150 1.8234 34 1 0.3202 -4.9691 -1.1120 35 1 1.1330 -5.6543 0.3334 36 1 3.1793 -2.9376 -1.8422 37 1 1.6284 -3.5899 -2.4234 38 1 3.1744 -5.6760 -1.2562 39 1 3.9549 -7.3108 -1.4331 40 1 5.0012 -9.4699 -1.8173 41 1 6.9152 -11.5148 -5.5092 42 1 6.7056 -9.8911 -7.3537 43 1 4.5773 -6.1970 -5.5256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028307555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:12 Heat of formation + Delta-G solvation = 60.751799 kcal Electronic energy + Delta-G solvation = -26345.204732 eV Core-core repulsion = 22584.183064 eV Total energy + Delta-G solvation = -3761.021668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.77458 -39.81812 -37.83719 -37.14028 -35.18717 -34.42633 -32.53120 -31.46673 -30.93455 -29.67984 -28.72676 -26.15756 -24.96599 -24.74601 -23.79813 -22.52514 -21.27983 -20.25602 -19.73618 -18.86887 -18.57346 -17.43814 -16.89883 -16.46973 -15.84420 -15.53943 -15.05645 -15.01316 -14.85002 -14.56968 -14.38307 -14.12346 -13.89504 -13.52426 -13.17292 -12.80124 -12.22361 -12.13941 -12.09606 -12.05973 -12.05637 -11.90322 -11.75078 -11.35061 -10.97449 -10.79306 -10.29822 -10.16537 -10.05387 -9.89933 -9.81813 -9.70735 -9.52432 -9.40067 -8.99097 -8.73443 -8.60413 -6.87793 -5.79102 -3.16201 -0.28699 0.04084 1.47807 2.06413 3.14735 3.16329 3.39624 3.44450 3.45161 3.60717 3.70772 3.76571 3.84910 4.36822 4.43700 4.48436 4.56946 4.66427 4.78386 4.98498 5.26763 5.33368 5.35605 5.44320 5.51149 5.58793 5.65729 5.73572 5.76984 5.87514 6.00594 6.08363 6.18880 6.20107 6.41630 6.49695 6.54379 6.64194 6.75265 6.83280 7.00100 7.29377 7.48764 7.57472 7.63812 7.76610 8.22272 8.30554 9.14578 9.75150 10.41857 11.32585 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022360 B = 0.002437 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.922427 B =11486.316243 C =12267.169245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.107 3.893 16 N -0.713 5.713 17 C 0.549 3.451 18 O -0.531 6.531 19 C -0.107 4.107 20 C -0.072 4.072 21 C -0.087 4.087 22 C 0.090 3.910 23 N -0.428 5.428 24 C 0.082 3.918 25 C 0.073 3.927 26 N -0.416 5.416 27 C 0.070 3.930 28 C -0.017 4.017 29 H 0.255 0.745 30 H 0.026 0.974 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.395 0.605 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.177 0.823 42 H 0.177 0.823 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.693 -22.694 -6.217 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.365 4.365 8 H 0.093 0.907 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.017 4.017 16 N -0.364 5.364 17 C 0.334 3.666 18 O -0.408 6.408 19 C -0.112 4.112 20 C -0.092 4.092 21 C -0.107 4.107 22 C -0.033 4.033 23 N -0.142 5.142 24 C -0.094 4.094 25 C -0.103 4.103 26 N -0.130 5.130 27 C -0.054 4.054 28 C -0.037 4.037 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.230 0.770 39 H 0.159 0.841 40 H 0.164 0.836 41 H 0.194 0.806 42 H 0.194 0.806 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.390 -21.632 -6.661 24.505 hybrid contribution 0.586 0.464 0.131 0.758 sum 9.976 -21.169 -6.530 24.296 Atomic orbital electron populations 1.69924 1.05026 1.25491 1.55658 1.24913 0.95683 0.97897 1.01279 0.86224 0.78606 0.83035 0.78051 1.20911 1.21538 1.21049 1.18937 0.90379 0.82167 1.44971 0.90657 1.44473 1.06128 1.00821 1.79782 1.21467 0.84693 0.90250 0.98900 1.23008 0.97533 0.99595 0.98601 1.22621 0.97131 0.96940 0.99817 1.21134 0.94517 0.88192 0.91860 0.94443 1.22349 0.97343 0.82414 0.99633 1.46075 1.59627 1.20109 1.10626 1.18101 0.79099 0.86026 0.83358 1.90816 1.56901 1.49175 1.43914 1.20176 1.01257 0.95582 0.94214 1.21109 0.96550 0.92581 0.99001 1.20674 0.97803 0.97107 0.95067 1.19675 0.97557 0.90887 0.95223 1.68733 1.06592 1.16670 1.22168 1.24154 0.95523 1.00763 0.88950 1.24117 0.95363 0.89742 1.01129 1.68693 1.05746 1.17881 1.20667 1.19459 0.99850 0.95813 0.90236 1.21262 0.91704 0.93866 0.96891 0.93501 0.95608 0.90834 0.92314 0.92271 0.91766 0.92386 0.91151 0.91267 0.76999 0.84076 0.83604 0.80643 0.80604 0.82670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.38 10.56 55.49 0.59 -25.80 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.10 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.37 9.75 -15.06 -0.15 -6.52 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.56 16 9 N -0.59 -14.26 3.13 -162.58 -0.51 -14.77 16 10 C 0.17 4.01 5.42 -2.53 -0.01 4.00 16 11 C -0.15 -2.64 7.08 -24.58 -0.17 -2.81 16 12 C -0.13 -2.02 6.14 -24.90 -0.15 -2.17 16 13 C 0.15 2.87 3.21 -66.96 -0.21 2.66 16 14 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 15 C 0.11 2.00 5.08 -4.04 -0.02 1.98 16 16 N -0.71 -10.19 5.29 -61.24 -0.32 -10.51 16 17 C 0.55 8.46 7.77 -12.32 -0.10 8.36 16 18 O -0.53 -10.44 16.30 5.32 0.09 -10.35 16 19 C -0.11 -1.30 5.87 -104.99 -0.62 -1.92 16 20 C -0.07 -0.66 9.44 -39.58 -0.37 -1.03 16 21 C -0.09 -0.79 9.95 -39.55 -0.39 -1.19 16 22 C 0.09 0.98 6.59 -84.72 -0.56 0.42 16 23 N -0.43 -4.18 10.46 -10.74 -0.11 -4.29 16 24 C 0.08 0.55 11.22 -17.20 -0.19 0.35 16 25 C 0.07 0.52 11.21 -17.22 -0.19 0.32 16 26 N -0.42 -4.57 10.46 -10.81 -0.11 -4.68 16 27 C 0.07 0.83 6.58 -84.81 -0.56 0.27 16 28 C -0.02 -0.21 9.56 -38.69 -0.37 -0.58 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 31 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.02 7.80 -51.93 -0.40 0.61 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.49 7.90 -51.93 -0.41 1.08 16 37 H 0.07 1.45 8.06 -51.93 -0.42 1.03 16 38 H 0.40 4.27 6.35 -40.82 -0.26 4.01 16 39 H 0.14 0.91 6.35 -52.49 -0.33 0.58 16 40 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.18 0.44 8.06 -52.49 -0.42 0.01 16 42 H 0.18 0.54 8.06 -52.49 -0.42 0.11 16 43 H 0.16 2.06 7.61 -52.49 -0.40 1.66 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -34.14 359.30 -9.67 -43.82 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.51 Total: 2.22 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -4.17 Total: 2.04 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.47 Total: -60.05 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.14 -9.67 -43.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028307555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.568 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds