Wall clock time and date at job start Tue Mar 31 2020 14:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86809 * 119.99678 * 2 1 4 4 H 1.48504 * 109.46887 * 239.99986 * 3 2 1 5 5 H 1.48498 * 109.46931 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47185 * 120.00237 * 3 2 1 7 7 C 1.38806 * 120.00705 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00428 * 180.02562 * 7 2 1 9 9 N 1.36947 * 119.99537 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64761 * 345.82586 * 9 7 2 11 11 C 1.54907 * 104.83034 * 204.15028 * 10 9 7 12 12 C 1.55158 * 101.58179 * 322.98843 * 11 10 9 13 13 C 1.47016 * 125.64758 * 165.84773 * 9 7 2 14 14 H 1.09002 * 110.01038 * 59.42772 * 13 9 7 15 15 C 1.52999 * 109.88602 * 298.34291 * 13 9 7 16 16 N 1.46498 * 109.47467 * 176.74302 * 15 13 9 17 17 C 1.34778 * 119.99947 * 174.96556 * 16 15 13 18 18 O 1.21551 * 120.00169 * 0.02562 * 17 16 15 19 19 C 1.47869 * 119.99669 * 179.97438 * 17 16 15 20 20 C 1.40614 * 119.75501 * 359.72715 * 19 17 16 21 21 C 1.35734 * 120.83141 * 179.73664 * 20 19 17 22 22 C 1.40704 * 120.08239 * 0.50715 * 21 20 19 23 23 N 1.33802 * 120.85923 * 179.75096 * 22 21 20 24 24 C 1.31332 * 119.76336 * 180.02562 * 23 22 21 25 25 C 1.39759 * 120.70981 * 359.97438 * 24 23 22 26 26 N 1.31273 * 120.67513 * 359.97438 * 25 24 23 27 27 C 1.33827 * 119.73703 * 0.02562 * 26 25 24 28 28 C 1.38413 * 119.75244 * 180.02562 * 19 17 16 29 29 H 0.96998 * 120.00017 * 359.97438 * 1 2 3 30 30 H 1.08996 * 110.36610 * 85.30796 * 10 9 7 31 31 H 1.08994 * 110.46074 * 323.03310 * 10 9 7 32 32 H 1.09000 * 111.00458 * 204.91669 * 11 10 9 33 33 H 1.08998 * 111.01048 * 81.06413 * 11 10 9 34 34 H 1.08998 * 110.72199 * 277.14064 * 12 11 10 35 35 H 1.09001 * 110.72085 * 153.86308 * 12 11 10 36 36 H 1.08998 * 109.47181 * 56.73620 * 15 13 9 37 37 H 1.09005 * 109.46502 * 296.73972 * 15 13 9 38 38 H 0.97005 * 119.99979 * 354.96175 * 16 15 13 39 39 H 1.08001 * 119.58647 * 0.02562 * 20 19 17 40 40 H 1.07995 * 119.95873 * 180.30334 * 21 20 19 41 41 H 1.07993 * 119.63981 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.66053 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.25040 * 359.97438 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1040 1.6966 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1096 -2.5512 0.2956 11 6 -0.2521 -4.0175 0.7746 12 6 0.7659 -4.7451 -0.1429 13 6 1.9005 -3.7094 -0.2898 14 1 2.6999 -3.9325 0.4167 15 6 2.4471 -3.7356 -1.7186 16 7 3.0864 -5.0288 -1.9734 17 6 3.5524 -5.3194 -3.2042 18 8 3.4427 -4.5082 -4.1028 19 6 4.1982 -6.6245 -3.4611 20 6 4.3286 -7.5564 -2.4162 21 6 4.9129 -8.7629 -2.6289 22 6 5.4075 -9.0919 -3.9044 23 7 5.9907 -10.2748 -4.1302 24 6 6.4452 -10.5593 -5.3291 25 6 6.3262 -9.6393 -6.3744 26 7 5.7572 -8.4727 -6.1783 27 6 5.2861 -8.1594 -4.9654 28 6 4.6755 -6.9174 -4.7269 29 1 -0.4850 0.8400 0.0004 30 1 -0.7023 -2.3867 -0.6043 31 1 -0.4179 -1.8634 1.0829 32 1 -1.2636 -4.3870 0.6060 33 1 0.0280 -4.1150 1.8234 34 1 0.3202 -4.9691 -1.1120 35 1 1.1330 -5.6543 0.3334 36 1 3.1793 -2.9376 -1.8422 37 1 1.6284 -3.5899 -2.4234 38 1 3.1744 -5.6760 -1.2562 39 1 3.9549 -7.3108 -1.4331 40 1 5.0012 -9.4699 -1.8173 41 1 6.9152 -11.5148 -5.5092 42 1 6.7056 -9.8911 -7.3537 43 1 4.5773 -6.1970 -5.5256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028307555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:11 Heat of formation + Delta-G solvation = 36.165799 kcal Electronic energy + Delta-G solvation = -26346.270861 eV Core-core repulsion = 22584.183064 eV Total energy + Delta-G solvation = -3762.087797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.48842 -41.03506 -39.35293 -38.08555 -35.98959 -35.78549 -34.42413 -32.34494 -31.70301 -31.36929 -30.27608 -27.20105 -26.53592 -25.66241 -25.20268 -23.38039 -22.41531 -21.89699 -21.23284 -19.92673 -19.40443 -18.66026 -18.17212 -17.56045 -17.20257 -16.62670 -16.53395 -16.10541 -15.95307 -15.70738 -15.65452 -15.21153 -14.86335 -14.80038 -14.70431 -13.97643 -13.65260 -13.60972 -13.42426 -13.04136 -12.90199 -12.87063 -12.83179 -12.80576 -12.74475 -12.64606 -12.06656 -11.87773 -11.72956 -11.48009 -11.38872 -11.22536 -10.67808 -10.28000 -10.18220 -10.02327 -9.72680 -8.86500 -7.88659 -5.26193 -1.04339 -0.64100 0.69627 1.27518 1.43678 1.47178 1.52513 1.94937 2.15507 2.48679 2.93321 2.97675 3.09996 3.17987 3.30708 3.48487 3.73849 3.79917 3.86072 3.95400 3.97892 3.99205 4.12731 4.28145 4.42498 4.45362 4.54370 4.66799 4.70919 4.73911 4.89749 4.97659 5.01504 5.03086 5.14361 5.16166 5.20548 5.31549 5.47617 5.50034 5.56348 5.67495 5.79191 6.19218 6.22910 6.46114 6.65095 7.08430 7.11537 7.76296 8.41629 9.21853 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022360 B = 0.002437 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.922427 B =11486.316243 C =12267.169245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.971 3.029 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.240 4.240 8 H 0.078 0.922 9 N -0.610 5.610 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.114 4.114 13 C 0.148 3.852 14 H 0.058 0.942 15 C 0.127 3.873 16 N -0.694 5.694 17 C 0.550 3.450 18 O -0.584 6.584 19 C -0.113 4.113 20 C -0.067 4.067 21 C -0.078 4.078 22 C 0.077 3.923 23 N -0.447 5.447 24 C 0.098 3.902 25 C 0.084 3.916 26 N -0.455 5.455 27 C 0.048 3.952 28 C -0.033 4.033 29 H 0.247 0.753 30 H -0.010 1.010 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.036 0.964 37 H 0.038 0.962 38 H 0.417 0.583 39 H 0.174 0.826 40 H 0.174 0.826 41 H 0.224 0.776 42 H 0.219 0.781 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.601 -27.052 -5.371 29.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.254 4.254 3 Si 0.799 3.201 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.369 4.369 8 H 0.096 0.904 9 N -0.335 5.335 10 C 0.047 3.953 11 C -0.172 4.172 12 C -0.152 4.152 13 C 0.040 3.960 14 H 0.075 0.925 15 C 0.001 3.999 16 N -0.346 5.346 17 C 0.338 3.662 18 O -0.465 6.465 19 C -0.119 4.119 20 C -0.087 4.087 21 C -0.097 4.097 22 C -0.046 4.046 23 N -0.161 5.161 24 C -0.078 4.078 25 C -0.092 4.092 26 N -0.170 5.170 27 C -0.074 4.074 28 C -0.053 4.053 29 H 0.057 0.943 30 H 0.008 0.992 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.256 0.744 39 H 0.191 0.809 40 H 0.192 0.808 41 H 0.241 0.759 42 H 0.235 0.765 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.312 -26.035 -5.760 28.965 hybrid contribution 0.141 1.605 -0.301 1.639 sum 11.453 -24.430 -6.061 27.654 Atomic orbital electron populations 1.70132 1.06264 1.25438 1.57509 1.25677 0.96506 1.01003 1.02215 0.85275 0.77338 0.79304 0.78179 1.20969 1.22016 1.19820 1.19275 0.90791 0.83611 1.43261 0.90431 1.44740 1.06572 1.02032 1.80129 1.21283 0.84036 0.93683 0.96295 1.22870 0.99631 0.95172 0.99503 1.22633 0.95079 0.97505 0.99958 1.21370 0.96218 0.86726 0.91658 0.92471 1.21792 0.95586 0.83587 0.98953 1.45700 1.58831 1.18917 1.11201 1.18610 0.78205 0.86742 0.82687 1.90789 1.58947 1.51175 1.45563 1.19871 1.02260 0.94512 0.95210 1.21296 0.96413 0.91858 0.99174 1.20995 0.96370 0.97210 0.95137 1.19937 0.97887 0.91190 0.95566 1.68838 1.07525 1.16058 1.23691 1.25007 0.93177 1.01998 0.87666 1.24939 0.92962 0.88254 1.03094 1.68690 1.07462 1.20097 1.20705 1.19447 1.00875 0.95759 0.91327 1.21165 0.93018 0.94432 0.96733 0.94330 0.99239 0.94489 0.90030 0.90921 0.91779 0.87172 0.94510 0.94313 0.74375 0.80911 0.80830 0.75928 0.76499 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.18 10.56 21.65 0.23 -56.95 16 2 C -0.06 -3.45 5.47 84.86 0.46 -2.99 16 3 Si 0.97 46.53 29.55 68.60 2.03 48.56 16 4 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.24 -13.31 9.75 84.03 0.82 -12.49 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.61 -30.19 3.13 -668.30 -2.09 -32.28 16 10 C 0.17 8.27 5.42 86.86 0.47 8.74 16 11 C -0.13 -4.45 7.08 31.99 0.23 -4.22 16 12 C -0.11 -3.26 6.14 31.78 0.20 -3.06 16 13 C 0.15 5.42 3.21 45.34 0.15 5.57 16 14 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 15 C 0.13 4.82 5.08 86.38 0.44 5.26 16 16 N -0.69 -19.24 5.29 -465.95 -2.46 -21.70 16 17 C 0.55 17.34 7.77 86.79 0.67 18.02 16 18 O -0.58 -24.52 16.30 -3.88 -0.06 -24.58 16 19 C -0.11 -2.76 5.87 -20.11 -0.12 -2.87 16 20 C -0.07 -1.07 9.44 22.27 0.21 -0.86 16 21 C -0.08 -1.19 9.95 22.29 0.22 -0.97 16 22 C 0.08 1.51 6.59 40.32 0.27 1.78 16 23 N -0.45 -7.30 10.46 -187.89 -1.96 -9.26 16 24 C 0.10 0.91 11.22 85.14 0.95 1.87 16 25 C 0.08 0.94 11.21 85.14 0.95 1.90 16 26 N -0.46 -9.63 10.46 -188.12 -1.97 -11.60 16 27 C 0.05 1.12 6.58 40.25 0.27 1.39 16 28 C -0.03 -0.87 9.56 22.85 0.22 -0.65 16 29 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 30 H -0.01 -0.57 8.07 -2.39 -0.02 -0.59 16 31 H 0.04 2.01 6.90 -2.39 -0.02 2.00 16 32 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.06 1.87 7.80 -2.39 -0.02 1.85 16 35 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.04 1.63 7.90 -2.39 -0.02 1.61 16 37 H 0.04 1.70 8.06 -2.38 -0.02 1.68 16 38 H 0.42 7.70 6.35 -92.70 -0.59 7.11 16 39 H 0.17 1.48 6.35 -2.91 -0.02 1.46 16 40 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.22 -0.20 8.06 -2.91 -0.02 -0.22 16 42 H 0.22 0.38 8.06 -2.91 -0.02 0.36 16 43 H 0.13 3.95 7.61 -2.91 -0.02 3.93 16 Total: -1.00 -82.50 359.30 0.57 -81.93 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.46 Total: 9.48 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 6.41 Total: 16.41 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -8.26 Total: -131.79 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.06 Total: -24.58 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -82.50 0.57 -81.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028307555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.092 kcal (2) G-P(sol) polarization free energy of solvation -82.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds