Wall clock time and date at job start Tue Mar 31 2020 14:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99948 * 2 1 4 4 H 1.48490 * 109.47497 * 264.67702 * 3 2 1 5 5 H 1.48508 * 109.46950 * 24.67358 * 3 2 1 6 6 H 1.48497 * 109.47085 * 144.67035 * 3 2 1 7 7 C 1.38809 * 120.00566 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99906 * 336.24549 * 7 2 1 9 9 N 1.36937 * 120.00337 * 156.23433 * 7 2 1 10 10 C 1.47423 * 125.64707 * 162.05170 * 9 7 2 11 11 C 1.54913 * 104.83095 * 155.91227 * 10 9 7 12 12 C 1.55150 * 101.58162 * 37.01013 * 11 10 9 13 13 H 1.09004 * 110.72225 * 83.03716 * 12 11 10 14 14 C 1.53006 * 110.72108 * 206.13560 * 12 11 10 15 15 N 1.46500 * 109.47114 * 182.55796 * 14 12 11 16 16 C 1.34774 * 119.99832 * 179.97438 * 15 14 12 17 17 O 1.21495 * 120.00246 * 0.02562 * 16 15 14 18 18 C 1.48349 * 119.99936 * 180.02562 * 16 15 14 19 19 C 1.40172 * 119.19986 * 180.02562 * 18 16 15 20 20 C 1.36632 * 119.70376 * 179.97438 * 19 18 16 21 21 C 1.40596 * 118.20624 * 0.02562 * 20 19 18 22 22 C 1.40731 * 121.36923 * 180.02562 * 21 20 19 23 23 C 1.36583 * 118.13301 * 179.97438 * 22 21 20 24 24 C 1.39434 * 119.84575 * 359.97438 * 23 22 21 25 25 N 1.31014 * 121.84052 * 0.02562 * 24 23 22 26 26 C 1.33867 * 121.42188 * 359.97438 * 25 24 23 27 27 N 1.31882 * 119.20522 * 359.72575 * 18 16 15 28 28 C 1.47320 * 125.61662 * 342.27933 * 9 7 2 29 29 H 0.96998 * 120.00410 * 359.97438 * 1 2 3 30 30 H 1.09006 * 110.36584 * 37.07341 * 10 9 7 31 31 H 1.09004 * 110.46280 * 274.79324 * 10 9 7 32 32 H 1.09007 * 111.00060 * 278.93520 * 11 10 9 33 33 H 1.08998 * 111.03419 * 155.10142 * 11 10 9 34 34 H 1.08999 * 109.46871 * 62.55537 * 14 12 11 35 35 H 1.09002 * 109.46721 * 302.56012 * 14 12 11 36 36 H 0.96997 * 120.00302 * 0.02562 * 15 14 12 37 37 H 1.07992 * 120.15277 * 0.02562 * 19 18 16 38 38 H 1.07996 * 120.89345 * 179.97438 * 20 19 18 39 39 H 1.08003 * 120.93760 * 359.95199 * 22 21 20 40 40 H 1.08001 * 120.08175 * 180.02562 * 23 22 21 41 41 H 1.07995 * 119.08327 * 179.97438 * 24 23 22 42 42 H 1.09003 * 110.05796 * 61.68071 * 28 9 7 43 43 H 1.08992 * 109.85181 * 300.41816 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6102 1.9816 -1.3939 5 1 1.3958 2.6826 0.5845 6 1 3.4869 1.4753 0.8096 7 6 2.0103 -1.2020 -0.0005 8 1 1.5390 -2.0980 0.3758 9 7 3.2926 -1.2521 -0.4785 10 6 4.2679 -2.3248 -0.2112 11 6 5.2610 -2.2627 -1.3986 12 6 5.3571 -0.7338 -1.6446 13 1 6.0753 -0.2779 -0.9630 14 6 5.7331 -0.4421 -3.0987 15 7 5.8759 1.0040 -3.2855 16 6 6.2062 1.4978 -4.4952 17 8 6.3850 0.7438 -5.4310 18 6 6.3514 2.9620 -4.6842 19 6 6.6948 3.4574 -5.9497 20 6 6.8307 4.8042 -6.1354 21 6 6.6182 5.6518 -5.0340 22 6 6.7400 7.0489 -5.1504 23 6 6.5184 7.8097 -4.0379 24 6 6.1817 7.1948 -2.8326 25 7 6.0692 5.8937 -2.7282 26 6 6.2727 5.0891 -3.7786 27 7 6.1484 3.7664 -3.6590 28 6 3.9269 -0.2400 -1.3409 29 1 -0.4850 0.8400 0.0004 30 1 3.7686 -3.2934 -0.1846 31 1 4.7885 -2.1411 0.7287 32 1 4.8576 -2.7745 -2.2724 33 1 6.2305 -2.6753 -1.1197 34 1 4.9514 -0.8182 -3.7586 35 1 6.6765 -0.9340 -3.3357 36 1 5.7336 1.6059 -2.5383 37 1 6.8505 2.7778 -6.7744 38 1 7.0951 5.2068 -7.1021 39 1 7.0017 7.5068 -6.0929 40 1 6.6030 8.8850 -4.0918 41 1 6.0096 7.8082 -1.9606 42 1 3.9676 0.7189 -0.8243 43 1 3.3644 -0.1398 -2.2691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028554381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:27 Heat of formation + Delta-G solvation = 72.109319 kcal Electronic energy + Delta-G solvation = -26733.802842 eV Core-core repulsion = 22973.273673 eV Total energy + Delta-G solvation = -3760.529169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.62101 -39.86154 -38.19702 -37.60372 -34.90276 -34.40875 -32.55798 -31.59982 -31.32951 -30.31331 -28.68163 -26.51863 -25.32962 -24.56079 -23.49402 -22.99425 -21.21328 -20.28623 -20.19054 -19.14003 -18.29272 -17.57865 -16.91300 -16.41783 -16.25332 -15.85879 -15.60972 -15.13981 -14.84169 -14.67446 -14.53258 -14.15788 -13.60174 -13.51229 -13.42144 -13.33785 -12.84079 -12.45407 -12.39451 -12.31220 -11.91418 -11.52297 -11.50713 -11.26002 -11.06597 -10.91685 -10.70222 -10.50522 -10.21395 -10.14413 -9.81199 -9.40118 -9.38697 -9.30555 -9.27451 -8.99869 -8.56385 -7.01372 -5.90047 -3.18321 -0.32939 0.10468 1.46474 2.03636 2.89569 2.98429 3.32800 3.43656 3.55688 3.57367 3.78717 3.96582 4.18207 4.21292 4.34698 4.44840 4.60892 4.63492 4.85236 4.88083 4.91776 5.06860 5.11560 5.22943 5.28852 5.38601 5.45434 5.49284 5.67252 5.68349 5.76230 5.82975 5.88210 6.06314 6.12273 6.15411 6.30841 6.37728 6.50795 6.64135 6.79201 6.83078 6.90282 7.44633 7.73562 7.76001 8.07245 8.35967 8.88359 9.74571 10.23385 11.26279 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012705 B = 0.003604 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.253794 B = 7766.669130 C = 9352.741752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.021 3.979 3 Si 0.887 3.113 4 H -0.285 1.285 5 H -0.305 1.305 6 H -0.280 1.280 7 C -0.243 4.243 8 H 0.093 0.907 9 N -0.610 5.610 10 C 0.133 3.867 11 C -0.120 4.120 12 C -0.117 4.117 13 H 0.082 0.918 14 C 0.129 3.871 15 N -0.700 5.700 16 C 0.567 3.433 17 O -0.531 6.531 18 C 0.148 3.852 19 C -0.128 4.128 20 C -0.047 4.047 21 C -0.143 4.143 22 C -0.047 4.047 23 C -0.173 4.173 24 C 0.159 3.841 25 N -0.457 5.457 26 C 0.303 3.697 27 N -0.434 5.434 28 C 0.124 3.876 29 H 0.262 0.738 30 H 0.050 0.950 31 H 0.024 0.976 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.415 0.585 37 H 0.158 0.842 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.170 0.830 42 H 0.026 0.974 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.620 14.421 -12.770 26.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.177 4.177 3 Si 0.719 3.281 4 H -0.212 1.212 5 H -0.233 1.233 6 H -0.206 1.206 7 C -0.370 4.370 8 H 0.111 0.889 9 N -0.337 5.337 10 C 0.007 3.993 11 C -0.159 4.159 12 C -0.136 4.136 13 H 0.100 0.900 14 C 0.006 3.994 15 N -0.351 5.351 16 C 0.350 3.650 17 O -0.407 6.407 18 C -0.009 4.009 19 C -0.149 4.149 20 C -0.074 4.074 21 C -0.148 4.148 22 C -0.074 4.074 23 C -0.193 4.193 24 C -0.018 4.018 25 N -0.165 5.165 26 C 0.064 3.936 27 N -0.147 5.147 28 C -0.001 4.001 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.251 0.749 37 H 0.176 0.824 38 H 0.168 0.832 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.187 0.813 42 H 0.043 0.957 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 18.015 13.119 -11.733 25.186 hybrid contribution 0.707 2.275 -1.055 2.605 sum 18.723 15.394 -12.789 27.406 Atomic orbital electron populations 1.69862 1.05546 1.26539 1.53171 1.24949 0.95142 0.97400 1.00227 0.86926 0.78812 0.84554 0.77834 1.21236 1.23303 1.20635 1.18660 0.85222 0.95610 1.37496 0.88943 1.44864 1.10881 1.22165 1.55827 1.21610 0.90148 0.93070 0.94460 1.22727 0.99507 0.93681 1.00007 1.22470 0.98452 0.98078 0.94649 0.90000 1.21550 1.01905 0.79141 0.96777 1.45980 1.67905 1.09473 1.11746 1.17812 0.77909 0.85806 0.83466 1.90784 1.51118 1.58115 1.40645 1.21509 0.95333 0.94225 0.89838 1.21849 0.98658 0.96356 0.98048 1.21466 0.94992 0.92720 0.98210 1.19740 1.03224 0.95813 0.96056 1.21496 0.94660 0.91557 0.99638 1.22088 1.01227 1.02066 0.93872 1.23202 0.91057 0.89908 0.97633 1.67679 1.13436 1.05129 1.30285 1.19203 0.96305 0.90030 0.88040 1.67393 1.11951 1.03386 1.31929 1.21768 0.90631 0.92890 0.94808 0.92781 0.93156 0.95786 0.90847 0.91194 0.90478 0.90849 0.74880 0.82440 0.83152 0.83723 0.83661 0.81295 0.95678 0.93979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.86 13.97 55.49 0.78 -28.09 16 2 C 0.02 0.65 5.43 -17.43 -0.09 0.55 16 3 Si 0.89 24.01 24.38 -169.99 -4.15 19.86 16 4 H -0.29 -7.57 6.83 56.52 0.39 -7.19 16 5 H -0.30 -8.34 7.11 56.52 0.40 -7.93 16 6 H -0.28 -7.45 6.87 56.52 0.39 -7.06 16 7 C -0.24 -7.11 10.56 -15.06 -0.16 -7.27 16 8 H 0.09 2.83 8.06 -52.48 -0.42 2.41 16 9 N -0.61 -15.20 3.22 -169.83 -0.55 -15.75 16 10 C 0.13 2.62 7.23 -2.53 -0.02 2.60 16 11 C -0.12 -1.88 6.54 -24.58 -0.16 -2.04 16 12 C -0.12 -1.96 2.98 -88.79 -0.26 -2.23 16 13 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 14 C 0.13 1.97 5.00 -4.04 -0.02 1.95 16 15 N -0.70 -11.08 5.42 -61.08 -0.33 -11.41 16 16 C 0.57 8.87 7.81 -12.10 -0.09 8.77 16 17 O -0.53 -9.02 16.28 5.37 0.09 -8.93 16 18 C 0.15 2.10 6.75 -82.96 -0.56 1.54 16 19 C -0.13 -1.38 9.54 -39.44 -0.38 -1.75 16 20 C -0.05 -0.40 9.89 -39.27 -0.39 -0.78 16 21 C -0.14 -1.46 5.75 -106.69 -0.61 -2.07 16 22 C -0.05 -0.31 9.90 -39.24 -0.39 -0.70 16 23 C -0.17 -1.06 10.04 -39.73 -0.40 -1.46 16 24 C 0.16 1.40 11.14 -17.45 -0.19 1.21 16 25 N -0.46 -6.27 10.43 -12.59 -0.13 -6.40 16 26 C 0.30 4.24 7.62 -157.90 -1.20 3.04 16 27 N -0.43 -6.78 9.56 -9.19 -0.09 -6.87 16 28 C 0.12 2.77 4.55 -2.90 -0.01 2.76 16 29 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 1.11 8.05 -51.92 -0.42 0.69 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.25 8.00 -51.93 -0.42 0.83 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.41 6.77 7.71 -40.82 -0.31 6.46 16 37 H 0.16 1.45 7.60 -52.49 -0.40 1.05 16 38 H 0.15 0.65 8.06 -52.49 -0.42 0.22 16 39 H 0.15 0.45 8.06 -52.48 -0.42 0.03 16 40 H 0.15 0.38 8.06 -52.49 -0.42 -0.05 16 41 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.03 0.62 3.55 -51.93 -0.18 0.44 16 43 H 0.04 1.01 7.73 -51.93 -0.40 0.61 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -37.51 356.73 -9.47 -46.98 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.52 Total: 1.11 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -4.95 Total: 4.12 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -0.32 Total: -68.52 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -4.15 Total: 19.86 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.51 -9.47 -46.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028554381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.092 kcal (2) G-P(sol) polarization free energy of solvation -37.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds