Wall clock time and date at job start Tue Mar 31 2020 14:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99948 * 2 1 4 4 H 1.48490 * 109.47497 * 264.67702 * 3 2 1 5 5 H 1.48508 * 109.46950 * 24.67358 * 3 2 1 6 6 H 1.48497 * 109.47085 * 144.67035 * 3 2 1 7 7 C 1.38809 * 120.00566 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99906 * 336.24549 * 7 2 1 9 9 N 1.36937 * 120.00337 * 156.23433 * 7 2 1 10 10 C 1.47423 * 125.64707 * 162.05170 * 9 7 2 11 11 C 1.54913 * 104.83095 * 155.91227 * 10 9 7 12 12 C 1.55150 * 101.58162 * 37.01013 * 11 10 9 13 13 H 1.09004 * 110.72225 * 83.03716 * 12 11 10 14 14 C 1.53006 * 110.72108 * 206.13560 * 12 11 10 15 15 N 1.46500 * 109.47114 * 182.55796 * 14 12 11 16 16 C 1.34774 * 119.99832 * 179.97438 * 15 14 12 17 17 O 1.21495 * 120.00246 * 0.02562 * 16 15 14 18 18 C 1.48349 * 119.99936 * 180.02562 * 16 15 14 19 19 C 1.40172 * 119.19986 * 180.02562 * 18 16 15 20 20 C 1.36632 * 119.70376 * 179.97438 * 19 18 16 21 21 C 1.40596 * 118.20624 * 0.02562 * 20 19 18 22 22 C 1.40731 * 121.36923 * 180.02562 * 21 20 19 23 23 C 1.36583 * 118.13301 * 179.97438 * 22 21 20 24 24 C 1.39434 * 119.84575 * 359.97438 * 23 22 21 25 25 N 1.31014 * 121.84052 * 0.02562 * 24 23 22 26 26 C 1.33867 * 121.42188 * 359.97438 * 25 24 23 27 27 N 1.31882 * 119.20522 * 359.72575 * 18 16 15 28 28 C 1.47320 * 125.61662 * 342.27933 * 9 7 2 29 29 H 0.96998 * 120.00410 * 359.97438 * 1 2 3 30 30 H 1.09006 * 110.36584 * 37.07341 * 10 9 7 31 31 H 1.09004 * 110.46280 * 274.79324 * 10 9 7 32 32 H 1.09007 * 111.00060 * 278.93520 * 11 10 9 33 33 H 1.08998 * 111.03419 * 155.10142 * 11 10 9 34 34 H 1.08999 * 109.46871 * 62.55537 * 14 12 11 35 35 H 1.09002 * 109.46721 * 302.56012 * 14 12 11 36 36 H 0.96997 * 120.00302 * 0.02562 * 15 14 12 37 37 H 1.07992 * 120.15277 * 0.02562 * 19 18 16 38 38 H 1.07996 * 120.89345 * 179.97438 * 20 19 18 39 39 H 1.08003 * 120.93760 * 359.95199 * 22 21 20 40 40 H 1.08001 * 120.08175 * 180.02562 * 23 22 21 41 41 H 1.07995 * 119.08327 * 179.97438 * 24 23 22 42 42 H 1.09003 * 110.05796 * 61.68071 * 28 9 7 43 43 H 1.08992 * 109.85181 * 300.41816 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6102 1.9816 -1.3939 5 1 1.3958 2.6826 0.5845 6 1 3.4869 1.4753 0.8096 7 6 2.0103 -1.2020 -0.0005 8 1 1.5390 -2.0980 0.3758 9 7 3.2926 -1.2521 -0.4785 10 6 4.2679 -2.3248 -0.2112 11 6 5.2610 -2.2627 -1.3986 12 6 5.3571 -0.7338 -1.6446 13 1 6.0753 -0.2779 -0.9630 14 6 5.7331 -0.4421 -3.0987 15 7 5.8759 1.0040 -3.2855 16 6 6.2062 1.4978 -4.4952 17 8 6.3850 0.7438 -5.4310 18 6 6.3514 2.9620 -4.6842 19 6 6.6948 3.4574 -5.9497 20 6 6.8307 4.8042 -6.1354 21 6 6.6182 5.6518 -5.0340 22 6 6.7400 7.0489 -5.1504 23 6 6.5184 7.8097 -4.0379 24 6 6.1817 7.1948 -2.8326 25 7 6.0692 5.8937 -2.7282 26 6 6.2727 5.0891 -3.7786 27 7 6.1484 3.7664 -3.6590 28 6 3.9269 -0.2400 -1.3409 29 1 -0.4850 0.8400 0.0004 30 1 3.7686 -3.2934 -0.1846 31 1 4.7885 -2.1411 0.7287 32 1 4.8576 -2.7745 -2.2724 33 1 6.2305 -2.6753 -1.1197 34 1 4.9514 -0.8182 -3.7586 35 1 6.6765 -0.9340 -3.3357 36 1 5.7336 1.6059 -2.5383 37 1 6.8505 2.7778 -6.7744 38 1 7.0951 5.2068 -7.1021 39 1 7.0017 7.5068 -6.0929 40 1 6.6030 8.8850 -4.0918 41 1 6.0096 7.8082 -1.9606 42 1 3.9676 0.7189 -0.8243 43 1 3.3644 -0.1398 -2.2691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028554381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:26 Heat of formation + Delta-G solvation = 43.861829 kcal Electronic energy + Delta-G solvation = -26735.027745 eV Core-core repulsion = 22973.273673 eV Total energy + Delta-G solvation = -3761.754072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.39341 -40.96951 -39.62358 -38.57288 -36.23530 -35.22648 -34.52082 -32.59715 -32.12785 -31.84751 -30.22657 -27.83382 -26.64158 -25.53036 -24.92339 -23.70604 -22.48645 -21.82796 -21.60566 -19.97743 -19.29964 -18.98538 -18.25242 -17.86714 -17.33909 -17.06565 -16.75437 -16.27772 -15.84318 -15.79068 -15.56538 -15.25340 -15.15321 -15.04560 -14.44158 -14.37882 -14.25400 -14.03340 -13.58190 -13.29463 -13.23109 -13.09238 -12.91479 -12.69803 -12.48933 -12.20374 -12.18818 -11.94592 -11.88802 -11.63221 -11.32012 -11.24854 -10.82483 -10.32572 -10.16832 -10.08189 -9.96135 -9.12207 -8.25600 -5.48265 -1.05597 -0.60332 0.77205 1.21171 1.23473 1.29381 1.37470 1.85162 2.05471 2.33195 2.48591 2.95506 2.99575 3.25447 3.32187 3.37445 3.57917 3.64133 3.72735 3.76823 3.83466 3.88566 4.01210 4.20915 4.31569 4.42192 4.43618 4.50970 4.59303 4.62107 4.69385 4.78007 4.82735 4.90528 5.00522 5.07039 5.07799 5.11625 5.17603 5.23548 5.41646 5.56089 5.64121 6.04202 6.04279 6.30555 6.71197 6.83911 7.03395 7.49155 8.06449 8.94644 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012705 B = 0.003604 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.253794 B = 7766.669130 C = 9352.741752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.034 4.034 3 Si 0.947 3.053 4 H -0.287 1.287 5 H -0.310 1.310 6 H -0.273 1.273 7 C -0.232 4.232 8 H 0.068 0.932 9 N -0.631 5.631 10 C 0.122 3.878 11 C -0.103 4.103 12 C -0.102 4.102 13 H 0.099 0.901 14 C 0.135 3.865 15 N -0.707 5.707 16 C 0.565 3.435 17 O -0.551 6.551 18 C 0.123 3.877 19 C -0.142 4.142 20 C -0.022 4.022 21 C -0.153 4.153 22 C -0.038 4.038 23 C -0.162 4.162 24 C 0.157 3.843 25 N -0.520 5.520 26 C 0.267 3.733 27 N -0.478 5.478 28 C 0.120 3.880 29 H 0.262 0.738 30 H 0.051 0.949 31 H 0.035 0.965 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.410 0.590 37 H 0.169 0.831 38 H 0.202 0.798 39 H 0.193 0.807 40 H 0.191 0.809 41 H 0.194 0.806 42 H 0.008 0.992 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.896 16.857 -14.851 31.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.229 4.229 3 Si 0.779 3.221 4 H -0.214 1.214 5 H -0.238 1.238 6 H -0.200 1.200 7 C -0.361 4.361 8 H 0.085 0.915 9 N -0.358 5.358 10 C -0.002 4.002 11 C -0.142 4.142 12 C -0.121 4.121 13 H 0.117 0.883 14 C 0.012 3.988 15 N -0.357 5.357 16 C 0.350 3.650 17 O -0.428 6.428 18 C -0.032 4.032 19 C -0.163 4.163 20 C -0.048 4.048 21 C -0.158 4.158 22 C -0.064 4.064 23 C -0.181 4.181 24 C -0.019 4.019 25 N -0.230 5.230 26 C 0.029 3.971 27 N -0.192 5.192 28 C -0.005 4.005 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.134 0.866 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.246 0.754 37 H 0.186 0.814 38 H 0.219 0.781 39 H 0.210 0.790 40 H 0.208 0.792 41 H 0.211 0.789 42 H 0.025 0.975 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 21.343 15.531 -13.815 29.792 hybrid contribution -0.308 1.604 -0.378 1.677 sum 21.035 17.135 -14.193 30.619 Atomic orbital electron populations 1.69962 1.06879 1.27056 1.55951 1.25494 0.95716 1.00186 1.01461 0.85945 0.77530 0.80979 0.77615 1.21402 1.23837 1.19960 1.18692 0.87222 0.94558 1.35592 0.91455 1.45059 1.10555 1.24078 1.56071 1.21909 0.90083 0.91337 0.96901 1.22711 1.00456 0.92725 0.98280 1.22399 0.94789 0.98943 0.96007 0.88280 1.21505 1.02700 0.79244 0.95311 1.46063 1.68114 1.09605 1.11917 1.18148 0.77083 0.86827 0.82941 1.90746 1.52167 1.58939 1.40986 1.21393 0.97476 0.93084 0.91277 1.22004 0.99511 0.97904 0.96886 1.22013 0.91881 0.91345 0.99558 1.20064 1.02861 0.97960 0.94960 1.22064 0.92853 0.89715 1.01748 1.22558 0.98997 1.04193 0.92350 1.23867 0.89269 0.88782 0.99994 1.67611 1.16456 1.07285 1.31666 1.19513 0.97952 0.89675 0.89959 1.67198 1.13736 1.04975 1.33262 1.21806 0.93836 0.91888 0.92945 0.92928 0.93059 0.94667 0.90276 0.86630 0.91829 0.88158 0.75396 0.81368 0.78081 0.79011 0.79177 0.78919 0.97476 0.96322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.91 13.97 21.65 0.30 -62.61 16 2 C -0.03 -2.11 5.43 84.86 0.46 -1.65 16 3 Si 0.95 51.94 24.38 68.60 1.67 53.61 16 4 H -0.29 -15.55 6.83 99.48 0.68 -14.87 16 5 H -0.31 -17.00 7.11 99.48 0.71 -16.29 16 6 H -0.27 -14.47 6.87 99.48 0.68 -13.78 16 7 C -0.23 -14.00 10.56 84.03 0.89 -13.11 16 8 H 0.07 4.31 8.06 -2.91 -0.02 4.28 16 9 N -0.63 -31.68 3.22 -691.22 -2.22 -33.90 16 10 C 0.12 4.64 7.23 86.86 0.63 5.27 16 11 C -0.10 -2.92 6.54 31.99 0.21 -2.71 16 12 C -0.10 -3.27 2.98 -9.61 -0.03 -3.29 16 13 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 14 C 0.14 4.00 5.00 86.38 0.43 4.43 16 15 N -0.71 -22.78 5.42 -465.48 -2.52 -25.30 16 16 C 0.57 18.16 7.81 86.94 0.68 18.84 16 17 O -0.55 -18.91 16.28 -3.70 -0.06 -18.97 16 18 C 0.12 3.58 6.75 42.30 0.29 3.87 16 19 C -0.14 -2.92 9.54 22.36 0.21 -2.70 16 20 C -0.02 -0.30 9.89 22.47 0.22 -0.08 16 21 C -0.15 -2.76 5.75 -21.20 -0.12 -2.88 16 22 C -0.04 -0.33 9.90 22.49 0.22 -0.11 16 23 C -0.16 -1.30 10.04 22.17 0.22 -1.08 16 24 C 0.16 2.49 11.14 85.10 0.95 3.43 16 25 N -0.52 -14.44 10.43 -193.76 -2.02 -16.46 16 26 C 0.27 7.55 7.62 135.11 1.03 8.58 16 27 N -0.48 -15.62 9.56 -182.98 -1.75 -17.37 16 28 C 0.12 5.42 4.55 86.67 0.39 5.81 16 29 H 0.26 16.50 8.31 -92.71 -0.77 15.73 16 30 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 2.18 8.05 -2.38 -0.02 2.16 16 33 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.06 2.06 8.00 -2.39 -0.02 2.04 16 35 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.41 13.94 7.71 -92.71 -0.71 13.22 16 37 H 0.17 2.92 7.60 -2.91 -0.02 2.90 16 38 H 0.20 0.58 8.06 -2.91 -0.02 0.55 16 39 H 0.19 -0.16 8.06 -2.91 -0.02 -0.18 16 40 H 0.19 -0.20 8.06 -2.91 -0.02 -0.22 16 41 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 42 H 0.01 0.38 3.55 -2.39 -0.01 0.37 16 43 H 0.02 0.93 7.73 -2.39 -0.02 0.91 16 Total: -1.00 -89.40 356.73 0.37 -89.04 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.28 Total: 9.34 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: 6.68 Total: 22.62 kcal Atomic # 7 Polarization: -147.43 SS G_CDS: -8.21 Total: -155.64 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.06 Total: -18.97 kcal Atomic # 14 Polarization: 51.94 SS G_CDS: 1.67 Total: 53.61 kcal Total: -89.40 0.37 -89.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028554381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.898 kcal (2) G-P(sol) polarization free energy of solvation -89.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds