Wall clock time and date at job start Tue Mar 31 2020 15:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00181 * 2 1 4 4 H 1.48505 * 109.47103 * 240.00231 * 3 2 1 5 5 H 1.48502 * 109.47327 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47083 * 120.00148 * 3 2 1 7 7 C 1.38813 * 119.99514 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99895 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00564 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64542 * 359.69503 * 9 7 2 11 11 C 1.54910 * 104.83231 * 156.13438 * 10 9 7 12 12 C 1.55160 * 101.58122 * 37.00939 * 11 10 9 13 13 H 1.09002 * 110.71871 * 82.86501 * 12 11 10 14 14 C 1.52996 * 110.71864 * 206.13184 * 12 11 10 15 15 N 1.46498 * 109.47108 * 179.97438 * 14 12 11 16 16 C 1.34780 * 120.00246 * 180.02562 * 15 14 12 17 17 O 1.21507 * 119.99773 * 359.97438 * 16 15 14 18 18 C 1.48230 * 119.99937 * 180.02562 * 16 15 14 19 19 C 1.40581 * 119.74388 * 179.72459 * 18 16 15 20 20 N 1.31267 * 120.56721 * 179.65425 * 19 18 16 21 21 C 1.33779 * 119.80496 * 0.66110 * 20 19 18 22 22 C 1.40542 * 121.00112 * 179.62480 * 21 20 19 23 23 C 1.36077 * 119.76066 * 179.97438 * 22 21 20 24 24 C 1.39478 * 121.00934 * 0.04052 * 23 22 21 25 25 C 1.35996 * 120.98683 * 359.97438 * 24 23 22 26 26 C 1.40814 * 119.69647 * 359.97438 * 25 24 23 27 27 N 1.32161 * 119.75075 * 0.02562 * 18 16 15 28 28 C 1.47026 * 125.65326 * 180.02562 * 9 7 2 29 29 H 0.97002 * 119.99999 * 359.97438 * 1 2 3 30 30 H 1.09001 * 110.36478 * 274.97390 * 10 9 7 31 31 H 1.08998 * 110.36859 * 37.29768 * 10 9 7 32 32 H 1.08991 * 111.00552 * 278.93287 * 11 10 9 33 33 H 1.09004 * 111.03615 * 155.09334 * 11 10 9 34 34 H 1.09003 * 109.47550 * 299.97884 * 14 12 11 35 35 H 1.09000 * 109.47105 * 59.97868 * 14 12 11 36 36 H 0.96999 * 120.00294 * 0.02562 * 15 14 12 37 37 H 1.07995 * 119.71556 * 0.02562 * 19 18 16 38 38 H 1.08008 * 120.11690 * 359.95644 * 22 21 20 39 39 H 1.08000 * 119.49720 * 180.02562 * 23 22 21 40 40 H 1.08004 * 119.50579 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.14671 * 179.97438 * 25 24 23 42 42 H 1.09004 * 109.87531 * 300.21350 * 28 9 7 43 43 H 1.08996 * 109.88343 * 61.22069 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5331 0.0064 11 6 -0.4045 -3.9332 -0.6022 12 6 0.7781 -4.7525 -0.0213 13 1 0.5502 -5.0966 0.9875 14 6 1.1186 -5.9328 -0.9333 15 7 2.2370 -6.6858 -0.3604 16 6 2.7123 -7.7749 -0.9965 17 8 2.2129 -8.1324 -2.0449 18 6 3.8436 -8.5372 -0.4165 19 6 4.3313 -9.6757 -1.0815 20 7 5.3367 -10.3588 -0.5859 21 6 5.8948 -9.9775 0.5686 22 6 6.9672 -10.6949 1.1259 23 6 7.5162 -10.2843 2.3013 24 6 7.0307 -9.1587 2.9668 25 6 5.9945 -8.4384 2.4600 26 6 5.4003 -8.8309 1.2451 27 7 4.3821 -8.1448 0.7249 28 6 1.9316 -3.7276 -0.0005 29 1 -0.4850 0.8401 0.0004 30 1 -0.5227 -2.4852 1.0265 31 1 -0.6022 -1.7598 -0.6083 32 1 -0.3599 -3.9007 -1.6907 33 1 -1.3604 -4.3336 -0.2642 34 1 0.2498 -6.5848 -1.0235 35 1 1.3980 -5.5613 -1.9193 36 1 2.6355 -6.4007 0.4767 37 1 3.8788 -9.9875 -2.0112 38 1 7.3539 -11.5691 0.6232 39 1 8.3404 -10.8385 2.7256 40 1 7.4844 -8.8547 3.8986 41 1 5.6290 -7.5693 2.9868 42 1 2.5544 -3.8525 -0.8864 43 1 2.5340 -3.8619 0.8978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028596256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:31 Heat of formation + Delta-G solvation = 61.162824 kcal Electronic energy + Delta-G solvation = -26194.414973 eV Core-core repulsion = 22433.411128 eV Total energy + Delta-G solvation = -3761.003844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.88204 -39.73504 -37.90263 -37.47005 -35.38886 -34.65629 -32.54314 -31.41654 -31.03636 -29.79133 -28.29991 -26.37772 -25.52509 -24.78224 -23.43980 -22.65971 -21.31057 -20.17983 -19.76918 -18.91925 -18.72546 -17.79305 -16.84361 -16.19407 -15.99048 -15.88171 -15.41276 -15.14710 -14.78967 -14.72781 -14.46443 -14.23747 -13.87877 -13.58763 -12.95282 -12.50788 -12.39623 -12.30075 -12.22164 -12.11901 -12.09000 -11.78671 -11.70662 -11.49863 -10.96375 -10.79462 -10.64886 -10.33602 -10.13856 -10.02029 -9.81812 -9.57573 -9.43891 -9.43316 -9.08658 -8.99496 -8.64956 -6.83492 -5.65414 -3.07085 -0.38663 0.01211 1.42241 2.07772 2.85819 2.89080 3.40412 3.44504 3.45897 3.51676 3.65100 3.67173 3.83370 4.32503 4.40983 4.48694 4.59739 4.67788 4.78802 4.96664 5.09151 5.24053 5.38506 5.39636 5.41863 5.51882 5.61263 5.67414 5.72815 5.86622 5.87034 6.02725 6.08230 6.18842 6.32723 6.35299 6.55697 6.57888 6.69853 6.73979 6.90256 7.17549 7.45796 7.51044 7.62342 7.85470 8.01759 8.36552 9.22200 9.83092 10.47954 11.38518 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.002549 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.222061 B =10983.834181 C =12273.870191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.223 4.223 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.151 3.849 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.077 0.923 14 C 0.130 3.870 15 N -0.699 5.699 16 C 0.571 3.429 17 O -0.529 6.529 18 C 0.063 3.937 19 C 0.128 3.872 20 N -0.426 5.426 21 C 0.092 3.908 22 C -0.090 4.090 23 C -0.088 4.088 24 C -0.103 4.103 25 C -0.073 4.073 26 C 0.077 3.923 27 N -0.391 5.391 28 C 0.141 3.859 29 H 0.253 0.747 30 H 0.012 0.988 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.412 0.588 37 H 0.188 0.812 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.146 0.854 42 H 0.024 0.976 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.142 -22.177 4.694 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.096 0.904 14 C 0.007 3.993 15 N -0.349 5.349 16 C 0.353 3.647 17 O -0.405 6.405 18 C -0.094 4.094 19 C -0.047 4.047 20 N -0.140 5.140 21 C -0.033 4.033 22 C -0.109 4.109 23 C -0.108 4.108 24 C -0.123 4.123 25 C -0.092 4.092 26 C -0.050 4.050 27 N -0.109 5.109 28 C 0.015 3.985 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.125 0.875 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.248 0.752 37 H 0.205 0.795 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.163 0.837 42 H 0.042 0.958 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 10.838 -22.187 4.059 25.024 hybrid contribution 0.709 0.997 0.530 1.333 sum 11.547 -21.190 4.589 24.564 Atomic orbital electron populations 1.69780 1.04883 1.24891 1.57594 1.24784 0.95737 0.97716 1.02447 0.86148 0.78403 0.83032 0.77888 1.21161 1.21549 1.21236 1.19030 0.90463 0.82509 1.43136 0.90616 1.44497 1.01985 0.99697 1.86848 1.21944 0.84681 0.92489 0.98215 1.23010 0.95443 0.98560 1.00365 1.22452 0.98429 0.93895 0.98684 0.90435 1.21594 0.87857 0.92306 0.97551 1.45965 1.35089 1.27134 1.26741 1.17613 0.81892 0.80922 0.84252 1.90808 1.59066 1.68487 1.22136 1.22533 0.97652 0.96294 0.92874 1.24003 0.90955 0.89952 0.99783 1.68839 1.07516 1.28234 1.09379 1.19815 0.96812 0.94309 0.92317 1.20827 0.94339 0.99927 0.95847 1.21125 0.99215 0.96129 0.94366 1.21075 0.96001 0.94802 1.00411 1.20964 0.95168 1.00118 0.92941 1.19613 0.94594 0.93821 0.96982 1.68523 1.06248 1.27304 1.08806 1.21324 0.93437 0.85964 0.97799 0.93669 0.97015 0.87475 0.91757 0.92047 0.91109 0.90711 0.75173 0.79473 0.84020 0.84434 0.84321 0.83664 0.95827 0.96321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 10.09 55.49 0.56 -26.32 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.22 -6.24 10.27 -15.06 -0.15 -6.40 16 8 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 9 N -0.60 -15.44 3.39 -170.07 -0.58 -16.02 16 10 C 0.15 3.64 5.89 -2.53 -0.01 3.62 16 11 C -0.13 -2.46 6.53 -24.58 -0.16 -2.62 16 12 C -0.12 -1.91 3.02 -88.79 -0.27 -2.18 16 13 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 14 C 0.13 1.89 4.99 -4.04 -0.02 1.87 16 15 N -0.70 -9.54 5.39 -61.13 -0.33 -9.87 16 16 C 0.57 8.02 7.82 -12.15 -0.09 7.92 16 17 O -0.53 -8.53 16.32 5.36 0.09 -8.44 16 18 C 0.06 0.80 6.76 -82.74 -0.56 0.24 16 19 C 0.13 1.48 10.75 -16.91 -0.18 1.29 16 20 N -0.43 -4.95 10.45 -10.52 -0.11 -5.06 16 21 C 0.09 1.00 6.60 -84.70 -0.56 0.44 16 22 C -0.09 -0.70 9.98 -39.49 -0.39 -1.09 16 23 C -0.09 -0.49 9.95 -39.90 -0.40 -0.89 16 24 C -0.10 -0.61 9.95 -39.92 -0.40 -1.01 16 25 C -0.07 -0.61 9.99 -39.41 -0.39 -1.00 16 26 C 0.08 0.85 6.60 -84.79 -0.56 0.29 16 27 N -0.39 -4.83 9.64 -7.39 -0.07 -4.91 16 28 C 0.14 2.88 6.52 -3.07 -0.02 2.86 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.11 2.90 5.87 -51.93 -0.30 2.60 16 32 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 36 H 0.41 5.32 7.66 -40.82 -0.31 5.01 16 37 H 0.19 1.83 7.62 -52.49 -0.40 1.43 16 38 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.14 0.36 8.06 -52.49 -0.42 -0.07 16 40 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 41 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.02 0.49 7.77 -51.93 -0.40 0.09 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 361.36 15.07 5.45 5.45 Total: -1.00 -32.86 361.36 -9.90 -42.76 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.61 Total: 2.40 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -4.27 Total: 2.93 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.53 Total: -62.18 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.86 -9.90 -42.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028596256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.922 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds