Wall clock time and date at job start Tue Mar 31 2020 15:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00181 * 2 1 4 4 H 1.48505 * 109.47103 * 240.00231 * 3 2 1 5 5 H 1.48502 * 109.47327 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47083 * 120.00148 * 3 2 1 7 7 C 1.38813 * 119.99514 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99895 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00564 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64542 * 359.69503 * 9 7 2 11 11 C 1.54910 * 104.83231 * 156.13438 * 10 9 7 12 12 C 1.55160 * 101.58122 * 37.00939 * 11 10 9 13 13 H 1.09002 * 110.71871 * 82.86501 * 12 11 10 14 14 C 1.52996 * 110.71864 * 206.13184 * 12 11 10 15 15 N 1.46498 * 109.47108 * 179.97438 * 14 12 11 16 16 C 1.34780 * 120.00246 * 180.02562 * 15 14 12 17 17 O 1.21507 * 119.99773 * 359.97438 * 16 15 14 18 18 C 1.48230 * 119.99937 * 180.02562 * 16 15 14 19 19 C 1.40581 * 119.74388 * 179.72459 * 18 16 15 20 20 N 1.31267 * 120.56721 * 179.65425 * 19 18 16 21 21 C 1.33779 * 119.80496 * 0.66110 * 20 19 18 22 22 C 1.40542 * 121.00112 * 179.62480 * 21 20 19 23 23 C 1.36077 * 119.76066 * 179.97438 * 22 21 20 24 24 C 1.39478 * 121.00934 * 0.04052 * 23 22 21 25 25 C 1.35996 * 120.98683 * 359.97438 * 24 23 22 26 26 C 1.40814 * 119.69647 * 359.97438 * 25 24 23 27 27 N 1.32161 * 119.75075 * 0.02562 * 18 16 15 28 28 C 1.47026 * 125.65326 * 180.02562 * 9 7 2 29 29 H 0.97002 * 119.99999 * 359.97438 * 1 2 3 30 30 H 1.09001 * 110.36478 * 274.97390 * 10 9 7 31 31 H 1.08998 * 110.36859 * 37.29768 * 10 9 7 32 32 H 1.08991 * 111.00552 * 278.93287 * 11 10 9 33 33 H 1.09004 * 111.03615 * 155.09334 * 11 10 9 34 34 H 1.09003 * 109.47550 * 299.97884 * 14 12 11 35 35 H 1.09000 * 109.47105 * 59.97868 * 14 12 11 36 36 H 0.96999 * 120.00294 * 0.02562 * 15 14 12 37 37 H 1.07995 * 119.71556 * 0.02562 * 19 18 16 38 38 H 1.08008 * 120.11690 * 359.95644 * 22 21 20 39 39 H 1.08000 * 119.49720 * 180.02562 * 23 22 21 40 40 H 1.08004 * 119.50579 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.14671 * 179.97438 * 25 24 23 42 42 H 1.09004 * 109.87531 * 300.21350 * 28 9 7 43 43 H 1.08996 * 109.88343 * 61.22069 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5331 0.0064 11 6 -0.4045 -3.9332 -0.6022 12 6 0.7781 -4.7525 -0.0213 13 1 0.5502 -5.0966 0.9875 14 6 1.1186 -5.9328 -0.9333 15 7 2.2370 -6.6858 -0.3604 16 6 2.7123 -7.7749 -0.9965 17 8 2.2129 -8.1324 -2.0449 18 6 3.8436 -8.5372 -0.4165 19 6 4.3313 -9.6757 -1.0815 20 7 5.3367 -10.3588 -0.5859 21 6 5.8948 -9.9775 0.5686 22 6 6.9672 -10.6949 1.1259 23 6 7.5162 -10.2843 2.3013 24 6 7.0307 -9.1587 2.9668 25 6 5.9945 -8.4384 2.4600 26 6 5.4003 -8.8309 1.2451 27 7 4.3821 -8.1448 0.7249 28 6 1.9316 -3.7276 -0.0005 29 1 -0.4850 0.8401 0.0004 30 1 -0.5227 -2.4852 1.0265 31 1 -0.6022 -1.7598 -0.6083 32 1 -0.3599 -3.9007 -1.6907 33 1 -1.3604 -4.3336 -0.2642 34 1 0.2498 -6.5848 -1.0235 35 1 1.3980 -5.5613 -1.9193 36 1 2.6355 -6.4007 0.4767 37 1 3.8788 -9.9875 -2.0112 38 1 7.3539 -11.5691 0.6232 39 1 8.3404 -10.8385 2.7256 40 1 7.4844 -8.8547 3.8986 41 1 5.6290 -7.5693 2.9868 42 1 2.5544 -3.8525 -0.8864 43 1 2.5340 -3.8619 0.8978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028596256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:30 Heat of formation + Delta-G solvation = 38.858588 kcal Electronic energy + Delta-G solvation = -26195.382157 eV Core-core repulsion = 22433.411128 eV Total energy + Delta-G solvation = -3761.971029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.66237 -40.81775 -39.31478 -38.33013 -36.35092 -35.91138 -34.31764 -32.28791 -31.72081 -31.45321 -29.87262 -27.60592 -26.84582 -25.82390 -24.83539 -23.30892 -22.50503 -21.79363 -21.24379 -19.81355 -19.51200 -18.90562 -18.58981 -17.29271 -16.99838 -16.82357 -16.71747 -16.40916 -15.89591 -15.68226 -15.59745 -15.40473 -15.06132 -14.68536 -14.36633 -14.27775 -13.55008 -13.39902 -13.16845 -12.98388 -12.97890 -12.92908 -12.90231 -12.80305 -12.73321 -12.65170 -12.05630 -11.98591 -11.83931 -11.62030 -11.53561 -11.30977 -10.73808 -10.34992 -10.29179 -10.04035 -9.65878 -8.88439 -7.77642 -5.21955 -1.14704 -0.71663 0.71686 1.28233 1.45749 1.48952 1.55409 1.83113 2.03120 2.49291 2.67676 2.89581 2.95522 3.07502 3.31371 3.55676 3.65097 3.67753 3.81225 3.95116 3.96893 4.05446 4.10353 4.23934 4.35170 4.44005 4.64732 4.69069 4.75414 4.80448 4.85492 4.90377 5.03348 5.03989 5.13002 5.13547 5.25462 5.32463 5.37635 5.46781 5.65873 5.66862 5.82982 5.92272 6.26285 6.32350 6.48275 6.93403 7.11226 7.78855 8.42342 9.23985 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.002549 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.222061 B =10983.834181 C =12273.870191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.067 4.067 3 Si 0.980 3.020 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.077 0.923 9 N -0.628 5.628 10 C 0.151 3.849 11 C -0.120 4.120 12 C -0.095 4.095 13 H 0.095 0.905 14 C 0.141 3.859 15 N -0.696 5.696 16 C 0.575 3.425 17 O -0.554 6.554 18 C 0.043 3.957 19 C 0.120 3.880 20 N -0.437 5.437 21 C 0.076 3.924 22 C -0.105 4.105 23 C -0.067 4.067 24 C -0.085 4.085 25 C -0.092 4.092 26 C 0.055 3.945 27 N -0.400 5.400 28 C 0.138 3.862 29 H 0.248 0.752 30 H -0.010 1.010 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.416 0.584 37 H 0.196 0.804 38 H 0.157 0.843 39 H 0.179 0.821 40 H 0.175 0.825 41 H 0.151 0.849 42 H 0.019 0.981 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.317 -23.885 6.290 28.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.808 3.192 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.095 0.905 9 N -0.354 5.354 10 C 0.026 3.974 11 C -0.159 4.159 12 C -0.114 4.114 13 H 0.113 0.887 14 C 0.018 3.982 15 N -0.347 5.347 16 C 0.359 3.641 17 O -0.432 6.432 18 C -0.112 4.112 19 C -0.054 4.054 20 N -0.151 5.151 21 C -0.049 4.049 22 C -0.124 4.124 23 C -0.087 4.087 24 C -0.105 4.105 25 C -0.111 4.111 26 C -0.072 4.072 27 N -0.118 5.118 28 C 0.013 3.987 29 H 0.057 0.943 30 H 0.008 0.992 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.253 0.747 37 H 0.213 0.787 38 H 0.174 0.826 39 H 0.196 0.804 40 H 0.193 0.807 41 H 0.169 0.831 42 H 0.037 0.963 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 13.021 -23.919 5.652 27.814 hybrid contribution 0.214 1.458 0.188 1.486 sum 13.235 -22.461 5.841 26.716 Atomic orbital electron populations 1.70041 1.06148 1.25123 1.58475 1.25629 0.96674 1.00954 1.02685 0.85131 0.77151 0.78770 0.78152 1.20454 1.21797 1.20358 1.19400 0.90933 0.83952 1.42775 0.90467 1.44820 1.02897 1.00872 1.86806 1.21757 0.83956 0.95010 0.96673 1.22849 0.97625 0.95253 1.00204 1.22293 0.95868 0.93277 1.00003 0.88700 1.21395 0.88781 0.91785 0.96281 1.45879 1.34920 1.27032 1.26842 1.17764 0.81906 0.80671 0.83787 1.90783 1.60033 1.69188 1.23197 1.22262 0.98115 0.97075 0.93773 1.24081 0.91303 0.89896 1.00167 1.68852 1.07670 1.28457 1.10094 1.20283 0.97686 0.94746 0.92200 1.21134 0.93864 1.00483 0.96942 1.21642 0.98889 0.95331 0.92811 1.21564 0.94217 0.93694 1.01031 1.21200 0.96330 1.01198 0.92385 1.20040 0.94757 0.94286 0.98161 1.68444 1.06854 1.27812 1.08731 1.21477 0.94782 0.84877 0.97595 0.94276 0.99190 0.90963 0.91588 0.88966 0.89442 0.91902 0.74722 0.78715 0.82575 0.80371 0.80731 0.83094 0.96274 0.95818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.85 10.09 21.65 0.22 -56.64 16 2 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 3 Si 0.98 46.03 29.55 68.60 2.03 48.06 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.24 -13.76 10.27 84.03 0.86 -12.90 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.63 -32.64 3.39 -691.99 -2.35 -34.99 16 10 C 0.15 7.41 5.89 86.86 0.51 7.92 16 11 C -0.12 -4.29 6.53 31.99 0.21 -4.08 16 12 C -0.10 -3.03 3.02 -9.61 -0.03 -3.06 16 13 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 14 C 0.14 3.94 4.99 86.38 0.43 4.37 16 15 N -0.70 -18.68 5.39 -465.60 -2.51 -21.18 16 16 C 0.57 16.28 7.82 86.90 0.68 16.96 16 17 O -0.55 -18.05 16.32 -3.74 -0.06 -18.11 16 18 C 0.04 1.11 6.76 42.32 0.29 1.40 16 19 C 0.12 2.84 10.75 85.35 0.92 3.76 16 20 N -0.44 -10.16 10.45 -187.21 -1.96 -12.12 16 21 C 0.08 1.58 6.60 40.35 0.27 1.84 16 22 C -0.11 -1.36 9.98 22.33 0.22 -1.14 16 23 C -0.07 -0.46 9.95 22.07 0.22 -0.24 16 24 C -0.09 -0.67 9.95 22.05 0.22 -0.46 16 25 C -0.09 -1.36 9.99 22.38 0.22 -1.14 16 26 C 0.05 1.19 6.60 40.48 0.27 1.45 16 27 N -0.40 -9.95 9.64 -177.28 -1.71 -11.65 16 28 C 0.14 5.62 6.52 86.73 0.57 6.18 16 29 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 30 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H 0.07 4.07 5.87 -2.39 -0.01 4.05 16 32 H 0.07 2.34 8.05 -2.39 -0.02 2.32 16 33 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.06 1.94 8.06 -2.39 -0.02 1.92 16 36 H 0.42 10.53 7.66 -92.71 -0.71 9.82 16 37 H 0.20 4.01 7.62 -2.91 -0.02 3.99 16 38 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.18 -0.16 8.06 -2.91 -0.02 -0.18 16 40 H 0.18 0.16 8.06 -2.91 -0.02 0.14 16 41 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 42 H 0.02 0.80 7.77 -2.38 -0.02 0.78 16 43 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -74.11 361.36 0.31 -73.79 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.33 Total: 15.34 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 6.32 Total: 17.50 kcal Atomic # 7 Polarization: -128.28 SS G_CDS: -8.31 Total: -136.58 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.06 Total: -18.11 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -74.11 0.31 -73.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028596256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.651 kcal (2) G-P(sol) polarization free energy of solvation -74.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds