Wall clock time and date at job start Tue Mar 31 2020 14:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48497 * 109.47563 * 240.00202 * 3 2 1 5 5 H 1.48504 * 109.46777 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47166 * 119.99925 * 3 2 1 7 7 C 1.38813 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00306 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64618 * 359.69358 * 9 7 2 11 11 C 1.54327 * 107.26774 * 179.20447 * 10 9 7 12 12 C 1.55155 * 102.94571 * 337.80617 * 11 10 9 13 13 H 1.08997 * 111.00368 * 277.43464 * 12 11 10 14 14 C 1.52996 * 111.00532 * 153.57522 * 12 11 10 15 15 N 1.46497 * 109.47114 * 181.35298 * 14 12 11 16 16 C 1.34775 * 119.99944 * 180.02562 * 15 14 12 17 17 O 1.21544 * 120.00146 * 0.02562 * 16 15 14 18 18 C 1.47904 * 120.00071 * 179.97438 * 16 15 14 19 19 N 1.32136 * 120.03124 * 0.02562 * 18 16 15 20 20 C 1.31975 * 122.76966 * 179.97438 * 19 18 16 21 21 C 1.37780 * 121.72959 * 359.97438 * 20 19 18 22 22 C 1.40386 * 118.72470 * 0.02562 * 21 20 19 23 23 C 1.40648 * 122.27656 * 180.02562 * 22 21 20 24 24 C 1.36644 * 117.94983 * 179.29292 * 23 22 21 25 25 C 1.39398 * 119.92298 * 0.63307 * 24 23 22 26 26 N 1.31201 * 121.85807 * 359.57630 * 25 24 23 27 27 C 1.33260 * 121.21987 * 359.97438 * 26 25 24 28 28 C 1.47426 * 125.64875 * 180.02562 * 9 7 2 29 29 H 0.97001 * 119.99407 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.88316 * 298.61939 * 10 9 7 31 31 H 1.09002 * 109.88101 * 59.78834 * 10 9 7 32 32 H 1.08999 * 110.71564 * 219.44370 * 11 10 9 33 33 H 1.09000 * 110.86856 * 96.24526 * 11 10 9 34 34 H 1.09002 * 109.47242 * 301.35140 * 14 12 11 35 35 H 1.09002 * 109.46968 * 61.35264 * 14 12 11 36 36 H 0.97000 * 119.99896 * 359.97438 * 15 14 12 37 37 H 1.07999 * 119.13871 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.63674 * 179.97438 * 21 20 19 39 39 H 1.08004 * 121.01739 * 359.97438 * 23 22 21 40 40 H 1.08004 * 120.03609 * 180.19118 * 24 23 22 41 41 H 1.08003 * 119.06886 * 179.55478 * 25 24 23 42 42 H 1.09002 * 110.36518 * 322.70049 * 28 9 7 43 43 H 1.08995 * 110.36673 * 84.91158 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0064 11 6 -0.4487 -4.0441 -0.0169 12 6 0.8490 -4.6570 -0.6067 13 1 0.8490 -4.5986 -1.6951 14 6 1.0361 -6.1010 -0.1371 15 7 2.2848 -6.6352 -0.6863 16 6 2.6586 -7.8990 -0.4047 17 8 1.9595 -8.5958 0.3046 18 6 3.9190 -8.4385 -0.9596 19 7 4.6792 -7.6818 -1.7312 20 6 5.8136 -8.1075 -2.2543 21 6 6.2833 -9.3825 -2.0262 22 6 5.5284 -10.2446 -1.2153 23 6 5.9375 -11.5604 -0.9330 24 6 5.1417 -12.3182 -0.1208 25 6 3.9589 -11.7843 0.3883 26 7 3.5800 -10.5577 0.1179 27 6 4.3147 -9.7634 -0.6601 28 6 1.9333 -3.7312 -0.0005 29 1 -0.4849 0.8401 -0.0004 30 1 -0.5503 -2.0832 0.9095 31 1 -0.5617 -2.0533 -0.8759 32 1 -1.3017 -4.2523 -0.6628 33 1 -0.6290 -4.4190 0.9906 34 1 1.0780 -6.1265 0.9518 35 1 0.1986 -6.7069 -0.4828 36 1 2.8421 -6.0795 -1.2533 37 1 6.3890 -7.4389 -2.8775 38 1 7.2140 -9.7126 -2.4635 39 1 6.8579 -11.9557 -1.3367 40 1 5.4252 -13.3320 0.1206 41 1 3.3367 -12.3979 1.0230 42 1 2.8303 -3.7416 -0.6198 43 1 2.1723 -4.0394 1.0172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028600293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:38 Heat of formation + Delta-G solvation = 65.775957 kcal Electronic energy + Delta-G solvation = -26374.083452 eV Core-core repulsion = 22613.279649 eV Total energy + Delta-G solvation = -3760.803804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.62315 -39.39419 -38.26864 -37.50434 -34.54868 -34.06307 -32.47477 -31.83203 -30.93798 -29.66555 -28.20525 -26.05081 -25.26716 -24.46608 -24.00205 -22.88048 -20.81385 -19.93347 -19.78289 -18.95375 -17.91590 -17.86663 -16.79984 -16.45900 -15.86493 -15.62290 -15.14294 -14.90227 -14.71118 -14.58688 -14.36811 -14.08774 -13.62095 -13.52254 -13.23864 -13.12788 -12.78689 -12.59641 -12.26158 -11.92193 -11.66405 -11.31924 -11.15070 -10.85471 -10.73691 -10.44738 -10.27905 -10.17080 -10.07347 -9.88871 -9.78600 -9.74342 -9.59443 -9.37408 -8.92430 -8.70715 -8.54590 -6.77174 -5.65943 -2.99044 -0.41876 0.30197 1.29645 2.41908 3.05843 3.08315 3.43929 3.47846 3.49312 3.79822 3.82603 3.91167 4.07834 4.22195 4.34535 4.39886 4.54162 4.74550 4.93762 5.00950 5.13090 5.19991 5.25439 5.33691 5.47160 5.50695 5.60737 5.65992 5.75838 5.89871 5.98410 6.13175 6.14296 6.17454 6.42425 6.54921 6.60224 6.61639 6.77569 7.00106 7.27395 7.52366 7.61324 7.69578 7.75274 7.88105 8.31837 8.34104 9.27780 9.88219 10.54852 11.45869 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022012 B = 0.002428 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.714605 B =11528.967343 C =12494.115505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.178 3.822 11 C -0.135 4.135 12 C -0.117 4.117 13 H 0.080 0.920 14 C 0.133 3.867 15 N -0.706 5.706 16 C 0.561 3.439 17 O -0.500 6.500 18 C 0.146 3.854 19 N -0.441 5.441 20 C 0.078 3.922 21 C -0.125 4.125 22 C -0.085 4.085 23 C -0.064 4.064 24 C -0.156 4.156 25 C 0.131 3.869 26 N -0.420 5.420 27 C 0.106 3.894 28 C 0.142 3.858 29 H 0.252 0.748 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.410 0.590 37 H 0.168 0.832 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.166 0.834 42 H 0.037 0.963 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.179 -25.949 -4.399 29.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.137 4.137 13 H 0.099 0.901 14 C 0.010 3.990 15 N -0.358 5.358 16 C 0.343 3.657 17 O -0.372 6.372 18 C -0.008 4.008 19 N -0.154 5.154 20 C -0.069 4.069 21 C -0.145 4.145 22 C -0.092 4.092 23 C -0.090 4.090 24 C -0.177 4.177 25 C -0.043 4.043 26 N -0.128 5.128 27 C -0.019 4.019 28 C 0.016 3.984 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.247 0.753 37 H 0.185 0.815 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.183 0.817 42 H 0.055 0.945 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 10.610 -24.863 -3.809 27.299 hybrid contribution 1.980 -0.048 -0.508 2.045 sum 12.590 -24.911 -4.317 28.243 Atomic orbital electron populations 1.69958 1.04858 1.25055 1.57184 1.24801 0.95726 0.97638 1.02412 0.86198 0.78430 0.83266 0.77857 1.21204 1.21638 1.21234 1.19018 0.90392 0.82481 1.43649 0.90554 1.44481 1.01747 0.99880 1.87170 1.21144 0.84327 0.88185 1.01057 1.22860 0.95447 0.99363 0.99677 1.22610 0.98552 0.91952 1.00597 0.90135 1.21445 0.84950 0.93821 0.98813 1.45941 1.24959 1.13186 1.51755 1.17568 0.84092 0.82382 0.81614 1.90856 1.52349 1.58047 1.35969 1.21596 0.95305 0.89171 0.94703 1.67388 1.05205 1.36305 1.06468 1.22635 0.92147 0.94390 0.97679 1.22399 1.00277 0.94498 0.97361 1.18984 0.95695 0.95811 0.98709 1.21427 0.99611 0.91897 0.96068 1.22137 0.95971 1.01696 0.97905 1.23352 0.93771 0.91596 0.95610 1.68322 1.30083 1.04015 1.10353 1.19481 0.91730 0.94764 0.95947 1.21570 0.94041 0.86043 0.96790 0.93758 0.93957 0.93552 0.91989 0.92185 0.91168 0.91473 0.75349 0.81461 0.83564 0.83713 0.83890 0.81721 0.94502 0.96327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.56 10.31 55.49 0.57 -26.99 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.23 -6.45 10.28 -15.06 -0.15 -6.61 16 8 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 9 N -0.61 -15.81 3.39 -170.05 -0.58 -16.39 16 10 C 0.18 4.39 5.37 -3.06 -0.02 4.37 16 11 C -0.13 -2.53 6.42 -24.90 -0.16 -2.69 16 12 C -0.12 -2.05 3.11 -88.46 -0.27 -2.33 16 13 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 14 C 0.13 2.08 5.12 -4.05 -0.02 2.06 16 15 N -0.71 -10.65 5.40 -61.23 -0.33 -10.98 16 16 C 0.56 9.05 7.81 -12.30 -0.10 8.95 16 17 O -0.50 -9.32 15.21 5.33 0.08 -9.23 16 18 C 0.15 2.06 6.81 -82.54 -0.56 1.50 16 19 N -0.44 -5.44 9.48 -9.55 -0.09 -5.53 16 20 C 0.08 0.69 11.12 -17.66 -0.20 0.49 16 21 C -0.12 -0.92 9.93 -38.94 -0.39 -1.31 16 22 C -0.08 -0.80 5.75 -106.79 -0.61 -1.42 16 23 C -0.06 -0.41 9.94 -39.25 -0.39 -0.80 16 24 C -0.16 -0.94 10.03 -39.73 -0.40 -1.34 16 25 C 0.13 1.16 11.14 -17.39 -0.19 0.96 16 26 N -0.42 -5.64 8.49 -10.75 -0.09 -5.73 16 27 C 0.11 1.38 6.61 -84.62 -0.56 0.82 16 28 C 0.14 2.98 6.41 -2.52 -0.02 2.96 16 29 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 31 H 0.05 1.26 7.38 -51.93 -0.38 0.87 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 34 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.41 5.85 7.68 -40.82 -0.31 5.53 16 37 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.15 0.43 8.06 -52.48 -0.42 0.01 16 40 H 0.14 0.36 8.06 -52.48 -0.42 -0.06 16 41 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 LS Contribution 360.22 15.07 5.43 5.43 Total: -1.00 -35.85 360.22 -9.86 -45.71 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.69 Total: 1.04 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -4.14 Total: 5.25 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -0.52 Total: -65.61 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.23 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.85 -9.86 -45.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028600293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.486 kcal (2) G-P(sol) polarization free energy of solvation -35.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds