Wall clock time and date at job start Tue Mar 31 2020 14:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48497 * 109.47563 * 240.00202 * 3 2 1 5 5 H 1.48504 * 109.46777 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47166 * 119.99925 * 3 2 1 7 7 C 1.38813 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00306 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64618 * 359.69358 * 9 7 2 11 11 C 1.54327 * 107.26774 * 179.20447 * 10 9 7 12 12 C 1.55155 * 102.94571 * 337.80617 * 11 10 9 13 13 H 1.08997 * 111.00368 * 277.43464 * 12 11 10 14 14 C 1.52996 * 111.00532 * 153.57522 * 12 11 10 15 15 N 1.46497 * 109.47114 * 181.35298 * 14 12 11 16 16 C 1.34775 * 119.99944 * 180.02562 * 15 14 12 17 17 O 1.21544 * 120.00146 * 0.02562 * 16 15 14 18 18 C 1.47904 * 120.00071 * 179.97438 * 16 15 14 19 19 N 1.32136 * 120.03124 * 0.02562 * 18 16 15 20 20 C 1.31975 * 122.76966 * 179.97438 * 19 18 16 21 21 C 1.37780 * 121.72959 * 359.97438 * 20 19 18 22 22 C 1.40386 * 118.72470 * 0.02562 * 21 20 19 23 23 C 1.40648 * 122.27656 * 180.02562 * 22 21 20 24 24 C 1.36644 * 117.94983 * 179.29292 * 23 22 21 25 25 C 1.39398 * 119.92298 * 0.63307 * 24 23 22 26 26 N 1.31201 * 121.85807 * 359.57630 * 25 24 23 27 27 C 1.33260 * 121.21987 * 359.97438 * 26 25 24 28 28 C 1.47426 * 125.64875 * 180.02562 * 9 7 2 29 29 H 0.97001 * 119.99407 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.88316 * 298.61939 * 10 9 7 31 31 H 1.09002 * 109.88101 * 59.78834 * 10 9 7 32 32 H 1.08999 * 110.71564 * 219.44370 * 11 10 9 33 33 H 1.09000 * 110.86856 * 96.24526 * 11 10 9 34 34 H 1.09002 * 109.47242 * 301.35140 * 14 12 11 35 35 H 1.09002 * 109.46968 * 61.35264 * 14 12 11 36 36 H 0.97000 * 119.99896 * 359.97438 * 15 14 12 37 37 H 1.07999 * 119.13871 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.63674 * 179.97438 * 21 20 19 39 39 H 1.08004 * 121.01739 * 359.97438 * 23 22 21 40 40 H 1.08004 * 120.03609 * 180.19118 * 24 23 22 41 41 H 1.08003 * 119.06886 * 179.55478 * 25 24 23 42 42 H 1.09002 * 110.36518 * 322.70049 * 28 9 7 43 43 H 1.08995 * 110.36673 * 84.91158 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0064 11 6 -0.4487 -4.0441 -0.0169 12 6 0.8490 -4.6570 -0.6067 13 1 0.8490 -4.5986 -1.6951 14 6 1.0361 -6.1010 -0.1371 15 7 2.2848 -6.6352 -0.6863 16 6 2.6586 -7.8990 -0.4047 17 8 1.9595 -8.5958 0.3046 18 6 3.9190 -8.4385 -0.9596 19 7 4.6792 -7.6818 -1.7312 20 6 5.8136 -8.1075 -2.2543 21 6 6.2833 -9.3825 -2.0262 22 6 5.5284 -10.2446 -1.2153 23 6 5.9375 -11.5604 -0.9330 24 6 5.1417 -12.3182 -0.1208 25 6 3.9589 -11.7843 0.3883 26 7 3.5800 -10.5577 0.1179 27 6 4.3147 -9.7634 -0.6601 28 6 1.9333 -3.7312 -0.0005 29 1 -0.4849 0.8401 -0.0004 30 1 -0.5503 -2.0832 0.9095 31 1 -0.5617 -2.0533 -0.8759 32 1 -1.3017 -4.2523 -0.6628 33 1 -0.6290 -4.4190 0.9906 34 1 1.0780 -6.1265 0.9518 35 1 0.1986 -6.7069 -0.4828 36 1 2.8421 -6.0795 -1.2533 37 1 6.3890 -7.4389 -2.8775 38 1 7.2140 -9.7126 -2.4635 39 1 6.8579 -11.9557 -1.3367 40 1 5.4252 -13.3320 0.1206 41 1 3.3367 -12.3979 1.0230 42 1 2.8303 -3.7416 -0.6198 43 1 2.1723 -4.0394 1.0172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028600293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:37 Heat of formation + Delta-G solvation = 40.295880 kcal Electronic energy + Delta-G solvation = -26375.188351 eV Core-core repulsion = 22613.279649 eV Total energy + Delta-G solvation = -3761.908703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.33407 -40.54183 -39.26030 -38.91659 -36.03091 -34.75419 -34.28299 -32.51506 -31.92441 -31.30270 -29.84541 -27.48183 -26.49251 -25.36663 -25.07445 -23.98167 -22.15430 -21.54380 -21.24901 -19.78555 -18.94515 -18.60785 -18.55462 -17.35636 -17.09829 -16.68275 -16.64108 -16.22286 -15.66646 -15.61809 -15.46917 -15.28718 -14.99235 -14.57035 -14.19245 -14.00317 -13.97635 -13.83876 -13.70663 -13.38570 -13.12521 -13.01601 -12.77220 -12.60609 -12.06311 -11.94224 -11.85121 -11.81373 -11.54614 -11.46743 -11.31934 -10.96307 -10.69387 -10.37030 -10.19231 -10.09988 -9.46590 -8.89647 -7.84217 -5.20049 -1.11030 -0.33086 0.64733 1.45420 1.49412 1.55639 1.63915 2.01936 2.17816 2.50160 3.04404 3.06383 3.21480 3.33418 3.43151 3.59927 3.65769 3.72707 3.83295 3.95158 4.02405 4.02570 4.24085 4.29364 4.43902 4.48538 4.58229 4.62197 4.65100 4.71014 4.78645 4.90727 4.96022 5.05612 5.07791 5.11805 5.33719 5.34805 5.45214 5.45655 5.62724 5.68289 5.77984 6.20544 6.40821 6.65356 6.93756 7.10920 7.18746 7.78179 8.43231 9.26234 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022012 B = 0.002428 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.714605 B =11528.967343 C =12494.115505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.981 3.019 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.184 3.816 11 C -0.121 4.121 12 C -0.095 4.095 13 H 0.088 0.912 14 C 0.145 3.855 15 N -0.704 5.704 16 C 0.559 3.441 17 O -0.537 6.537 18 C 0.096 3.904 19 N -0.453 5.453 20 C 0.053 3.947 21 C -0.088 4.088 22 C -0.106 4.106 23 C -0.050 4.050 24 C -0.153 4.153 25 C 0.129 3.871 26 N -0.485 5.485 27 C 0.084 3.916 28 C 0.139 3.861 29 H 0.247 0.753 30 H 0.005 0.995 31 H 0.014 0.986 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.414 0.586 37 H 0.198 0.802 38 H 0.196 0.804 39 H 0.191 0.809 40 H 0.186 0.814 41 H 0.183 0.817 42 H 0.044 0.956 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.482 -28.642 -5.650 33.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.809 3.191 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.100 0.900 9 N -0.355 5.355 10 C 0.059 3.941 11 C -0.160 4.160 12 C -0.115 4.115 13 H 0.106 0.894 14 C 0.021 3.979 15 N -0.356 5.356 16 C 0.344 3.656 17 O -0.412 6.412 18 C -0.055 4.055 19 N -0.166 5.166 20 C -0.094 4.094 21 C -0.109 4.109 22 C -0.113 4.113 23 C -0.076 4.076 24 C -0.173 4.173 25 C -0.045 4.045 26 N -0.194 5.194 27 C -0.040 4.040 28 C 0.014 3.986 29 H 0.056 0.944 30 H 0.023 0.977 31 H 0.033 0.967 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.251 0.749 37 H 0.215 0.785 38 H 0.213 0.787 39 H 0.208 0.792 40 H 0.203 0.797 41 H 0.200 0.800 42 H 0.063 0.937 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 13.929 -27.579 -5.064 31.309 hybrid contribution 1.101 0.628 -0.123 1.273 sum 15.030 -26.951 -5.187 31.292 Atomic orbital electron populations 1.70191 1.06322 1.25350 1.58245 1.25694 0.96679 1.01134 1.02622 0.85119 0.77115 0.78628 0.78264 1.20020 1.21997 1.20440 1.19440 0.91009 0.83787 1.43104 0.90043 1.44811 1.02556 1.01110 1.87018 1.20924 0.83727 0.91734 0.97752 1.22728 0.96979 0.95004 1.01304 1.22408 0.96227 0.92184 1.00672 0.89364 1.21228 0.85873 0.92511 0.98244 1.45871 1.24726 1.13261 1.51770 1.17987 0.84760 0.82000 0.80887 1.90805 1.53822 1.58876 1.37699 1.21201 0.95630 0.90630 0.98021 1.67268 1.06297 1.36832 1.06168 1.23243 0.91624 0.96084 0.98444 1.22956 1.00629 0.93016 0.94258 1.19374 0.94888 0.97767 0.99288 1.21990 1.00676 0.90161 0.94768 1.22536 0.94440 1.03412 0.96958 1.23917 0.95073 0.90545 0.94929 1.68248 1.32254 1.06106 1.12758 1.19643 0.93308 0.94464 0.96628 1.21704 0.95284 0.84592 0.96984 0.94392 0.97658 0.96734 0.89405 0.90960 0.92068 0.90405 0.74940 0.78495 0.78684 0.79174 0.79691 0.79992 0.93738 0.96643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.92 10.31 21.65 0.22 -58.70 16 2 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 3 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.24 -14.19 10.28 84.03 0.86 -13.32 16 8 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 9 N -0.63 -33.65 3.39 -691.93 -2.35 -36.00 16 10 C 0.18 9.42 5.37 86.73 0.47 9.89 16 11 C -0.12 -4.57 6.42 31.78 0.20 -4.36 16 12 C -0.10 -3.32 3.11 -9.40 -0.03 -3.35 16 13 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 14 C 0.15 4.55 5.12 86.38 0.44 4.99 16 15 N -0.70 -21.84 5.40 -465.93 -2.51 -24.35 16 16 C 0.56 18.99 7.81 86.80 0.68 19.67 16 17 O -0.54 -21.22 15.21 -3.85 -0.06 -21.28 16 18 C 0.10 2.82 6.81 42.46 0.29 3.11 16 19 N -0.45 -11.13 9.48 -184.13 -1.75 -12.88 16 20 C 0.05 0.83 11.12 84.56 0.94 1.77 16 21 C -0.09 -0.97 9.93 22.68 0.23 -0.74 16 22 C -0.11 -1.73 5.75 -21.27 -0.12 -1.85 16 23 C -0.05 -0.42 9.94 22.49 0.22 -0.20 16 24 C -0.15 -1.29 10.03 22.18 0.22 -1.07 16 25 C 0.13 2.14 11.14 85.07 0.95 3.09 16 26 N -0.48 -13.36 8.49 -187.91 -1.60 -14.96 16 27 C 0.08 2.20 6.61 40.63 0.27 2.47 16 28 C 0.14 5.93 6.41 86.86 0.56 6.48 16 29 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 30 H 0.01 0.30 7.51 -2.39 -0.02 0.28 16 31 H 0.01 0.82 7.38 -2.39 -0.02 0.80 16 32 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.07 2.55 8.04 -2.39 -0.02 2.53 16 34 H 0.06 2.05 8.10 -2.39 -0.02 2.03 16 35 H 0.08 2.31 8.14 -2.39 -0.02 2.30 16 36 H 0.41 12.06 7.68 -92.71 -0.71 11.35 16 37 H 0.20 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.20 0.14 8.06 -2.91 -0.02 0.12 16 39 H 0.19 -0.19 8.06 -2.91 -0.02 -0.21 16 40 H 0.19 -0.05 8.06 -2.91 -0.02 -0.08 16 41 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 42 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.02 0.68 8.01 -2.39 -0.02 0.66 16 Total: -1.00 -84.95 360.22 0.96 -83.99 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.33 Total: 12.23 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: 6.64 Total: 23.04 kcal Atomic # 7 Polarization: -138.90 SS G_CDS: -7.98 Total: -146.88 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.06 Total: -21.28 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -84.95 0.96 -83.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028600293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.287 kcal (2) G-P(sol) polarization free energy of solvation -84.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds