Wall clock time and date at job start Tue Mar 31 2020 14:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99481 * 2 1 4 4 H 1.48499 * 109.46921 * 269.99437 * 3 2 1 5 5 H 1.48491 * 109.47345 * 29.99708 * 3 2 1 6 6 H 1.48503 * 109.46612 * 150.00017 * 3 2 1 7 7 C 1.38802 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00518 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00056 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.64637 * 359.97438 * 9 7 2 11 11 C 1.54914 * 104.83011 * 155.90144 * 10 9 7 12 12 C 1.55158 * 101.58024 * 37.00996 * 11 10 9 13 13 H 1.08997 * 110.71879 * 83.03960 * 12 11 10 14 14 C 1.52997 * 110.71889 * 206.13064 * 12 11 10 15 15 N 1.46506 * 109.47289 * 182.55931 * 14 12 11 16 16 C 1.34774 * 120.00072 * 180.02562 * 15 14 12 17 17 O 1.21546 * 120.00279 * 0.02562 * 16 15 14 18 18 C 1.47896 * 119.99644 * 180.02562 * 16 15 14 19 19 N 1.32133 * 120.03717 * 359.97438 * 18 16 15 20 20 C 1.31972 * 122.77099 * 180.02562 * 19 18 16 21 21 C 1.37779 * 121.72916 * 0.02562 * 20 19 18 22 22 C 1.40382 * 118.72746 * 359.97438 * 21 20 19 23 23 C 1.40644 * 122.28160 * 180.02562 * 22 21 20 24 24 C 1.36646 * 117.95185 * 179.97438 * 23 22 21 25 25 C 1.39400 * 119.92438 * 359.97438 * 24 23 22 26 26 N 1.31204 * 121.85454 * 359.97438 * 25 24 23 27 27 C 1.33265 * 121.22047 * 359.75133 * 26 25 24 28 28 C 1.47320 * 125.61599 * 180.19390 * 9 7 2 29 29 H 0.97005 * 120.00182 * 0.02562 * 1 2 3 30 30 H 1.09000 * 110.36749 * 37.06850 * 10 9 7 31 31 H 1.09001 * 110.45864 * 274.78812 * 10 9 7 32 32 H 1.09001 * 111.00531 * 278.93476 * 11 10 9 33 33 H 1.09001 * 111.03720 * 155.09842 * 11 10 9 34 34 H 1.09001 * 109.47289 * 62.55803 * 14 12 11 35 35 H 1.09004 * 109.47261 * 302.56059 * 14 12 11 36 36 H 0.97001 * 119.99251 * 0.02562 * 15 14 12 37 37 H 1.08003 * 119.13864 * 180.02562 * 20 19 18 38 38 H 1.08000 * 120.63924 * 179.97438 * 21 20 19 39 39 H 1.07994 * 121.02856 * 0.02562 * 23 22 21 40 40 H 1.08004 * 120.04010 * 180.02562 * 24 23 22 41 41 H 1.07999 * 119.07444 * 180.02562 * 25 24 23 42 42 H 1.08991 * 110.06396 * 61.68337 * 28 9 7 43 43 H 1.09005 * 109.84901 * 300.41965 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5331 0.0005 11 6 -0.4015 -3.9325 -0.6109 12 6 0.7786 -4.7524 -0.0255 13 1 0.5447 -5.1003 0.9807 14 6 1.1234 -5.9316 -0.9373 15 7 2.1979 -6.7208 -0.3298 16 6 2.6688 -7.8154 -0.9596 17 8 2.2024 -8.1476 -2.0317 18 6 3.7531 -8.6123 -0.3460 19 7 4.2610 -8.2515 0.8192 20 6 5.2291 -8.9221 1.4149 21 6 5.7787 -10.0538 0.8531 22 6 5.2893 -10.4981 -0.3853 23 6 5.7951 -11.6437 -1.0256 24 6 5.2531 -11.9965 -2.2294 25 6 4.2308 -11.2279 -2.7838 26 7 3.7622 -10.1607 -2.1813 27 6 4.2432 -9.7654 -1.0031 28 6 1.9339 -3.7298 0.0051 29 1 -0.4851 0.8401 -0.0004 30 1 -0.5992 -1.7591 -0.6154 31 1 -0.5290 -2.4858 1.0182 32 1 -0.3518 -3.8987 -1.6993 33 1 -1.3589 -4.3333 -0.2779 34 1 1.4511 -5.5573 -1.9071 35 1 0.2417 -6.5589 -1.0691 36 1 2.5703 -6.4554 0.5256 37 1 5.6004 -8.5746 2.3677 38 1 6.5707 -10.5888 1.3559 39 1 6.5868 -12.2270 -0.5794 40 1 5.6158 -12.8703 -2.7503 41 1 3.8121 -11.5195 -3.7356 42 1 2.5276 -3.8681 0.9086 43 1 2.5625 -3.8542 -0.8767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028600294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:41 Heat of formation + Delta-G solvation = 67.096710 kcal Electronic energy + Delta-G solvation = -26371.264743 eV Core-core repulsion = 22610.518212 eV Total energy + Delta-G solvation = -3760.746532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.62656 -39.39515 -38.27242 -37.49246 -34.54831 -34.06535 -32.48782 -31.83449 -30.93874 -29.66047 -28.18226 -26.05351 -25.27468 -24.46959 -24.00318 -22.86542 -20.83708 -20.04547 -19.63715 -18.95158 -17.90702 -17.86661 -16.81771 -16.48146 -15.85923 -15.62482 -15.17575 -14.94177 -14.71685 -14.62061 -14.33251 -14.11161 -13.61714 -13.52586 -13.26264 -13.08422 -12.61573 -12.60021 -12.42693 -11.70440 -11.62449 -11.42509 -11.15878 -10.90158 -10.75916 -10.43055 -10.30029 -10.18255 -10.05721 -9.93057 -9.75447 -9.74598 -9.51540 -9.33968 -8.92497 -8.70841 -8.60022 -6.77553 -5.60379 -3.01590 -0.42226 0.29866 1.29464 2.41511 3.05916 3.08397 3.43431 3.48086 3.50172 3.79565 3.82340 3.90741 4.07550 4.21868 4.34279 4.39766 4.53280 4.73910 4.93539 5.00496 5.12710 5.19992 5.26272 5.35182 5.46843 5.48635 5.59116 5.65659 5.76925 5.89452 5.97538 6.14850 6.17218 6.20001 6.42425 6.55251 6.64986 6.66260 6.81400 6.99600 7.26716 7.52313 7.57397 7.67847 7.75010 7.91030 8.34249 8.41821 9.27519 9.88294 10.53736 11.43670 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021945 B = 0.002380 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.632940 B =11763.340159 C =12331.843998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.220 4.220 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.114 4.114 13 H 0.076 0.924 14 C 0.133 3.867 15 N -0.707 5.707 16 C 0.561 3.439 17 O -0.499 6.499 18 C 0.146 3.854 19 N -0.442 5.442 20 C 0.077 3.923 21 C -0.125 4.125 22 C -0.085 4.085 23 C -0.064 4.064 24 C -0.156 4.156 25 C 0.131 3.869 26 N -0.420 5.420 27 C 0.106 3.894 28 C 0.141 3.859 29 H 0.251 0.749 30 H 0.107 0.893 31 H 0.012 0.988 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.410 0.590 37 H 0.168 0.832 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.166 0.834 42 H 0.020 0.980 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.035 -26.908 0.324 29.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.348 4.348 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.133 4.133 13 H 0.095 0.905 14 C 0.009 3.991 15 N -0.359 5.359 16 C 0.343 3.657 17 O -0.371 6.371 18 C -0.007 4.007 19 N -0.154 5.154 20 C -0.069 4.069 21 C -0.145 4.145 22 C -0.092 4.092 23 C -0.090 4.090 24 C -0.177 4.177 25 C -0.043 4.043 26 N -0.128 5.128 27 C -0.019 4.019 28 C 0.015 3.985 29 H 0.062 0.938 30 H 0.124 0.876 31 H 0.030 0.970 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.246 0.754 37 H 0.185 0.815 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.183 0.817 42 H 0.038 0.962 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 9.680 -25.568 -0.262 27.341 hybrid contribution 1.875 -0.390 0.606 2.009 sum 11.556 -25.959 0.344 28.417 Atomic orbital electron populations 1.69802 1.04861 1.24680 1.57869 1.24782 0.95736 0.97683 1.02634 0.86073 0.78493 0.83395 0.77556 1.21626 1.21688 1.20791 1.19086 0.90503 0.82533 1.42718 0.90567 1.44586 1.01971 0.99730 1.86835 1.21923 0.84650 0.92518 0.98175 1.23005 0.95503 0.98570 1.00325 1.22440 0.98263 0.93967 0.98678 0.90523 1.21513 0.89036 0.91572 0.96933 1.45953 1.38363 1.26582 1.24994 1.17569 0.82050 0.81086 0.84986 1.90860 1.57552 1.68746 1.19961 1.21597 0.96023 0.92421 0.90687 1.67380 1.09557 1.30518 1.07982 1.22626 0.92382 0.91957 0.99924 1.22395 1.00273 0.97564 0.94305 1.18981 0.97031 0.96855 0.96326 1.21423 0.98515 0.94339 0.94739 1.22141 0.97705 1.01366 0.96475 1.23358 0.92149 0.89468 0.99332 1.68328 1.25010 1.13014 1.06412 1.19485 0.94128 0.95519 0.92794 1.21390 0.93479 0.85832 0.97833 0.93784 0.87556 0.97045 0.91812 0.92120 0.91030 0.91443 0.75445 0.81486 0.83568 0.83710 0.83878 0.81706 0.96189 0.95717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.35 10.09 55.49 0.56 -26.79 16 2 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.22 -6.28 10.28 -15.06 -0.15 -6.43 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.61 -15.88 3.40 -169.83 -0.58 -16.45 16 10 C 0.15 3.76 5.89 -2.53 -0.01 3.74 16 11 C -0.13 -2.58 6.54 -24.58 -0.16 -2.74 16 12 C -0.11 -2.01 2.98 -88.79 -0.26 -2.27 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 14 C 0.13 2.12 5.00 -4.04 -0.02 2.10 16 15 N -0.71 -10.74 5.42 -61.23 -0.33 -11.07 16 16 C 0.56 9.13 7.81 -12.31 -0.10 9.04 16 17 O -0.50 -9.43 15.21 5.33 0.08 -9.35 16 18 C 0.15 2.07 6.81 -82.55 -0.56 1.51 16 19 N -0.44 -5.41 9.48 -9.55 -0.09 -5.50 16 20 C 0.08 0.68 11.12 -17.66 -0.20 0.48 16 21 C -0.12 -0.91 9.93 -38.94 -0.39 -1.30 16 22 C -0.08 -0.80 5.75 -106.79 -0.61 -1.42 16 23 C -0.06 -0.41 9.94 -39.25 -0.39 -0.80 16 24 C -0.16 -0.95 10.03 -39.72 -0.40 -1.35 16 25 C 0.13 1.17 11.14 -17.39 -0.19 0.98 16 26 N -0.42 -5.69 8.49 -10.75 -0.09 -5.78 16 27 C 0.11 1.39 6.61 -84.62 -0.56 0.83 16 28 C 0.14 2.99 6.67 -2.90 -0.02 2.97 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.11 2.95 5.88 -51.93 -0.31 2.64 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 1.21 8.05 -51.93 -0.42 0.80 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.24 8.00 -51.93 -0.42 0.82 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.41 5.79 7.75 -40.82 -0.32 5.47 16 37 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 39 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 40 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 41 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.02 0.54 7.73 -51.93 -0.40 0.14 16 LS Contribution 359.49 15.07 5.42 5.42 Total: -1.00 -35.71 359.49 -9.81 -45.52 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.63 Total: 1.69 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -4.13 Total: 4.86 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: -0.53 Total: -65.60 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.35 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.71 -9.81 -45.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028600294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.620 kcal (2) G-P(sol) polarization free energy of solvation -35.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds