Wall clock time and date at job start Tue Mar 31 2020 14:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99481 * 2 1 4 4 H 1.48499 * 109.46921 * 269.99437 * 3 2 1 5 5 H 1.48491 * 109.47345 * 29.99708 * 3 2 1 6 6 H 1.48503 * 109.46612 * 150.00017 * 3 2 1 7 7 C 1.38802 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00518 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00056 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.64637 * 359.97438 * 9 7 2 11 11 C 1.54914 * 104.83011 * 155.90144 * 10 9 7 12 12 C 1.55158 * 101.58024 * 37.00996 * 11 10 9 13 13 H 1.08997 * 110.71879 * 83.03960 * 12 11 10 14 14 C 1.52997 * 110.71889 * 206.13064 * 12 11 10 15 15 N 1.46506 * 109.47289 * 182.55931 * 14 12 11 16 16 C 1.34774 * 120.00072 * 180.02562 * 15 14 12 17 17 O 1.21546 * 120.00279 * 0.02562 * 16 15 14 18 18 C 1.47896 * 119.99644 * 180.02562 * 16 15 14 19 19 N 1.32133 * 120.03717 * 359.97438 * 18 16 15 20 20 C 1.31972 * 122.77099 * 180.02562 * 19 18 16 21 21 C 1.37779 * 121.72916 * 0.02562 * 20 19 18 22 22 C 1.40382 * 118.72746 * 359.97438 * 21 20 19 23 23 C 1.40644 * 122.28160 * 180.02562 * 22 21 20 24 24 C 1.36646 * 117.95185 * 179.97438 * 23 22 21 25 25 C 1.39400 * 119.92438 * 359.97438 * 24 23 22 26 26 N 1.31204 * 121.85454 * 359.97438 * 25 24 23 27 27 C 1.33265 * 121.22047 * 359.75133 * 26 25 24 28 28 C 1.47320 * 125.61599 * 180.19390 * 9 7 2 29 29 H 0.97005 * 120.00182 * 0.02562 * 1 2 3 30 30 H 1.09000 * 110.36749 * 37.06850 * 10 9 7 31 31 H 1.09001 * 110.45864 * 274.78812 * 10 9 7 32 32 H 1.09001 * 111.00531 * 278.93476 * 11 10 9 33 33 H 1.09001 * 111.03720 * 155.09842 * 11 10 9 34 34 H 1.09001 * 109.47289 * 62.55803 * 14 12 11 35 35 H 1.09004 * 109.47261 * 302.56059 * 14 12 11 36 36 H 0.97001 * 119.99251 * 0.02562 * 15 14 12 37 37 H 1.08003 * 119.13864 * 180.02562 * 20 19 18 38 38 H 1.08000 * 120.63924 * 179.97438 * 21 20 19 39 39 H 1.07994 * 121.02856 * 0.02562 * 23 22 21 40 40 H 1.08004 * 120.04010 * 180.02562 * 24 23 22 41 41 H 1.07999 * 119.07444 * 180.02562 * 25 24 23 42 42 H 1.08991 * 110.06396 * 61.68337 * 28 9 7 43 43 H 1.09005 * 109.84901 * 300.41965 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5331 0.0005 11 6 -0.4015 -3.9325 -0.6109 12 6 0.7786 -4.7524 -0.0255 13 1 0.5447 -5.1003 0.9807 14 6 1.1234 -5.9316 -0.9373 15 7 2.1979 -6.7208 -0.3298 16 6 2.6688 -7.8154 -0.9596 17 8 2.2024 -8.1476 -2.0317 18 6 3.7531 -8.6123 -0.3460 19 7 4.2610 -8.2515 0.8192 20 6 5.2291 -8.9221 1.4149 21 6 5.7787 -10.0538 0.8531 22 6 5.2893 -10.4981 -0.3853 23 6 5.7951 -11.6437 -1.0256 24 6 5.2531 -11.9965 -2.2294 25 6 4.2308 -11.2279 -2.7838 26 7 3.7622 -10.1607 -2.1813 27 6 4.2432 -9.7654 -1.0031 28 6 1.9339 -3.7298 0.0051 29 1 -0.4851 0.8401 -0.0004 30 1 -0.5992 -1.7591 -0.6154 31 1 -0.5290 -2.4858 1.0182 32 1 -0.3518 -3.8987 -1.6993 33 1 -1.3589 -4.3333 -0.2779 34 1 1.4511 -5.5573 -1.9071 35 1 0.2417 -6.5589 -1.0691 36 1 2.5703 -6.4554 0.5256 37 1 5.6004 -8.5746 2.3677 38 1 6.5707 -10.5888 1.3559 39 1 6.5868 -12.2270 -0.5794 40 1 5.6158 -12.8703 -2.7503 41 1 3.8121 -11.5195 -3.7356 42 1 2.5276 -3.8681 0.9086 43 1 2.5625 -3.8542 -0.8767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028600294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:40 Heat of formation + Delta-G solvation = 41.764917 kcal Electronic energy + Delta-G solvation = -26372.363212 eV Core-core repulsion = 22610.518212 eV Total energy + Delta-G solvation = -3761.845001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.34182 -40.55597 -39.25405 -38.91995 -36.05019 -34.76164 -34.29179 -32.52069 -31.92518 -31.30353 -29.82715 -27.49694 -26.50033 -25.36295 -25.07896 -23.97842 -22.23744 -21.55245 -21.16386 -19.78287 -18.95161 -18.65118 -18.55918 -17.38372 -17.11268 -16.73566 -16.65727 -16.26430 -15.67571 -15.59956 -15.41759 -15.29899 -15.07669 -14.30150 -14.28270 -14.19716 -14.00606 -13.71315 -13.55057 -13.36664 -13.14200 -13.12236 -12.82009 -12.66495 -12.01765 -11.92670 -11.84635 -11.81267 -11.60092 -11.44257 -11.26639 -10.96976 -10.74276 -10.37665 -10.19755 -10.11915 -9.47189 -8.88556 -7.77423 -5.21786 -1.11772 -0.33661 0.64102 1.45605 1.48119 1.56689 1.63172 2.00836 2.16967 2.49396 3.03528 3.05746 3.20879 3.31631 3.42576 3.61685 3.65847 3.72637 3.80726 3.94559 3.97624 4.05487 4.23516 4.28961 4.44378 4.48044 4.57771 4.64356 4.65031 4.69437 4.78456 4.90093 4.95468 5.04984 5.11172 5.12464 5.32755 5.33760 5.41840 5.47391 5.62172 5.66180 5.82448 6.31672 6.39943 6.64669 6.93292 7.11234 7.17836 7.78249 8.42463 9.24605 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021945 B = 0.002380 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.632940 B =11763.340159 C =12331.843998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.069 4.069 3 Si 0.982 3.018 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.240 4.240 8 H 0.078 0.922 9 N -0.628 5.628 10 C 0.153 3.847 11 C -0.121 4.121 12 C -0.094 4.094 13 H 0.095 0.905 14 C 0.145 3.855 15 N -0.704 5.704 16 C 0.558 3.442 17 O -0.537 6.537 18 C 0.096 3.904 19 N -0.452 5.452 20 C 0.054 3.946 21 C -0.088 4.088 22 C -0.106 4.106 23 C -0.050 4.050 24 C -0.153 4.153 25 C 0.128 3.872 26 N -0.486 5.486 27 C 0.083 3.917 28 C 0.139 3.861 29 H 0.247 0.753 30 H 0.073 0.927 31 H -0.008 1.008 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.414 0.586 37 H 0.200 0.800 38 H 0.197 0.803 39 H 0.192 0.808 40 H 0.186 0.814 41 H 0.183 0.817 42 H 0.026 0.974 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.847 -29.970 1.332 33.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.810 3.190 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.369 4.369 8 H 0.096 0.904 9 N -0.354 5.354 10 C 0.028 3.972 11 C -0.160 4.160 12 C -0.113 4.113 13 H 0.113 0.887 14 C 0.021 3.979 15 N -0.356 5.356 16 C 0.343 3.657 17 O -0.413 6.413 18 C -0.055 4.055 19 N -0.165 5.165 20 C -0.094 4.094 21 C -0.108 4.108 22 C -0.113 4.113 23 C -0.076 4.076 24 C -0.174 4.174 25 C -0.045 4.045 26 N -0.195 5.195 27 C -0.041 4.041 28 C 0.014 3.986 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.010 0.990 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.251 0.749 37 H 0.216 0.784 38 H 0.214 0.786 39 H 0.209 0.791 40 H 0.203 0.797 41 H 0.200 0.800 42 H 0.044 0.956 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 12.501 -28.651 0.750 31.268 hybrid contribution 1.138 0.401 0.300 1.243 sum 13.639 -28.250 1.051 31.388 Atomic orbital electron populations 1.70056 1.06166 1.25045 1.58602 1.25650 0.96711 1.00998 1.02729 0.85032 0.77569 0.78960 0.77488 1.21280 1.21772 1.19547 1.19450 0.90955 0.83920 1.42594 0.90444 1.44908 1.02863 1.00854 1.86820 1.21735 0.83937 0.94834 0.96715 1.22855 0.97631 0.95447 1.00070 1.22273 0.95899 0.93224 0.99882 0.88707 1.21271 0.89801 0.91140 0.95678 1.45868 1.38172 1.26457 1.25088 1.18013 0.82247 0.80914 0.84530 1.90808 1.59093 1.69802 1.21588 1.21178 0.97623 0.94151 0.92543 1.67260 1.10428 1.31400 1.07414 1.23255 0.92136 0.92827 1.01152 1.22964 0.99197 0.95987 0.92667 1.19374 0.96618 0.97918 0.97408 1.21991 0.98433 0.92874 0.94258 1.22537 0.96316 1.01909 0.96593 1.23915 0.92394 0.88475 0.99695 1.68251 1.27685 1.15690 1.07842 1.19649 0.95439 0.95798 0.93182 1.21516 0.94717 0.84801 0.97593 0.94280 0.90929 0.99049 0.91817 0.89017 0.92708 0.90336 0.74883 0.78378 0.78627 0.79120 0.79680 0.80047 0.95570 0.96411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.99 10.09 21.65 0.22 -57.77 16 2 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 3 Si 0.98 46.96 29.55 68.60 2.03 48.99 16 4 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.24 -14.03 10.28 84.03 0.86 -13.17 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.63 -33.85 3.40 -691.23 -2.35 -36.20 16 10 C 0.15 7.77 5.89 86.86 0.51 8.28 16 11 C -0.12 -4.62 6.54 31.99 0.21 -4.41 16 12 C -0.09 -3.27 2.98 -9.61 -0.03 -3.30 16 13 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 14 C 0.14 4.69 5.00 86.38 0.43 5.12 16 15 N -0.70 -22.10 5.42 -465.91 -2.53 -24.63 16 16 C 0.56 19.27 7.81 86.80 0.68 19.94 16 17 O -0.54 -21.72 15.21 -3.86 -0.06 -21.78 16 18 C 0.10 2.83 6.81 42.46 0.29 3.12 16 19 N -0.45 -11.04 9.48 -184.14 -1.75 -12.78 16 20 C 0.05 0.82 11.12 84.56 0.94 1.76 16 21 C -0.09 -0.95 9.93 22.68 0.23 -0.72 16 22 C -0.11 -1.73 5.75 -21.27 -0.12 -1.86 16 23 C -0.05 -0.42 9.94 22.48 0.22 -0.20 16 24 C -0.15 -1.32 10.03 22.18 0.22 -1.10 16 25 C 0.13 2.19 11.14 85.07 0.95 3.14 16 26 N -0.49 -13.60 8.49 -187.91 -1.60 -15.20 16 27 C 0.08 2.21 6.61 40.62 0.27 2.48 16 28 C 0.14 6.01 6.67 86.67 0.58 6.58 16 29 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 30 H 0.07 4.20 5.88 -2.39 -0.01 4.19 16 31 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 32 H 0.06 2.44 8.05 -2.39 -0.02 2.42 16 33 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.05 1.97 8.00 -2.39 -0.02 1.95 16 35 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 36 H 0.41 12.00 7.75 -92.71 -0.72 11.28 16 37 H 0.20 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.20 0.09 8.06 -2.91 -0.02 0.07 16 39 H 0.19 -0.19 8.06 -2.91 -0.02 -0.22 16 40 H 0.19 -0.02 8.06 -2.91 -0.02 -0.04 16 41 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.02 0.80 7.73 -2.38 -0.02 0.78 16 Total: -1.00 -84.59 359.49 1.00 -83.60 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.32 Total: 13.64 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: 6.70 Total: 22.14 kcal Atomic # 7 Polarization: -138.58 SS G_CDS: -8.00 Total: -146.58 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.06 Total: -21.78 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -84.59 1.00 -83.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028600294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.361 kcal (2) G-P(sol) polarization free energy of solvation -84.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds