Wall clock time and date at job start Tue Mar 31 2020 15:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99924 * 2 1 4 4 H 1.48500 * 109.47356 * 269.99575 * 3 2 1 5 5 H 1.48497 * 109.47282 * 29.99910 * 3 2 1 6 6 H 1.48500 * 109.47000 * 149.99599 * 3 2 1 7 7 C 1.38808 * 119.99492 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99536 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00239 * 359.97438 * 7 2 1 10 10 C 1.47415 * 125.65102 * 0.03078 * 9 7 2 11 11 C 1.54909 * 104.83646 * 155.83117 * 10 9 7 12 12 C 1.55161 * 101.57752 * 37.00780 * 11 10 9 13 13 H 1.09004 * 110.72239 * 83.04532 * 12 11 10 14 14 C 1.53008 * 110.71763 * 206.13186 * 12 11 10 15 15 N 1.46497 * 109.46808 * 184.99759 * 14 12 11 16 16 C 1.34777 * 120.00029 * 179.97438 * 15 14 12 17 17 O 1.21551 * 119.99597 * 0.02562 * 16 15 14 18 18 C 1.47918 * 120.00375 * 180.02562 * 16 15 14 19 19 C 1.38939 * 119.84365 * 179.97438 * 18 16 15 20 20 C 1.40652 * 117.38722 * 180.02562 * 19 18 16 21 21 C 1.40253 * 122.04298 * 180.02562 * 20 19 18 22 22 C 1.36268 * 119.47342 * 179.97438 * 21 20 19 23 23 C 1.39327 * 120.87733 * 0.02562 * 22 21 20 24 24 C 1.36233 * 121.15404 * 359.97438 * 23 22 21 25 25 C 1.40337 * 119.68095 * 0.02562 * 24 23 22 26 26 N 1.33807 * 121.61595 * 180.02562 * 25 24 23 27 27 N 1.28444 * 121.68877 * 179.97438 * 26 25 24 28 28 C 1.47031 * 125.64570 * 179.97438 * 9 7 2 29 29 H 0.96997 * 119.99716 * 0.02562 * 1 2 3 30 30 H 1.09002 * 110.36877 * 36.98964 * 10 9 7 31 31 H 1.09003 * 110.36864 * 274.67067 * 10 9 7 32 32 H 1.08999 * 111.00734 * 278.93834 * 11 10 9 33 33 H 1.09002 * 111.03985 * 155.09608 * 11 10 9 34 34 H 1.09006 * 109.46436 * 65.00385 * 14 12 11 35 35 H 1.08995 * 109.47009 * 305.00468 * 14 12 11 36 36 H 0.97001 * 120.00136 * 0.02562 * 15 14 12 37 37 H 1.07994 * 121.30823 * 0.02562 * 19 18 16 38 38 H 1.08003 * 120.26438 * 0.02562 * 21 20 19 39 39 H 1.08003 * 119.56559 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.42441 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.15727 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.88290 * 61.67917 * 28 9 7 43 43 H 1.08997 * 109.88119 * 300.51715 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 -0.1415 -2.5331 0.0016 11 6 -0.4018 -3.9323 -0.6102 12 6 0.7783 -4.7524 -0.0251 13 1 0.5446 -5.1006 0.9810 14 6 1.1230 -5.9314 -0.9373 15 7 2.1566 -6.7534 -0.3033 16 6 2.6195 -7.8543 -0.9281 17 8 2.1795 -8.1648 -2.0178 18 6 3.6628 -8.6846 -0.2877 19 6 4.1371 -9.8191 -0.9346 20 6 5.1285 -10.5709 -0.2787 21 6 5.6764 -11.7324 -0.8424 22 6 6.6351 -12.4205 -0.1610 23 6 7.0767 -11.9856 1.0868 24 6 6.5657 -10.8618 1.6629 25 6 5.5767 -10.1256 0.9927 26 7 5.0484 -9.0161 1.5222 27 7 4.1435 -8.3409 0.9099 28 6 1.9317 -3.7275 0.0017 29 1 -0.4849 0.8400 -0.0004 30 1 -0.5994 -1.7588 -0.6140 31 1 -0.5274 -2.4867 1.0200 32 1 -0.3521 -3.8982 -1.6985 33 1 -1.3591 -4.3331 -0.2772 34 1 1.4918 -5.5563 -1.8920 35 1 0.2306 -6.5346 -1.1042 36 1 2.5074 -6.5058 0.5665 37 1 3.7594 -10.1122 -1.9029 38 1 5.3417 -12.0783 -1.8093 39 1 7.0583 -13.3149 -0.5940 40 1 7.8380 -12.5488 1.6061 41 1 6.9201 -10.5391 2.6307 42 1 2.5283 -3.8643 0.9037 43 1 2.5581 -3.8510 -0.8817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028725283.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:47 Heat of formation + Delta-G solvation = 69.822607 kcal Electronic energy + Delta-G solvation = -25975.539111 eV Core-core repulsion = 22214.910783 eV Total energy + Delta-G solvation = -3760.628328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.77117 -39.72433 -38.16641 -37.59735 -34.78551 -34.10769 -32.65245 -32.01840 -30.98174 -29.74652 -28.26613 -26.03567 -25.64246 -24.97985 -23.41537 -22.91095 -21.32509 -20.15944 -19.77263 -19.13154 -18.59133 -17.35714 -16.82448 -16.45980 -16.00779 -15.82467 -15.25942 -15.15391 -14.85861 -14.69278 -14.45005 -14.11160 -13.80083 -13.56313 -12.99755 -12.87377 -12.68731 -12.54405 -12.46254 -11.76508 -11.70030 -11.60407 -11.47638 -11.18306 -10.92628 -10.77283 -10.48797 -10.24116 -10.15071 -10.05587 -9.96127 -9.87988 -9.75402 -9.49083 -9.07321 -8.86211 -8.61677 -6.79512 -5.62081 -3.03436 -0.52782 -0.05747 1.21464 1.98361 2.87441 2.91794 3.42719 3.47557 3.49655 3.49931 3.51459 3.80304 4.02835 4.09550 4.24872 4.49983 4.51852 4.56150 4.65432 5.00724 5.10530 5.15360 5.24237 5.27080 5.32542 5.43700 5.55578 5.63630 5.69114 5.72474 5.76090 5.90468 6.06115 6.10835 6.11823 6.36815 6.38515 6.60701 6.61485 6.75872 6.94890 7.42369 7.54870 7.66569 7.88717 8.01633 8.16791 8.39909 9.25844 9.86670 10.51618 11.41972 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021491 B = 0.002207 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.588500 B =12682.420608 C =13500.685206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.078 0.922 14 C 0.130 3.870 15 N -0.700 5.700 16 C 0.574 3.426 17 O -0.536 6.536 18 C -0.004 4.004 19 C -0.029 4.029 20 C -0.074 4.074 21 C -0.094 4.094 22 C -0.097 4.097 23 C -0.092 4.092 24 C -0.078 4.078 25 C 0.071 3.929 26 N -0.198 5.198 27 N -0.188 5.188 28 C 0.140 3.860 29 H 0.252 0.748 30 H 0.107 0.893 31 H 0.012 0.988 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.413 0.587 37 H 0.167 0.833 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.021 0.979 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.878 -27.758 0.193 29.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.097 0.903 14 C 0.007 3.993 15 N -0.350 5.350 16 C 0.357 3.643 17 O -0.412 6.412 18 C -0.138 4.138 19 C -0.059 4.059 20 C -0.083 4.083 21 C -0.113 4.113 22 C -0.117 4.117 23 C -0.113 4.113 24 C -0.100 4.100 25 C -0.057 4.057 26 N -0.054 5.054 27 N -0.046 5.046 28 C 0.014 3.986 29 H 0.062 0.938 30 H 0.125 0.875 31 H 0.030 0.970 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.250 0.750 37 H 0.185 0.815 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.164 0.836 42 H 0.039 0.961 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 10.413 -26.649 0.587 28.617 hybrid contribution 0.750 -0.065 -0.632 0.983 sum 11.163 -26.714 -0.044 28.953 Atomic orbital electron populations 1.69797 1.04865 1.24712 1.57819 1.24789 0.95750 0.97716 1.02568 0.86065 0.78521 0.83334 0.77549 1.21626 1.21671 1.20756 1.19084 0.90515 0.82498 1.42799 0.90534 1.44505 1.01987 0.99737 1.86837 1.21938 0.84695 0.92470 0.98227 1.23011 0.95467 0.98617 1.00304 1.22459 0.98397 0.93874 0.98709 0.90335 1.21599 0.89877 0.91117 0.96707 1.45972 1.40499 1.25110 1.23408 1.17455 0.81111 0.80985 0.84736 1.90804 1.59066 1.71342 1.20022 1.22595 0.99919 0.96759 0.94505 1.22602 0.91627 0.91497 1.00201 1.18828 0.97262 0.97098 0.95094 1.21059 0.96533 0.93293 1.00419 1.21147 0.96067 0.99805 0.94682 1.21130 0.99118 0.95822 0.95226 1.20841 0.94473 0.94127 1.00512 1.20476 0.97464 0.94901 0.92819 1.73909 1.03421 1.02892 1.25192 1.73249 1.03619 1.22216 1.05566 1.21350 0.93431 0.85884 0.97919 0.93769 0.87500 0.96971 0.91815 0.92078 0.90771 0.91180 0.75035 0.81513 0.84080 0.84570 0.84371 0.83561 0.96093 0.95803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.21 10.09 55.49 0.56 -26.65 16 2 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.22 -6.27 10.27 -15.06 -0.15 -6.42 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -15.74 3.39 -170.08 -0.58 -16.31 16 10 C 0.15 3.70 5.89 -2.53 -0.01 3.68 16 11 C -0.13 -2.52 6.53 -24.58 -0.16 -2.68 16 12 C -0.12 -1.96 2.96 -88.78 -0.26 -2.23 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 14 C 0.13 1.96 5.02 -4.04 -0.02 1.94 16 15 N -0.70 -9.96 5.46 -61.22 -0.33 -10.30 16 16 C 0.57 8.35 7.80 -12.30 -0.10 8.26 16 17 O -0.54 -8.88 16.35 5.32 0.09 -8.79 16 18 C 0.00 -0.05 6.82 -82.90 -0.57 -0.62 16 19 C -0.03 -0.30 9.51 -38.41 -0.37 -0.66 16 20 C -0.07 -0.68 5.75 -106.80 -0.61 -1.30 16 21 C -0.09 -0.56 9.81 -39.53 -0.39 -0.95 16 22 C -0.10 -0.43 9.96 -39.89 -0.40 -0.83 16 23 C -0.09 -0.43 9.94 -39.90 -0.40 -0.83 16 24 C -0.08 -0.56 10.00 -39.51 -0.40 -0.95 16 25 C 0.07 0.73 6.69 -84.79 -0.57 0.16 16 26 N -0.20 -2.53 11.55 32.23 0.37 -2.16 16 27 N -0.19 -2.56 10.70 33.24 0.36 -2.21 16 28 C 0.14 2.95 6.75 -3.06 -0.02 2.93 16 29 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.11 2.93 5.87 -51.93 -0.30 2.63 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.41 5.61 7.80 -40.82 -0.32 5.29 16 37 H 0.17 1.43 7.69 -52.49 -0.40 1.02 16 38 H 0.14 0.51 8.06 -52.48 -0.42 0.08 16 39 H 0.14 0.22 8.06 -52.48 -0.42 -0.20 16 40 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 41 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.51 7.68 -51.93 -0.40 0.11 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -33.90 361.70 -9.23 -43.13 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.61 Total: 1.39 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -4.51 Total: -0.97 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.38 Total: -57.63 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.90 -9.23 -43.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028725283.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.956 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds