Wall clock time and date at job start Tue Mar 31 2020 15:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99924 * 2 1 4 4 H 1.48500 * 109.47356 * 269.99575 * 3 2 1 5 5 H 1.48497 * 109.47282 * 29.99910 * 3 2 1 6 6 H 1.48500 * 109.47000 * 149.99599 * 3 2 1 7 7 C 1.38808 * 119.99492 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99536 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00239 * 359.97438 * 7 2 1 10 10 C 1.47415 * 125.65102 * 0.03078 * 9 7 2 11 11 C 1.54909 * 104.83646 * 155.83117 * 10 9 7 12 12 C 1.55161 * 101.57752 * 37.00780 * 11 10 9 13 13 H 1.09004 * 110.72239 * 83.04532 * 12 11 10 14 14 C 1.53008 * 110.71763 * 206.13186 * 12 11 10 15 15 N 1.46497 * 109.46808 * 184.99759 * 14 12 11 16 16 C 1.34777 * 120.00029 * 179.97438 * 15 14 12 17 17 O 1.21551 * 119.99597 * 0.02562 * 16 15 14 18 18 C 1.47918 * 120.00375 * 180.02562 * 16 15 14 19 19 C 1.38939 * 119.84365 * 179.97438 * 18 16 15 20 20 C 1.40652 * 117.38722 * 180.02562 * 19 18 16 21 21 C 1.40253 * 122.04298 * 180.02562 * 20 19 18 22 22 C 1.36268 * 119.47342 * 179.97438 * 21 20 19 23 23 C 1.39327 * 120.87733 * 0.02562 * 22 21 20 24 24 C 1.36233 * 121.15404 * 359.97438 * 23 22 21 25 25 C 1.40337 * 119.68095 * 0.02562 * 24 23 22 26 26 N 1.33807 * 121.61595 * 180.02562 * 25 24 23 27 27 N 1.28444 * 121.68877 * 179.97438 * 26 25 24 28 28 C 1.47031 * 125.64570 * 179.97438 * 9 7 2 29 29 H 0.96997 * 119.99716 * 0.02562 * 1 2 3 30 30 H 1.09002 * 110.36877 * 36.98964 * 10 9 7 31 31 H 1.09003 * 110.36864 * 274.67067 * 10 9 7 32 32 H 1.08999 * 111.00734 * 278.93834 * 11 10 9 33 33 H 1.09002 * 111.03985 * 155.09608 * 11 10 9 34 34 H 1.09006 * 109.46436 * 65.00385 * 14 12 11 35 35 H 1.08995 * 109.47009 * 305.00468 * 14 12 11 36 36 H 0.97001 * 120.00136 * 0.02562 * 15 14 12 37 37 H 1.07994 * 121.30823 * 0.02562 * 19 18 16 38 38 H 1.08003 * 120.26438 * 0.02562 * 21 20 19 39 39 H 1.08003 * 119.56559 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.42441 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.15727 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.88290 * 61.67917 * 28 9 7 43 43 H 1.08997 * 109.88119 * 300.51715 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 -0.1415 -2.5331 0.0016 11 6 -0.4018 -3.9323 -0.6102 12 6 0.7783 -4.7524 -0.0251 13 1 0.5446 -5.1006 0.9810 14 6 1.1230 -5.9314 -0.9373 15 7 2.1566 -6.7534 -0.3033 16 6 2.6195 -7.8543 -0.9281 17 8 2.1795 -8.1648 -2.0178 18 6 3.6628 -8.6846 -0.2877 19 6 4.1371 -9.8191 -0.9346 20 6 5.1285 -10.5709 -0.2787 21 6 5.6764 -11.7324 -0.8424 22 6 6.6351 -12.4205 -0.1610 23 6 7.0767 -11.9856 1.0868 24 6 6.5657 -10.8618 1.6629 25 6 5.5767 -10.1256 0.9927 26 7 5.0484 -9.0161 1.5222 27 7 4.1435 -8.3409 0.9099 28 6 1.9317 -3.7275 0.0017 29 1 -0.4849 0.8400 -0.0004 30 1 -0.5994 -1.7588 -0.6140 31 1 -0.5274 -2.4867 1.0200 32 1 -0.3521 -3.8982 -1.6985 33 1 -1.3591 -4.3331 -0.2772 34 1 1.4918 -5.5563 -1.8920 35 1 0.2306 -6.5346 -1.1042 36 1 2.5074 -6.5058 0.5665 37 1 3.7594 -10.1122 -1.9029 38 1 5.3417 -12.0783 -1.8093 39 1 7.0583 -13.3149 -0.5940 40 1 7.8380 -12.5488 1.6061 41 1 6.9201 -10.5391 2.6307 42 1 2.5283 -3.8643 0.9037 43 1 2.5581 -3.8510 -0.8817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028725283.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:47 Heat of formation + Delta-G solvation = 46.979554 kcal Electronic energy + Delta-G solvation = -25976.529660 eV Core-core repulsion = 22214.910783 eV Total energy + Delta-G solvation = -3761.618877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.51055 -40.80937 -39.31678 -38.72755 -36.19353 -34.84560 -34.38846 -32.84077 -31.77625 -31.37527 -29.87551 -27.50915 -26.40949 -26.25535 -24.84204 -23.50882 -22.47247 -21.82394 -21.27977 -19.79854 -19.63306 -18.81375 -18.12792 -17.30310 -17.07806 -16.83646 -16.75585 -16.38855 -15.72224 -15.68561 -15.63383 -15.40252 -14.97215 -14.47304 -14.35224 -14.28044 -13.55953 -13.52763 -13.45413 -13.36242 -13.16304 -13.01010 -12.83339 -12.67721 -12.23699 -12.02429 -11.94775 -11.90728 -11.84256 -11.61731 -11.42897 -11.18695 -10.96361 -10.74550 -10.49559 -10.21126 -9.47052 -8.88596 -7.77969 -5.22245 -1.18088 -0.77011 0.63074 1.20550 1.45439 1.47583 1.56303 1.87689 2.05478 2.48983 2.67464 2.80980 3.16991 3.30163 3.30981 3.44100 3.61542 3.72218 3.76997 3.83325 3.95591 4.05845 4.12466 4.18417 4.42019 4.43933 4.51874 4.64351 4.66978 4.69728 4.76703 4.90167 4.90883 5.02919 5.06043 5.12808 5.23651 5.25904 5.32249 5.37933 5.46741 5.66600 5.69661 5.82477 6.29627 6.32360 6.91336 7.11136 7.34206 7.78346 8.41982 9.23854 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021491 B = 0.002207 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.588500 B =12682.420608 C =13500.685206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.068 4.068 3 Si 0.981 3.019 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.240 4.240 8 H 0.077 0.923 9 N -0.628 5.628 10 C 0.151 3.849 11 C -0.120 4.120 12 C -0.095 4.095 13 H 0.094 0.906 14 C 0.142 3.858 15 N -0.700 5.700 16 C 0.578 3.422 17 O -0.561 6.561 18 C -0.031 4.031 19 C -0.024 4.024 20 C -0.085 4.085 21 C -0.099 4.099 22 C -0.084 4.084 23 C -0.070 4.070 24 C -0.102 4.102 25 C 0.053 3.947 26 N -0.227 5.227 27 N -0.215 5.215 28 C 0.137 3.863 29 H 0.248 0.752 30 H 0.073 0.927 31 H -0.010 1.010 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.416 0.584 37 H 0.182 0.818 38 H 0.167 0.833 39 H 0.177 0.823 40 H 0.176 0.824 41 H 0.154 0.846 42 H 0.022 0.978 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.847 -31.159 -0.173 33.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.809 3.191 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.197 1.197 7 C -0.369 4.369 8 H 0.095 0.905 9 N -0.354 5.354 10 C 0.026 3.974 11 C -0.159 4.159 12 C -0.115 4.115 13 H 0.112 0.888 14 C 0.018 3.982 15 N -0.349 5.349 16 C 0.362 3.638 17 O -0.439 6.439 18 C -0.165 4.165 19 C -0.054 4.054 20 C -0.093 4.093 21 C -0.118 4.118 22 C -0.103 4.103 23 C -0.090 4.090 24 C -0.123 4.123 25 C -0.075 4.075 26 N -0.083 5.083 27 N -0.073 5.073 28 C 0.011 3.989 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.008 0.992 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.253 0.747 37 H 0.199 0.801 38 H 0.185 0.815 39 H 0.194 0.806 40 H 0.193 0.807 41 H 0.172 0.828 42 H 0.040 0.960 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 12.396 -30.072 0.235 32.528 hybrid contribution 0.321 0.780 -0.490 0.976 sum 12.717 -29.292 -0.255 31.935 Atomic orbital electron populations 1.70052 1.06112 1.25040 1.58562 1.25645 0.96726 1.00972 1.02725 0.85038 0.77519 0.79002 0.77526 1.21151 1.21790 1.19719 1.19435 0.90923 0.83957 1.42627 0.90536 1.44829 1.02932 1.00853 1.86794 1.21760 0.83900 0.95046 0.96693 1.22849 0.97576 0.95236 1.00204 1.22294 0.95883 0.93298 0.99988 0.88788 1.21387 0.90746 0.90559 0.95477 1.45913 1.40409 1.25114 1.23497 1.17654 0.81023 0.80772 0.84324 1.90773 1.60118 1.72036 1.21015 1.22366 1.00861 0.98030 0.95204 1.22817 0.91453 0.90636 1.00479 1.19095 0.97193 0.98206 0.94812 1.21432 0.96683 0.92054 1.01615 1.21689 0.94413 1.00212 0.93980 1.21648 0.98149 0.94199 0.95016 1.21093 0.94640 0.95216 1.01317 1.20907 0.98213 0.94606 0.93776 1.73771 1.04043 1.04409 1.26056 1.73119 1.04683 1.23320 1.06173 1.21501 0.94819 0.84937 0.97597 0.94275 0.90856 0.99208 0.91492 0.88950 0.91907 0.89534 0.74725 0.80099 0.81504 0.80602 0.80666 0.82803 0.95994 0.96145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.64 10.09 21.65 0.22 -57.42 16 2 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 3 Si 0.98 46.96 29.55 68.60 2.03 48.99 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.24 -14.01 10.27 84.03 0.86 -13.14 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 9 N -0.63 -33.54 3.39 -692.01 -2.35 -35.89 16 10 C 0.15 7.57 5.89 86.86 0.51 8.08 16 11 C -0.12 -4.39 6.53 31.99 0.21 -4.18 16 12 C -0.10 -3.19 2.96 -9.60 -0.03 -3.22 16 13 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 14 C 0.14 4.16 5.02 86.38 0.43 4.59 16 15 N -0.70 -19.99 5.46 -465.89 -2.54 -22.54 16 16 C 0.58 17.05 7.80 86.81 0.68 17.73 16 17 O -0.56 -18.62 16.35 -3.87 -0.06 -18.69 16 18 C -0.03 -0.81 6.82 41.62 0.28 -0.53 16 19 C -0.02 -0.49 9.51 23.03 0.22 -0.27 16 20 C -0.08 -1.44 5.75 -21.28 -0.12 -1.57 16 21 C -0.10 -0.84 9.81 22.30 0.22 -0.62 16 22 C -0.08 -0.33 9.96 22.07 0.22 -0.11 16 23 C -0.07 -0.36 9.94 22.06 0.22 -0.14 16 24 C -0.10 -1.25 10.00 22.31 0.22 -1.03 16 25 C 0.05 1.05 6.69 40.28 0.27 1.32 16 26 N -0.23 -6.02 11.55 -51.93 -0.60 -6.62 16 27 N -0.22 -6.12 10.70 -48.75 -0.52 -6.64 16 28 C 0.14 5.82 6.75 86.72 0.59 6.41 16 29 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.07 4.19 5.87 -2.39 -0.01 4.18 16 31 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.07 2.42 8.05 -2.39 -0.02 2.40 16 33 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.06 2.02 7.93 -2.38 -0.02 2.00 16 35 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.42 11.50 7.80 -92.71 -0.72 10.78 16 37 H 0.18 2.95 7.69 -2.91 -0.02 2.93 16 38 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 39 H 0.18 -0.61 8.06 -2.91 -0.02 -0.63 16 40 H 0.18 -0.37 8.06 -2.91 -0.02 -0.39 16 41 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.02 0.89 7.68 -2.39 -0.02 0.87 16 Total: -1.00 -77.75 361.70 1.74 -76.02 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.32 Total: 12.98 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 5.25 Total: 9.81 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -5.80 Total: -129.11 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.06 Total: -18.69 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -77.75 1.74 -76.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028725283.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.998 kcal (2) G-P(sol) polarization free energy of solvation -77.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds