Wall clock time and date at job start Tue Mar 31 2020 15:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00270 * 2 1 4 4 H 1.48491 * 109.47305 * 269.99818 * 3 2 1 5 5 H 1.48503 * 109.47048 * 29.99866 * 3 2 1 6 6 H 1.48501 * 109.47003 * 149.99625 * 3 2 1 7 7 C 1.38812 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00184 * 180.02562 * 7 2 1 9 9 N 1.36947 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.47016 * 125.64746 * 0.02562 * 9 7 2 11 11 C 1.54323 * 107.26847 * 178.92170 * 10 9 7 12 12 C 1.55156 * 102.94437 * 337.80461 * 11 10 9 13 13 H 1.08997 * 111.01028 * 277.39277 * 12 11 10 14 14 C 1.52997 * 111.00793 * 153.57624 * 12 11 10 15 15 N 1.46496 * 109.47485 * 175.00443 * 14 12 11 16 16 C 1.34777 * 120.00192 * 180.02562 * 15 14 12 17 17 O 1.21594 * 119.99779 * 359.97438 * 16 15 14 18 18 C 1.47503 * 120.00238 * 180.02562 * 16 15 14 19 19 C 1.38681 * 120.33982 * 359.97438 * 18 16 15 20 20 C 1.38983 * 120.63467 * 180.02562 * 19 18 16 21 21 C 1.36221 * 121.14174 * 359.97438 * 20 19 18 22 22 C 1.40695 * 120.17103 * 359.97438 * 21 20 19 23 23 N 1.33756 * 120.97874 * 179.71870 * 22 21 20 24 24 C 1.31330 * 119.73046 * 179.75129 * 23 22 21 25 25 C 1.39647 * 120.68266 * 0.56675 * 24 23 22 26 26 N 1.31447 * 120.64144 * 359.68657 * 25 24 23 27 27 C 1.33499 * 119.72381 * 0.02704 * 26 25 24 28 28 C 1.47422 * 125.64397 * 179.97438 * 9 7 2 29 29 H 0.97008 * 120.00043 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.88257 * 59.50665 * 10 9 7 31 31 H 1.08998 * 109.88585 * 298.33877 * 10 9 7 32 32 H 1.09001 * 110.71788 * 219.44492 * 11 10 9 33 33 H 1.08990 * 110.87640 * 96.24276 * 11 10 9 34 34 H 1.09002 * 109.47107 * 54.99901 * 14 12 11 35 35 H 1.08999 * 109.47103 * 295.00640 * 14 12 11 36 36 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 37 37 H 1.07998 * 119.68367 * 359.97438 * 19 18 16 38 38 H 1.07992 * 119.43329 * 179.97438 * 20 19 18 39 39 H 1.08003 * 119.91552 * 180.02562 * 21 20 19 40 40 H 1.08007 * 119.66054 * 180.25895 * 24 23 22 41 41 H 1.07996 * 119.67830 * 179.71402 * 25 24 23 42 42 H 1.09005 * 110.36427 * 85.31398 * 28 9 7 43 43 H 1.09001 * 110.37166 * 322.99189 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1377 -2.5327 -0.0005 11 6 -0.4486 -4.0440 -0.0278 12 6 0.8521 -4.6560 -0.6117 13 1 0.8576 -4.5966 -1.7001 14 6 1.0368 -6.1008 -0.1435 15 7 2.2062 -6.6833 -0.8063 16 6 2.5639 -7.9564 -0.5459 17 8 1.9161 -8.6213 0.2395 18 6 3.7417 -8.5427 -1.2128 19 6 4.4858 -7.7906 -2.1093 20 6 5.5963 -8.3370 -2.7416 21 6 5.9842 -9.6203 -2.4997 22 6 5.2595 -10.4198 -1.5968 23 7 5.6227 -11.6835 -1.3516 24 6 4.9315 -12.4063 -0.5004 25 6 3.8129 -11.8730 0.1436 26 7 3.4346 -10.6353 -0.0858 27 6 4.1254 -9.8800 -0.9429 28 6 1.9333 -3.7312 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5570 -2.0519 -0.8844 31 1 -0.5552 -2.0846 0.9011 32 1 -1.2982 -4.2512 -0.6786 33 1 -0.6343 -4.4206 0.9780 34 1 0.1493 -6.6809 -0.3963 35 1 1.1857 -6.1166 0.9362 36 1 2.7227 -6.1529 -1.4331 37 1 4.1991 -6.7706 -2.3189 38 1 6.1615 -7.7340 -3.4366 39 1 6.8507 -10.0247 -3.0017 40 1 5.2282 -13.4253 -0.3000 41 1 3.2536 -12.4834 0.8370 42 1 2.1657 -4.0423 1.0190 43 1 2.8331 -3.7404 -0.6145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028894641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:34 Heat of formation + Delta-G solvation = 68.562975 kcal Electronic energy + Delta-G solvation = -26355.899130 eV Core-core repulsion = 22595.216180 eV Total energy + Delta-G solvation = -3760.682950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.78244 -39.63405 -37.79303 -37.39903 -35.03413 -34.59814 -32.60706 -31.24268 -31.18132 -29.67522 -28.23906 -25.90598 -25.57876 -24.49614 -24.10220 -22.87446 -20.73204 -20.01981 -19.82480 -19.05183 -18.55932 -17.31877 -16.90566 -16.54631 -15.86375 -15.61280 -15.39025 -15.13279 -14.71819 -14.58822 -14.38168 -14.30034 -13.78272 -13.42894 -13.08431 -12.59249 -12.35448 -12.25815 -12.18782 -12.04885 -11.88094 -11.85885 -11.71547 -11.38264 -10.91420 -10.80632 -10.41036 -10.17695 -10.05943 -9.92026 -9.84057 -9.66658 -9.38392 -9.19391 -9.06572 -8.83234 -8.61210 -6.84318 -5.72395 -3.06014 -0.35444 0.18455 1.36118 2.28052 3.07150 3.09678 3.38605 3.43672 3.45838 3.64020 3.76720 3.80307 3.96122 4.31338 4.40334 4.48265 4.58841 4.69929 4.83990 4.94744 5.10256 5.22545 5.31417 5.38631 5.43349 5.52142 5.54569 5.68513 5.75168 5.80165 5.89499 6.05584 6.06681 6.19656 6.34700 6.43539 6.48523 6.53551 6.68301 6.90494 6.94229 7.42340 7.54651 7.55379 7.62813 7.81826 8.25060 8.26765 9.21007 9.81466 10.47559 11.39333 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.002382 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.320420 B =11751.291500 C =12655.853843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.079 0.921 14 C 0.135 3.865 15 N -0.722 5.722 16 C 0.549 3.451 17 O -0.502 6.502 18 C -0.095 4.095 19 C -0.060 4.060 20 C -0.105 4.105 21 C -0.061 4.061 22 C 0.070 3.930 23 N -0.427 5.427 24 C 0.075 3.925 25 C 0.075 3.925 26 N -0.387 5.387 27 C 0.112 3.888 28 C 0.142 3.858 29 H 0.252 0.748 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.398 0.602 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.176 0.824 41 H 0.176 0.824 42 H 0.020 0.980 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.668 -23.023 -5.461 25.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.011 3.989 15 N -0.375 5.375 16 C 0.334 3.666 17 O -0.377 6.377 18 C -0.100 4.100 19 C -0.081 4.081 20 C -0.125 4.125 21 C -0.081 4.081 22 C -0.054 4.054 23 N -0.141 5.141 24 C -0.101 4.101 25 C -0.101 4.101 26 N -0.100 5.100 27 C -0.014 4.014 28 C 0.016 3.984 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.233 0.767 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.193 0.807 41 H 0.193 0.807 42 H 0.037 0.963 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.132 -23.045 -4.966 25.280 hybrid contribution 0.726 1.100 -0.272 1.345 sum 9.858 -21.945 -5.238 24.621 Atomic orbital electron populations 1.69966 1.04884 1.25031 1.57040 1.24810 0.95730 0.97693 1.02280 0.86120 0.78590 0.83518 0.77536 1.21617 1.21667 1.20718 1.19049 0.90399 0.82445 1.43831 0.90498 1.44485 1.01749 0.99861 1.87194 1.21147 0.84306 0.88175 1.01114 1.22856 0.95391 0.99363 0.99754 1.22618 0.98669 0.91992 1.00486 0.90221 1.21413 0.86963 0.93096 0.97394 1.46016 1.31668 1.12876 1.46971 1.17873 0.84191 0.81909 0.82581 1.90850 1.52885 1.60176 1.33794 1.19981 0.97731 0.92617 0.99625 1.21653 0.93452 0.99942 0.93009 1.20971 0.96575 0.95258 0.99686 1.20999 0.98830 0.93109 0.95147 1.19541 0.95128 0.92215 0.98528 1.68698 1.27992 1.04219 1.13158 1.24116 0.92613 1.01013 0.92324 1.24296 0.95109 0.92619 0.98030 1.69038 1.26186 1.04408 1.10379 1.19305 0.92979 0.94267 0.94813 1.21582 0.93913 0.86155 0.96775 0.93746 0.93550 0.93893 0.91976 0.92157 0.91514 0.91178 0.76660 0.83897 0.83737 0.83850 0.80731 0.80696 0.96276 0.94694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.99 10.31 55.49 0.57 -26.41 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.32 10.28 -15.05 -0.15 -6.47 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.61 -15.25 3.39 -170.09 -0.58 -15.83 16 10 C 0.18 4.25 5.37 -3.07 -0.02 4.23 16 11 C -0.13 -2.43 6.42 -24.90 -0.16 -2.59 16 12 C -0.12 -1.92 3.05 -88.48 -0.27 -2.19 16 13 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 14 C 0.13 1.95 5.13 -4.05 -0.02 1.93 16 15 N -0.72 -9.32 5.45 -61.36 -0.33 -9.65 16 16 C 0.55 8.03 7.77 -12.48 -0.10 7.93 16 17 O -0.50 -9.12 15.19 5.28 0.08 -9.04 16 18 C -0.09 -1.17 5.90 -104.63 -0.62 -1.79 16 19 C -0.06 -0.52 9.52 -39.14 -0.37 -0.89 16 20 C -0.11 -0.74 9.93 -40.03 -0.40 -1.13 16 21 C -0.06 -0.51 9.97 -39.38 -0.39 -0.90 16 22 C 0.07 0.78 6.59 -84.82 -0.56 0.22 16 23 N -0.43 -4.39 10.46 -10.82 -0.11 -4.50 16 24 C 0.07 0.58 11.21 -17.24 -0.19 0.39 16 25 C 0.07 0.69 11.22 -17.19 -0.19 0.49 16 26 N -0.39 -5.26 8.56 -10.59 -0.09 -5.35 16 27 C 0.11 1.46 6.60 -84.53 -0.56 0.90 16 28 C 0.14 2.80 6.65 -2.54 -0.02 2.79 16 29 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 31 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.10 7.96 -51.93 -0.41 0.69 16 36 H 0.40 4.19 6.50 -40.82 -0.27 3.92 16 37 H 0.14 0.91 6.37 -52.49 -0.33 0.57 16 38 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 40 H 0.18 0.62 8.06 -52.48 -0.42 0.19 16 41 H 0.18 0.98 8.06 -52.49 -0.42 0.55 16 42 H 0.02 0.40 7.91 -51.93 -0.41 -0.02 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 357.93 15.07 5.39 5.39 Total: -1.00 -36.17 357.93 -9.75 -45.92 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.54 Total: -0.01 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -4.11 Total: 2.57 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -0.54 Total: -61.75 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.17 -9.75 -45.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028894641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.487 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds