Wall clock time and date at job start Tue Mar 31 2020 15:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00270 * 2 1 4 4 H 1.48491 * 109.47305 * 269.99818 * 3 2 1 5 5 H 1.48503 * 109.47048 * 29.99866 * 3 2 1 6 6 H 1.48501 * 109.47003 * 149.99625 * 3 2 1 7 7 C 1.38812 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00184 * 180.02562 * 7 2 1 9 9 N 1.36947 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.47016 * 125.64746 * 0.02562 * 9 7 2 11 11 C 1.54323 * 107.26847 * 178.92170 * 10 9 7 12 12 C 1.55156 * 102.94437 * 337.80461 * 11 10 9 13 13 H 1.08997 * 111.01028 * 277.39277 * 12 11 10 14 14 C 1.52997 * 111.00793 * 153.57624 * 12 11 10 15 15 N 1.46496 * 109.47485 * 175.00443 * 14 12 11 16 16 C 1.34777 * 120.00192 * 180.02562 * 15 14 12 17 17 O 1.21594 * 119.99779 * 359.97438 * 16 15 14 18 18 C 1.47503 * 120.00238 * 180.02562 * 16 15 14 19 19 C 1.38681 * 120.33982 * 359.97438 * 18 16 15 20 20 C 1.38983 * 120.63467 * 180.02562 * 19 18 16 21 21 C 1.36221 * 121.14174 * 359.97438 * 20 19 18 22 22 C 1.40695 * 120.17103 * 359.97438 * 21 20 19 23 23 N 1.33756 * 120.97874 * 179.71870 * 22 21 20 24 24 C 1.31330 * 119.73046 * 179.75129 * 23 22 21 25 25 C 1.39647 * 120.68266 * 0.56675 * 24 23 22 26 26 N 1.31447 * 120.64144 * 359.68657 * 25 24 23 27 27 C 1.33499 * 119.72381 * 0.02704 * 26 25 24 28 28 C 1.47422 * 125.64397 * 179.97438 * 9 7 2 29 29 H 0.97008 * 120.00043 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.88257 * 59.50665 * 10 9 7 31 31 H 1.08998 * 109.88585 * 298.33877 * 10 9 7 32 32 H 1.09001 * 110.71788 * 219.44492 * 11 10 9 33 33 H 1.08990 * 110.87640 * 96.24276 * 11 10 9 34 34 H 1.09002 * 109.47107 * 54.99901 * 14 12 11 35 35 H 1.08999 * 109.47103 * 295.00640 * 14 12 11 36 36 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 37 37 H 1.07998 * 119.68367 * 359.97438 * 19 18 16 38 38 H 1.07992 * 119.43329 * 179.97438 * 20 19 18 39 39 H 1.08003 * 119.91552 * 180.02562 * 21 20 19 40 40 H 1.08007 * 119.66054 * 180.25895 * 24 23 22 41 41 H 1.07996 * 119.67830 * 179.71402 * 25 24 23 42 42 H 1.09005 * 110.36427 * 85.31398 * 28 9 7 43 43 H 1.09001 * 110.37166 * 322.99189 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1377 -2.5327 -0.0005 11 6 -0.4486 -4.0440 -0.0278 12 6 0.8521 -4.6560 -0.6117 13 1 0.8576 -4.5966 -1.7001 14 6 1.0368 -6.1008 -0.1435 15 7 2.2062 -6.6833 -0.8063 16 6 2.5639 -7.9564 -0.5459 17 8 1.9161 -8.6213 0.2395 18 6 3.7417 -8.5427 -1.2128 19 6 4.4858 -7.7906 -2.1093 20 6 5.5963 -8.3370 -2.7416 21 6 5.9842 -9.6203 -2.4997 22 6 5.2595 -10.4198 -1.5968 23 7 5.6227 -11.6835 -1.3516 24 6 4.9315 -12.4063 -0.5004 25 6 3.8129 -11.8730 0.1436 26 7 3.4346 -10.6353 -0.0858 27 6 4.1254 -9.8800 -0.9429 28 6 1.9333 -3.7312 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5570 -2.0519 -0.8844 31 1 -0.5552 -2.0846 0.9011 32 1 -1.2982 -4.2512 -0.6786 33 1 -0.6343 -4.4206 0.9780 34 1 0.1493 -6.6809 -0.3963 35 1 1.1857 -6.1166 0.9362 36 1 2.7227 -6.1529 -1.4331 37 1 4.1991 -6.7706 -2.3189 38 1 6.1615 -7.7340 -3.4366 39 1 6.8507 -10.0247 -3.0017 40 1 5.2282 -13.4253 -0.3000 41 1 3.2536 -12.4834 0.8370 42 1 2.1657 -4.0423 1.0190 43 1 2.8331 -3.7404 -0.6145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028894641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:33 Heat of formation + Delta-G solvation = 42.871361 kcal Electronic energy + Delta-G solvation = -26357.013202 eV Core-core repulsion = 22595.216180 eV Total energy + Delta-G solvation = -3761.797022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.49435 -40.70224 -39.25078 -38.23373 -36.09779 -35.65485 -34.34686 -32.27460 -31.83957 -31.29876 -29.79019 -27.35582 -26.49239 -25.67574 -25.04329 -24.01334 -22.07287 -21.59250 -21.08259 -19.79393 -19.38580 -18.78811 -18.10099 -17.49443 -17.07637 -16.65884 -16.53932 -16.19879 -15.96734 -15.70713 -15.57656 -15.16729 -15.01527 -14.59228 -14.50383 -13.96960 -13.81156 -13.45363 -13.21543 -13.04416 -12.90199 -12.81003 -12.76348 -12.67420 -12.60540 -12.59527 -12.02064 -11.87980 -11.83819 -11.53908 -11.45605 -11.07484 -10.69420 -10.13106 -10.03448 -9.97304 -9.63897 -8.88641 -7.83846 -5.19368 -1.04881 -0.47714 0.59403 1.46796 1.48764 1.57298 1.62712 2.06490 2.15716 2.50550 3.01937 3.05110 3.15994 3.25215 3.34526 3.60270 3.65726 3.72698 3.82683 3.95211 4.02988 4.04692 4.13585 4.27081 4.37933 4.45745 4.57289 4.62882 4.72983 4.79196 4.83689 4.92830 4.96619 5.06235 5.08883 5.13609 5.21490 5.34090 5.47104 5.47835 5.60405 5.68860 5.79165 6.21268 6.26142 6.53215 6.76188 7.11527 7.23425 7.79418 8.43896 9.26766 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.002382 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.320420 B =11751.291500 C =12655.853843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.240 4.240 8 H 0.085 0.915 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.124 4.124 12 C -0.094 4.094 13 H 0.094 0.906 14 C 0.147 3.853 15 N -0.713 5.713 16 C 0.549 3.451 17 O -0.548 6.548 18 C -0.133 4.133 19 C -0.042 4.042 20 C -0.098 4.098 21 C -0.058 4.058 22 C 0.049 3.951 23 N -0.442 5.442 24 C 0.082 3.918 25 C 0.075 3.925 26 N -0.441 5.441 27 C 0.085 3.915 28 C 0.138 3.862 29 H 0.246 0.754 30 H 0.014 0.986 31 H 0.002 0.998 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.411 0.589 37 H 0.167 0.833 38 H 0.185 0.815 39 H 0.167 0.833 40 H 0.219 0.781 41 H 0.204 0.796 42 H 0.015 0.985 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.013 -24.352 -6.991 28.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.369 4.369 8 H 0.103 0.897 9 N -0.355 5.355 10 C 0.058 3.942 11 C -0.162 4.162 12 C -0.114 4.114 13 H 0.112 0.888 14 C 0.023 3.977 15 N -0.366 5.366 16 C 0.337 3.663 17 O -0.426 6.426 18 C -0.138 4.138 19 C -0.062 4.062 20 C -0.118 4.118 21 C -0.077 4.077 22 C -0.074 4.074 23 N -0.156 5.156 24 C -0.093 4.093 25 C -0.100 4.100 26 N -0.155 5.155 27 C -0.039 4.039 28 C 0.013 3.987 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.021 0.979 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.249 0.751 37 H 0.184 0.816 38 H 0.202 0.798 39 H 0.184 0.816 40 H 0.236 0.764 41 H 0.221 0.779 42 H 0.033 0.967 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.523 -24.377 -6.528 27.742 hybrid contribution 0.064 1.405 0.225 1.424 sum 11.587 -22.972 -6.303 26.489 Atomic orbital electron populations 1.70197 1.06360 1.25206 1.58449 1.25677 0.96617 1.01131 1.02800 0.85071 0.77585 0.79082 0.77556 1.21007 1.22424 1.19377 1.19481 0.91075 0.83698 1.42696 0.89741 1.44814 1.02466 1.01248 1.86986 1.20910 0.83891 0.91722 0.97656 1.22721 0.97235 0.95045 1.01227 1.22412 0.95979 0.92055 1.00913 0.88775 1.21142 0.87978 0.91847 0.96703 1.45851 1.31237 1.12661 1.46877 1.18270 0.84433 0.81748 0.81894 1.90812 1.54576 1.61289 1.35944 1.19901 0.98359 0.93337 1.02179 1.22008 0.92796 1.00461 0.90948 1.21394 0.95849 0.95077 0.99438 1.21390 0.98898 0.93369 0.94070 1.19876 0.95189 0.93000 0.99334 1.68774 1.28593 1.04193 1.14088 1.24783 0.91435 1.02358 0.90745 1.24902 0.95516 0.91738 0.97893 1.68986 1.28045 1.06367 1.12083 1.19572 0.93989 0.94783 0.95596 1.21766 0.95461 0.84369 0.97144 0.94490 0.96768 0.97933 0.89587 0.91277 0.90893 0.92496 0.75122 0.81558 0.79761 0.81581 0.76433 0.77897 0.96695 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.58 10.31 21.65 0.22 -57.36 16 2 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 3 Si 0.98 45.48 29.55 68.60 2.03 47.50 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.24 -13.32 10.28 84.03 0.86 -12.46 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.63 -31.80 3.39 -692.03 -2.35 -34.14 16 10 C 0.18 9.01 5.37 86.73 0.47 9.48 16 11 C -0.12 -4.37 6.42 31.78 0.20 -4.16 16 12 C -0.09 -2.90 3.05 -9.41 -0.03 -2.92 16 13 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 14 C 0.15 4.06 5.13 86.38 0.44 4.51 16 15 N -0.71 -17.41 5.45 -466.31 -2.54 -19.95 16 16 C 0.55 16.01 7.77 86.69 0.67 16.69 16 17 O -0.55 -20.49 15.19 -4.01 -0.06 -20.55 16 18 C -0.13 -3.21 5.90 -19.87 -0.12 -3.33 16 19 C -0.04 -0.62 9.52 22.55 0.21 -0.41 16 20 C -0.10 -1.04 9.93 21.98 0.22 -0.82 16 21 C -0.06 -0.81 9.97 22.40 0.22 -0.59 16 22 C 0.05 1.04 6.59 40.28 0.27 1.31 16 23 N -0.44 -8.45 10.46 -188.15 -1.97 -10.41 16 24 C 0.08 1.15 11.21 85.11 0.95 2.10 16 25 C 0.07 1.33 11.22 85.09 0.95 2.28 16 26 N -0.44 -12.26 8.56 -187.42 -1.60 -13.86 16 27 C 0.09 2.23 6.60 40.58 0.27 2.49 16 28 C 0.14 5.27 6.65 86.85 0.58 5.85 16 29 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 30 H 0.01 0.77 7.38 -2.38 -0.02 0.76 16 31 H 0.00 0.14 7.51 -2.39 -0.02 0.12 16 32 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.07 2.33 8.04 -2.39 -0.02 2.31 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.06 1.76 7.96 -2.39 -0.02 1.74 16 36 H 0.41 7.65 6.50 -92.71 -0.60 7.04 16 37 H 0.17 1.53 6.37 -2.91 -0.02 1.52 16 38 H 0.19 0.47 8.06 -2.91 -0.02 0.45 16 39 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.22 0.84 8.06 -2.91 -0.02 0.81 16 41 H 0.20 2.04 8.06 -2.91 -0.02 2.01 16 42 H 0.02 0.60 7.91 -2.38 -0.02 0.58 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -83.61 357.93 0.81 -82.80 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.44 Total: 9.45 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 6.65 Total: 16.53 kcal Atomic # 7 Polarization: -127.49 SS G_CDS: -8.24 Total: -135.73 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.06 Total: -20.55 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -83.61 0.81 -82.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028894641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.667 kcal (2) G-P(sol) polarization free energy of solvation -83.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds