Wall clock time and date at job start Tue Mar 31 2020 14:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00408 * 2 1 4 4 H 1.48499 * 109.46769 * 269.99777 * 3 2 1 5 5 H 1.48503 * 109.46902 * 29.99576 * 3 2 1 6 6 H 1.48502 * 109.47473 * 149.99697 * 3 2 1 7 7 C 1.38821 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99634 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.65184 * 0.02951 * 9 7 2 11 11 C 1.54318 * 107.27084 * 178.91386 * 10 9 7 12 12 C 1.55150 * 102.94554 * 337.80723 * 11 10 9 13 13 H 1.09001 * 111.00676 * 277.39116 * 12 11 10 14 14 C 1.53004 * 111.00493 * 153.57549 * 12 11 10 15 15 N 1.46498 * 109.46924 * 175.00079 * 14 12 11 16 16 C 1.34778 * 119.99965 * 179.97438 * 15 14 12 17 17 O 1.21556 * 119.99709 * 0.02562 * 16 15 14 18 18 C 1.47868 * 120.00446 * 179.97438 * 16 15 14 19 19 C 1.40619 * 119.75055 * 359.93217 * 18 16 15 20 20 C 1.35735 * 120.83521 * 179.97438 * 19 18 16 21 21 C 1.40711 * 120.07862 * 0.04934 * 20 19 18 22 22 N 1.33796 * 120.85607 * 179.97438 * 21 20 19 23 23 C 1.31323 * 119.76073 * 180.02562 * 22 21 20 24 24 C 1.39757 * 120.71557 * 359.97438 * 23 22 21 25 25 N 1.31280 * 120.67025 * 0.02562 * 24 23 22 26 26 C 1.33823 * 119.73372 * 359.97438 * 25 24 23 27 27 C 1.38410 * 119.75765 * 180.02562 * 18 16 15 28 28 C 1.47432 * 125.64460 * 180.02562 * 9 7 2 29 29 H 0.97000 * 119.99905 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.87772 * 59.49766 * 10 9 7 31 31 H 1.09002 * 109.88063 * 298.33457 * 10 9 7 32 32 H 1.08996 * 110.71828 * 219.44201 * 11 10 9 33 33 H 1.09007 * 110.87202 * 96.24405 * 11 10 9 34 34 H 1.08992 * 109.47376 * 54.99898 * 14 12 11 35 35 H 1.08998 * 109.46973 * 294.99613 * 14 12 11 36 36 H 0.96998 * 120.00698 * 359.97438 * 15 14 12 37 37 H 1.08006 * 119.58571 * 0.04245 * 19 18 16 38 38 H 1.07994 * 119.95822 * 180.02562 * 20 19 18 39 39 H 1.08006 * 119.64412 * 180.02562 * 23 22 21 40 40 H 1.07996 * 119.66903 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.25032 * 0.24811 * 27 18 16 42 42 H 1.08995 * 110.36252 * 85.31532 * 28 9 7 43 43 H 1.08995 * 110.36476 * 322.98931 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1376 -2.5328 0.0016 11 6 -0.4486 -4.0441 -0.0249 12 6 0.8517 -4.6562 -0.6095 13 1 0.8564 -4.5972 -1.6979 14 6 1.0367 -6.1009 -0.1407 15 7 2.2056 -6.6836 -0.8042 16 6 2.5641 -7.9563 -0.5429 17 8 1.9171 -8.6207 0.2430 18 6 3.7436 -8.5447 -1.2129 19 6 4.4868 -7.7722 -2.1230 20 6 5.5736 -8.2900 -2.7500 21 6 5.9701 -9.6157 -2.4946 22 7 7.0384 -10.1420 -3.1044 23 6 7.3890 -11.3818 -2.8504 24 6 6.6582 -12.1598 -1.9483 25 7 5.6062 -11.6662 -1.3374 26 6 5.2290 -10.4053 -1.5796 27 6 4.1068 -9.8524 -0.9411 28 6 1.9334 -3.7312 0.0028 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5576 -2.0523 -0.8820 31 1 -0.5544 -2.0843 0.9035 32 1 -1.2986 -4.2515 -0.6749 33 1 -0.6335 -4.4203 0.9813 34 1 0.1491 -6.6811 -0.3927 35 1 1.1865 -6.1162 0.9388 36 1 2.7217 -6.1536 -1.4316 37 1 4.1898 -6.7536 -2.3248 38 1 6.1343 -7.6839 -3.4461 39 1 8.2520 -11.8046 -3.3434 40 1 6.9618 -13.1774 -1.7517 41 1 3.5300 -10.4440 -0.2456 42 1 2.1658 -4.0414 1.0215 43 1 2.8331 -3.7409 -0.6123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028973082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:15 Heat of formation + Delta-G solvation = 60.234019 kcal Electronic energy + Delta-G solvation = -25971.853369 eV Core-core repulsion = 22210.809249 eV Total energy + Delta-G solvation = -3761.044120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83944 -40.01882 -37.86854 -37.24412 -35.25477 -34.80452 -32.64269 -31.46033 -31.00638 -29.79818 -28.38064 -26.36382 -25.29420 -24.91958 -23.61304 -22.58042 -21.45423 -20.11002 -20.02228 -18.92562 -18.64340 -17.50647 -16.91375 -16.70421 -16.00973 -15.65780 -15.33073 -15.07013 -14.82876 -14.59503 -14.57137 -14.20077 -13.99599 -13.59193 -13.19283 -12.90004 -12.38926 -12.26577 -12.17785 -12.15708 -12.10703 -11.99713 -11.77962 -11.43107 -10.93116 -10.81862 -10.50014 -10.22915 -10.09384 -9.94310 -9.85569 -9.68404 -9.57785 -9.47750 -9.13464 -8.96484 -8.62585 -6.86148 -5.73787 -3.07483 -0.35975 -0.01943 1.40701 1.97281 2.94173 3.00561 3.38001 3.43154 3.45209 3.55070 3.62048 3.69393 3.79157 4.29727 4.38449 4.45539 4.47781 4.59291 4.70194 4.92327 5.04098 5.17397 5.26824 5.36939 5.42715 5.51607 5.58439 5.65419 5.67263 5.79429 5.84856 5.98805 6.01449 6.11403 6.30334 6.32642 6.45574 6.49946 6.63657 6.77929 6.86691 7.23911 7.37806 7.53359 7.60611 7.80243 8.04438 8.23479 9.19529 9.79917 10.45738 11.37924 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020340 B = 0.002239 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.294956 B =12503.232052 C =13634.518324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.119 4.119 13 H 0.080 0.920 14 C 0.131 3.869 15 N -0.715 5.715 16 C 0.555 3.445 17 O -0.534 6.534 18 C -0.110 4.110 19 C -0.073 4.073 20 C -0.085 4.085 21 C 0.092 3.908 22 N -0.427 5.427 23 C 0.084 3.916 24 C 0.073 3.927 25 N -0.416 5.416 26 C 0.069 3.931 27 C -0.015 4.015 28 C 0.141 3.859 29 H 0.252 0.748 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.402 0.598 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.177 0.823 40 H 0.178 0.822 41 H 0.156 0.844 42 H 0.020 0.980 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.304 -22.816 -6.836 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.138 4.138 13 H 0.099 0.901 14 C 0.008 3.992 15 N -0.367 5.367 16 C 0.341 3.659 17 O -0.412 6.412 18 C -0.116 4.116 19 C -0.093 4.093 20 C -0.104 4.104 21 C -0.032 4.032 22 N -0.141 5.141 23 C -0.092 4.092 24 C -0.103 4.103 25 N -0.130 5.130 26 C -0.055 4.055 27 C -0.035 4.035 28 C 0.015 3.985 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.238 0.762 37 H 0.160 0.840 38 H 0.165 0.835 39 H 0.194 0.806 40 H 0.195 0.805 41 H 0.173 0.827 42 H 0.038 0.962 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.598 -22.818 -6.207 25.914 hybrid contribution 0.821 1.109 -0.356 1.425 sum 11.419 -21.709 -6.562 25.392 Atomic orbital electron populations 1.69963 1.04884 1.25058 1.56997 1.24816 0.95738 0.97711 1.02241 0.86117 0.78590 0.83486 0.77552 1.21601 1.21662 1.20709 1.19047 0.90404 0.82429 1.43894 0.90483 1.44482 1.01737 0.99849 1.87202 1.21152 0.84311 0.88149 1.01155 1.22858 0.95351 0.99392 0.99754 1.22637 0.98775 0.91862 1.00561 0.90129 1.21488 0.86894 0.93300 0.97494 1.46002 1.31469 1.12807 1.46378 1.18072 0.83897 0.82015 0.81910 1.90798 1.54099 1.60886 1.35395 1.20069 0.97321 0.94795 0.99377 1.21125 0.93903 1.00180 0.94091 1.20708 0.96844 0.92685 1.00190 1.19692 0.92786 0.95831 0.94855 1.68745 1.12214 1.12292 1.20836 1.24176 0.99528 0.90311 0.95212 1.24126 0.91312 1.01691 0.93154 1.68690 1.13001 1.10797 1.20538 1.19446 0.97188 0.91303 0.97555 1.21235 0.92775 0.93567 0.95937 1.21599 0.93911 0.86196 0.96789 0.93732 0.93516 0.93872 0.91938 0.92136 0.91283 0.90954 0.76239 0.83960 0.83462 0.80575 0.80549 0.82680 0.96242 0.94646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 10.31 55.49 0.57 -26.25 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.61 -15.07 3.39 -170.05 -0.58 -15.65 16 10 C 0.18 4.18 5.37 -3.07 -0.02 4.17 16 11 C -0.13 -2.37 6.42 -24.90 -0.16 -2.53 16 12 C -0.12 -1.86 3.05 -88.46 -0.27 -2.13 16 13 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 14 C 0.13 1.79 5.13 -4.04 -0.02 1.77 16 15 N -0.72 -8.52 5.45 -61.24 -0.33 -8.85 16 16 C 0.55 7.25 7.77 -12.32 -0.10 7.15 16 17 O -0.53 -8.77 16.30 5.32 0.09 -8.68 16 18 C -0.11 -1.20 5.87 -104.99 -0.62 -1.82 16 19 C -0.07 -0.63 9.44 -39.58 -0.37 -1.00 16 20 C -0.08 -0.75 9.95 -39.54 -0.39 -1.15 16 21 C 0.09 0.96 6.59 -84.73 -0.56 0.40 16 22 N -0.43 -4.04 10.46 -10.74 -0.11 -4.15 16 23 C 0.08 0.52 11.21 -17.20 -0.19 0.33 16 24 C 0.07 0.48 11.22 -17.22 -0.19 0.28 16 25 N -0.42 -4.22 10.46 -10.81 -0.11 -4.34 16 26 C 0.07 0.76 6.58 -84.82 -0.56 0.20 16 27 C -0.01 -0.17 9.56 -38.69 -0.37 -0.54 16 28 C 0.14 2.73 6.65 -2.51 -0.02 2.71 16 29 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 31 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.07 7.96 -51.93 -0.41 0.65 16 36 H 0.40 3.92 6.46 -40.82 -0.26 3.65 16 37 H 0.14 0.91 6.35 -52.48 -0.33 0.58 16 38 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.18 0.38 8.06 -52.48 -0.42 -0.04 16 40 H 0.18 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.16 1.80 7.61 -52.49 -0.40 1.40 16 42 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -34.69 359.91 -9.68 -44.37 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.52 Total: 0.23 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -4.09 Total: 1.06 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.56 Total: -59.24 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.69 -9.68 -44.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028973082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.603 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds