Wall clock time and date at job start Tue Mar 31 2020 14:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00408 * 2 1 4 4 H 1.48499 * 109.46769 * 269.99777 * 3 2 1 5 5 H 1.48503 * 109.46902 * 29.99576 * 3 2 1 6 6 H 1.48502 * 109.47473 * 149.99697 * 3 2 1 7 7 C 1.38821 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99634 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.65184 * 0.02951 * 9 7 2 11 11 C 1.54318 * 107.27084 * 178.91386 * 10 9 7 12 12 C 1.55150 * 102.94554 * 337.80723 * 11 10 9 13 13 H 1.09001 * 111.00676 * 277.39116 * 12 11 10 14 14 C 1.53004 * 111.00493 * 153.57549 * 12 11 10 15 15 N 1.46498 * 109.46924 * 175.00079 * 14 12 11 16 16 C 1.34778 * 119.99965 * 179.97438 * 15 14 12 17 17 O 1.21556 * 119.99709 * 0.02562 * 16 15 14 18 18 C 1.47868 * 120.00446 * 179.97438 * 16 15 14 19 19 C 1.40619 * 119.75055 * 359.93217 * 18 16 15 20 20 C 1.35735 * 120.83521 * 179.97438 * 19 18 16 21 21 C 1.40711 * 120.07862 * 0.04934 * 20 19 18 22 22 N 1.33796 * 120.85607 * 179.97438 * 21 20 19 23 23 C 1.31323 * 119.76073 * 180.02562 * 22 21 20 24 24 C 1.39757 * 120.71557 * 359.97438 * 23 22 21 25 25 N 1.31280 * 120.67025 * 0.02562 * 24 23 22 26 26 C 1.33823 * 119.73372 * 359.97438 * 25 24 23 27 27 C 1.38410 * 119.75765 * 180.02562 * 18 16 15 28 28 C 1.47432 * 125.64460 * 180.02562 * 9 7 2 29 29 H 0.97000 * 119.99905 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.87772 * 59.49766 * 10 9 7 31 31 H 1.09002 * 109.88063 * 298.33457 * 10 9 7 32 32 H 1.08996 * 110.71828 * 219.44201 * 11 10 9 33 33 H 1.09007 * 110.87202 * 96.24405 * 11 10 9 34 34 H 1.08992 * 109.47376 * 54.99898 * 14 12 11 35 35 H 1.08998 * 109.46973 * 294.99613 * 14 12 11 36 36 H 0.96998 * 120.00698 * 359.97438 * 15 14 12 37 37 H 1.08006 * 119.58571 * 0.04245 * 19 18 16 38 38 H 1.07994 * 119.95822 * 180.02562 * 20 19 18 39 39 H 1.08006 * 119.64412 * 180.02562 * 23 22 21 40 40 H 1.07996 * 119.66903 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.25032 * 0.24811 * 27 18 16 42 42 H 1.08995 * 110.36252 * 85.31532 * 28 9 7 43 43 H 1.08995 * 110.36476 * 322.98931 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1376 -2.5328 0.0016 11 6 -0.4486 -4.0441 -0.0249 12 6 0.8517 -4.6562 -0.6095 13 1 0.8564 -4.5972 -1.6979 14 6 1.0367 -6.1009 -0.1407 15 7 2.2056 -6.6836 -0.8042 16 6 2.5641 -7.9563 -0.5429 17 8 1.9171 -8.6207 0.2430 18 6 3.7436 -8.5447 -1.2129 19 6 4.4868 -7.7722 -2.1230 20 6 5.5736 -8.2900 -2.7500 21 6 5.9701 -9.6157 -2.4946 22 7 7.0384 -10.1420 -3.1044 23 6 7.3890 -11.3818 -2.8504 24 6 6.6582 -12.1598 -1.9483 25 7 5.6062 -11.6662 -1.3374 26 6 5.2290 -10.4053 -1.5796 27 6 4.1068 -9.8524 -0.9411 28 6 1.9334 -3.7312 0.0028 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5576 -2.0523 -0.8820 31 1 -0.5544 -2.0843 0.9035 32 1 -1.2986 -4.2515 -0.6749 33 1 -0.6335 -4.4203 0.9813 34 1 0.1491 -6.6811 -0.3927 35 1 1.1865 -6.1162 0.9388 36 1 2.7217 -6.1536 -1.4316 37 1 4.1898 -6.7536 -2.3248 38 1 6.1343 -7.6839 -3.4461 39 1 8.2520 -11.8046 -3.3434 40 1 6.9618 -13.1774 -1.7517 41 1 3.5300 -10.4440 -0.2456 42 1 2.1658 -4.0414 1.0215 43 1 2.8331 -3.7409 -0.6123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028973082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:14 Heat of formation + Delta-G solvation = 35.811191 kcal Electronic energy + Delta-G solvation = -25972.912423 eV Core-core repulsion = 22210.809249 eV Total energy + Delta-G solvation = -3762.103174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.49020 -41.01901 -39.32367 -38.09281 -36.18207 -35.83668 -34.37007 -32.36054 -31.70559 -31.42418 -29.89394 -27.57182 -26.62481 -25.63496 -24.99173 -23.37743 -22.45269 -21.81881 -21.35610 -19.80702 -19.39380 -18.77606 -18.17191 -17.63691 -17.05616 -16.71583 -16.58085 -16.22501 -15.89834 -15.69284 -15.60222 -15.20038 -14.88844 -14.84984 -14.65143 -13.97502 -13.80837 -13.59972 -13.46680 -13.07081 -12.91376 -12.84564 -12.81419 -12.75823 -12.74635 -12.60922 -12.02131 -11.91089 -11.83921 -11.54068 -11.44864 -11.15365 -10.69194 -10.27427 -10.18553 -10.02507 -9.73042 -8.88136 -7.83834 -5.19043 -1.04317 -0.64773 0.69734 1.26550 1.46772 1.48478 1.57015 1.97361 2.15883 2.50512 2.92957 2.97458 3.09932 3.17604 3.34530 3.50398 3.61331 3.75188 3.82459 3.86606 3.98165 4.02233 4.05963 4.12923 4.42204 4.45999 4.62701 4.64053 4.71150 4.73794 4.83294 4.91101 4.94439 5.01595 5.06237 5.10062 5.15058 5.29493 5.45559 5.47534 5.50005 5.69808 5.79962 6.18859 6.21711 6.42249 6.64646 7.06445 7.11906 7.79933 8.44063 9.26658 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020340 B = 0.002239 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.294956 B =12503.232052 C =13634.518324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.240 4.240 8 H 0.084 0.916 9 N -0.629 5.629 10 C 0.182 3.818 11 C -0.123 4.123 12 C -0.095 4.095 13 H 0.094 0.906 14 C 0.143 3.857 15 N -0.705 5.705 16 C 0.558 3.442 17 O -0.574 6.574 18 C -0.117 4.117 19 C -0.070 4.070 20 C -0.084 4.084 21 C 0.076 3.924 22 N -0.451 5.451 23 C 0.097 3.903 24 C 0.085 3.915 25 N -0.451 5.451 26 C 0.048 3.952 27 C -0.027 4.027 28 C 0.136 3.864 29 H 0.246 0.754 30 H 0.013 0.987 31 H 0.002 0.998 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.414 0.586 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.223 0.777 40 H 0.220 0.780 41 H 0.140 0.860 42 H 0.018 0.982 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.778 -24.496 -8.358 29.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.369 4.369 8 H 0.102 0.898 9 N -0.355 5.355 10 C 0.057 3.943 11 C -0.162 4.162 12 C -0.115 4.115 13 H 0.112 0.888 14 C 0.019 3.981 15 N -0.357 5.357 16 C 0.345 3.655 17 O -0.454 6.454 18 C -0.122 4.122 19 C -0.090 4.090 20 C -0.103 4.103 21 C -0.047 4.047 22 N -0.165 5.165 23 C -0.079 4.079 24 C -0.092 4.092 25 N -0.166 5.166 26 C -0.074 4.074 27 C -0.048 4.048 28 C 0.011 3.989 29 H 0.055 0.945 30 H 0.031 0.969 31 H 0.021 0.979 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.252 0.748 37 H 0.184 0.816 38 H 0.184 0.816 39 H 0.239 0.761 40 H 0.236 0.764 41 H 0.158 0.842 42 H 0.036 0.964 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.089 -24.491 -7.743 28.829 hybrid contribution 0.212 1.448 0.099 1.467 sum 13.300 -23.043 -7.644 27.682 Atomic orbital electron populations 1.70193 1.06314 1.25179 1.58473 1.25670 0.96620 1.01099 1.02865 0.85084 0.77596 0.79169 0.77523 1.21087 1.22415 1.19405 1.19473 0.91055 0.83737 1.42623 0.89793 1.44813 1.02493 1.01261 1.86981 1.20920 0.83856 0.91860 0.97631 1.22719 0.97219 0.94919 1.01322 1.22433 0.95962 0.92116 1.00961 0.88761 1.21250 0.87983 0.91892 0.96986 1.45847 1.31039 1.12602 1.46230 1.18339 0.83996 0.81862 0.81263 1.90776 1.55535 1.61866 1.37249 1.19908 0.97077 0.94909 1.00340 1.21278 0.93532 1.00894 0.93291 1.20964 0.96749 0.92451 1.00106 1.19918 0.93267 0.96467 0.95001 1.68823 1.12225 1.13909 1.21559 1.25002 0.99846 0.89150 0.93934 1.24936 0.89557 1.03245 0.91466 1.68705 1.14927 1.10752 1.22177 1.19482 0.97490 0.92116 0.98342 1.21189 0.93376 0.93916 0.96306 1.21806 0.95478 0.84373 0.97270 0.94508 0.96851 0.97946 0.89549 0.91098 0.90295 0.91923 0.74760 0.81583 0.81581 0.76098 0.76381 0.84185 0.96440 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.32 10.31 21.65 0.22 -57.09 16 2 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 3 Si 0.98 45.45 29.55 68.60 2.03 47.48 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.24 -13.21 10.28 84.04 0.86 -12.35 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.63 -31.44 3.39 -691.92 -2.35 -33.79 16 10 C 0.18 8.84 5.37 86.73 0.47 9.31 16 11 C -0.12 -4.20 6.42 31.78 0.20 -4.00 16 12 C -0.10 -2.80 3.05 -9.39 -0.03 -2.83 16 13 H 0.09 2.58 8.14 -2.39 -0.02 2.57 16 14 C 0.14 3.61 5.13 86.38 0.44 4.05 16 15 N -0.71 -15.54 5.45 -465.95 -2.54 -18.08 16 16 C 0.56 14.28 7.77 86.79 0.67 14.95 16 17 O -0.57 -19.05 16.30 -3.89 -0.06 -19.11 16 18 C -0.12 -2.52 5.87 -20.11 -0.12 -2.64 16 19 C -0.07 -1.11 9.44 22.27 0.21 -0.90 16 20 C -0.08 -1.35 9.95 22.29 0.22 -1.13 16 21 C 0.08 1.49 6.59 40.32 0.27 1.75 16 22 N -0.45 -7.52 10.46 -187.89 -1.96 -9.48 16 23 C 0.10 0.89 11.21 85.14 0.95 1.85 16 24 C 0.08 0.86 11.22 85.14 0.95 1.82 16 25 N -0.45 -8.75 10.46 -188.12 -1.97 -10.72 16 26 C 0.05 1.04 6.58 40.25 0.27 1.31 16 27 C -0.03 -0.64 9.56 22.85 0.22 -0.42 16 28 C 0.14 5.07 6.65 86.86 0.58 5.64 16 29 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 30 H 0.01 0.72 7.38 -2.39 -0.02 0.70 16 31 H 0.00 0.13 7.51 -2.39 -0.02 0.11 16 32 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.07 2.29 8.04 -2.38 -0.02 2.27 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 1.76 7.96 -2.39 -0.02 1.74 16 36 H 0.41 7.01 6.46 -92.71 -0.60 6.41 16 37 H 0.17 1.68 6.35 -2.91 -0.02 1.67 16 38 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.22 -0.16 8.06 -2.91 -0.02 -0.19 16 40 H 0.22 0.13 8.06 -2.91 -0.02 0.11 16 41 H 0.14 3.55 7.61 -2.91 -0.02 3.52 16 42 H 0.02 0.68 7.91 -2.39 -0.02 0.66 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -79.26 359.91 0.45 -78.81 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.45 Total: 9.07 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 6.64 Total: 12.92 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -8.60 Total: -129.17 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.06 Total: -19.11 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -79.26 0.45 -78.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028973082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.620 kcal (2) G-P(sol) polarization free energy of solvation -79.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds