Wall clock time and date at job start Tue Mar 31 2020 14:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00480 * 2 1 4 4 H 1.48506 * 109.46999 * 240.00099 * 3 2 1 5 5 H 1.48501 * 109.47115 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47501 * 120.00134 * 3 2 1 7 7 C 1.38818 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99963 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99883 * 359.97438 * 7 2 1 10 10 C 1.47868 * 126.94394 * 0.02562 * 9 7 2 11 11 C 1.55488 * 105.16987 * 181.92005 * 10 9 7 12 12 H 1.09003 * 116.03929 * 159.74706 * 11 10 9 13 13 C 1.57431 * 99.68716 * 32.85637 * 11 10 9 14 14 C 1.49289 * 126.94397 * 179.97438 * 9 7 2 15 15 H 1.09005 * 116.15192 * 15.85318 * 14 9 7 16 16 C 1.56009 * 104.09523 * 246.70226 * 14 9 7 17 17 N 1.47868 * 105.10792 * 288.76927 * 16 14 9 18 18 C 1.34769 * 126.94911 * 181.98092 * 17 16 14 19 19 O 1.21285 * 120.00411 * 180.02562 * 18 17 16 20 20 C 1.50709 * 119.99921 * 0.02562 * 18 17 16 21 21 C 1.50700 * 109.47217 * 180.02562 * 20 18 17 22 22 C 1.39688 * 119.13724 * 89.99695 * 21 20 18 23 23 C 1.35634 * 121.81224 * 179.97438 * 22 21 20 24 24 C 1.41152 * 119.59606 * 0.02562 * 23 22 21 25 25 N 1.32065 * 134.67362 * 180.02562 * 24 23 22 26 26 N 1.39961 * 108.95649 * 179.97438 * 25 24 23 27 27 H 0.96994 * 125.01774 * 179.97438 * 26 25 24 28 28 C 1.33981 * 109.95686 * 0.02562 * 26 25 24 29 29 C 1.38245 * 107.91117 * 359.97438 * 28 26 25 30 30 C 1.35655 * 119.13337 * 269.77546 * 21 20 18 31 31 H 0.96997 * 119.99586 * 359.97438 * 1 2 3 32 32 H 1.09005 * 110.31148 * 300.89878 * 10 9 7 33 33 H 1.08992 * 110.31876 * 62.99163 * 10 9 7 34 34 H 1.08999 * 112.53867 * 191.71415 * 13 11 10 35 35 H 1.08999 * 112.31587 * 64.17114 * 13 11 10 36 36 H 1.09000 * 110.31943 * 169.85976 * 16 14 9 37 37 H 1.09002 * 110.31759 * 47.67335 * 16 14 9 38 38 H 1.08995 * 109.47045 * 60.00123 * 20 18 17 39 39 H 1.08999 * 109.46561 * 299.99448 * 20 18 17 40 40 H 1.08001 * 119.09334 * 359.97438 * 22 21 20 41 41 H 1.07998 * 120.19801 * 179.97438 * 23 22 21 42 42 H 1.07999 * 126.04653 * 180.02562 * 28 26 25 43 43 H 1.07994 * 120.23686 * 359.92154 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1424 -2.5668 -0.0005 11 6 -0.3651 -4.1048 0.0497 12 1 -1.3443 -4.4355 0.3960 13 6 0.8837 -4.5253 0.9112 14 6 1.9100 -3.7618 -0.0016 15 1 2.9644 -3.8354 0.2648 16 6 1.5070 -4.3451 -1.3913 17 7 0.0504 -4.5829 -1.3017 18 6 -0.7430 -5.1177 -2.2508 19 8 -1.9298 -5.2558 -2.0422 20 6 -0.1555 -5.5443 -3.5715 21 6 -1.2454 -6.1048 -4.4485 22 6 -1.9460 -5.2441 -5.2968 23 6 -2.9363 -5.6904 -6.1091 24 6 -3.2771 -7.0601 -6.1051 25 7 -4.1608 -7.7989 -6.7511 26 7 -4.0384 -9.1276 -6.3285 27 1 -4.5759 -9.8667 -6.6534 28 6 -3.0700 -9.2273 -5.4080 29 6 -2.5394 -7.9660 -5.2108 30 6 -1.5172 -7.4329 -4.3968 31 1 -0.4849 0.8401 0.0004 32 1 -0.5814 -2.0914 0.8766 33 1 -0.5742 -2.1517 -0.9112 34 1 1.0489 -5.6027 0.9095 35 1 0.8449 -4.1192 1.9220 36 1 2.0328 -5.2820 -1.5754 37 1 1.7252 -3.6263 -2.1812 38 1 0.6035 -6.3079 -3.4019 39 1 0.2983 -4.6833 -4.0622 40 1 -1.6921 -4.1944 -5.3061 41 1 -3.4613 -5.0017 -6.7544 42 1 -2.7584 -10.1329 -4.9090 43 1 -0.9571 -8.0773 -3.7355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032516792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:50 Heat of formation + Delta-G solvation = 121.668473 kcal Electronic energy + Delta-G solvation = -27033.722325 eV Core-core repulsion = 23275.342203 eV Total energy + Delta-G solvation = -3758.380122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33100 -40.04410 -38.32580 -36.90675 -33.59235 -32.75585 -31.65277 -31.03573 -30.13699 -29.01820 -28.52459 -26.84896 -25.17405 -24.09988 -23.33887 -21.59038 -20.77206 -20.27758 -19.80663 -18.36759 -18.29143 -17.15183 -16.77194 -16.25187 -15.77542 -15.40478 -15.06802 -14.96221 -14.50000 -14.25855 -13.93280 -13.88709 -13.24207 -13.16866 -13.10213 -12.25840 -11.99548 -11.89031 -11.80621 -11.67163 -11.56209 -11.39867 -11.27600 -10.98581 -10.84314 -10.76356 -10.58643 -10.38680 -10.34182 -10.25033 -10.08312 -9.62630 -9.36957 -8.77019 -8.68303 -7.94555 -7.60490 -6.92011 -5.75972 -3.10733 0.56310 1.78087 2.37010 2.55345 3.13698 3.37735 3.42064 3.44162 3.44549 3.90544 4.17299 4.42423 4.50008 4.86595 4.93492 4.98750 5.09829 5.20752 5.24311 5.29449 5.40188 5.46086 5.57258 5.61200 5.64264 5.67571 5.71112 5.81261 5.94802 6.12893 6.21081 6.31351 6.41148 6.42317 6.43210 6.52699 6.61399 6.71768 6.72761 6.86653 6.91209 7.43391 7.47785 7.51113 7.73015 8.10550 8.17570 8.69074 9.10789 9.71765 10.41010 11.35870 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022632 B = 0.002714 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.907054 B =10312.822518 C =10945.289258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.233 4.233 8 H 0.080 0.920 9 N -0.597 5.597 10 C 0.173 3.827 11 C 0.099 3.901 12 H 0.112 0.888 13 C -0.150 4.150 14 C 0.140 3.860 15 H 0.106 0.894 16 C 0.084 3.916 17 N -0.608 5.608 18 C 0.527 3.473 19 O -0.547 6.547 20 C -0.095 4.095 21 C -0.089 4.089 22 C -0.052 4.052 23 C -0.110 4.110 24 C 0.108 3.892 25 N -0.313 5.313 26 N -0.431 5.431 27 H 0.441 0.559 28 C 0.077 3.923 29 C -0.200 4.200 30 C -0.035 4.035 31 H 0.254 0.746 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.186 0.814 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.711 -19.115 -8.755 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.361 4.361 8 H 0.098 0.902 9 N -0.322 5.322 10 C 0.048 3.952 11 C -0.004 4.004 12 H 0.130 0.870 13 C -0.190 4.190 14 C 0.031 3.969 15 H 0.123 0.877 16 C -0.042 4.042 17 N -0.343 5.343 18 C 0.316 3.684 19 O -0.425 6.425 20 C -0.134 4.134 21 C -0.091 4.091 22 C -0.074 4.074 23 C -0.132 4.132 24 C -0.046 4.046 25 N -0.142 5.142 26 N -0.131 5.131 27 H 0.285 0.715 28 C -0.080 4.080 29 C -0.210 4.210 30 C -0.056 4.056 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.203 0.797 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.429 -18.901 -9.627 21.350 hybrid contribution 0.770 0.533 0.398 1.017 sum -1.659 -18.368 -9.230 20.623 Atomic orbital electron populations 1.69912 1.04935 1.25426 1.56246 1.24823 0.95677 0.97707 1.02036 0.86202 0.78441 0.83213 0.77868 1.21163 1.21648 1.21135 1.18995 0.90351 0.82109 1.44621 0.90225 1.45240 1.01363 0.99276 1.86289 1.21822 0.84644 0.87404 1.01299 1.24267 0.97618 0.97540 0.80948 0.87019 1.24204 0.96826 0.98796 0.99166 1.23186 0.96472 0.86327 0.90907 0.87653 1.23289 0.80030 0.98816 1.02065 1.49233 1.09352 1.60164 1.15506 1.20069 0.86197 0.77534 0.84624 1.90689 1.15295 1.56244 1.80311 1.20626 0.97164 1.02579 0.93063 1.18717 0.98843 0.93159 0.98343 1.20593 0.93949 0.99592 0.93309 1.19799 0.99841 0.90883 1.02628 1.20964 0.93720 0.95180 0.94708 1.77649 1.24651 0.86780 1.25080 1.46262 1.27436 1.09352 1.30051 0.71500 1.22638 0.92110 0.99092 0.94118 1.19577 1.03840 0.92198 1.05339 1.19976 0.94867 0.94575 0.96133 0.93529 0.92747 0.93489 0.91693 0.89919 0.92850 0.91083 0.88562 0.88190 0.85486 0.85406 0.79673 0.86073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.63 10.56 55.49 0.59 -26.04 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.10 10.38 -15.06 -0.16 -6.26 16 8 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.60 -14.10 3.02 -156.64 -0.47 -14.57 16 10 C 0.17 4.13 4.75 -1.97 -0.01 4.12 16 11 C 0.10 1.90 5.22 -62.66 -0.33 1.57 16 12 H 0.11 2.13 8.05 -51.93 -0.42 1.71 16 13 C -0.15 -2.49 6.83 -22.07 -0.15 -2.64 16 14 C 0.14 2.50 5.53 -62.52 -0.35 2.16 16 15 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 16 C 0.08 1.34 6.01 -1.68 -0.01 1.33 16 17 N -0.61 -10.84 2.95 -156.91 -0.46 -11.30 16 18 C 0.53 9.30 7.89 -10.98 -0.09 9.21 16 19 O -0.55 -11.60 16.38 5.55 0.09 -11.51 16 20 C -0.09 -1.25 5.06 -29.03 -0.15 -1.40 16 21 C -0.09 -1.22 4.33 -105.00 -0.45 -1.67 16 22 C -0.05 -0.72 9.51 -39.97 -0.38 -1.10 16 23 C -0.11 -1.52 10.08 -39.41 -0.40 -1.92 16 24 C 0.11 1.54 7.49 -83.05 -0.62 0.91 16 25 N -0.31 -4.19 12.70 33.26 0.42 -3.77 16 26 N -0.43 -3.85 7.18 30.84 0.22 -3.63 16 27 H 0.44 2.08 8.96 -182.71 -1.64 0.44 16 28 C 0.08 0.67 12.07 -16.61 -0.20 0.47 16 29 C -0.20 -2.50 6.33 -105.19 -0.67 -3.17 16 30 C -0.04 -0.44 9.66 -39.41 -0.38 -0.82 16 31 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.05 1.44 7.46 -51.93 -0.39 1.05 16 33 H 0.05 1.29 7.67 -51.93 -0.40 0.89 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.10 1.02 8.06 -51.93 -0.42 0.60 16 39 H 0.10 1.24 8.07 -51.93 -0.42 0.82 16 40 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.19 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -35.43 357.65 -10.71 -46.14 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.03 Total: 2.23 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -4.43 Total: 0.57 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 0.29 Total: -59.31 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.43 -10.71 -46.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032516792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.810 kcal (2) G-P(sol) polarization free energy of solvation -35.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds