Wall clock time and date at job start Tue Mar 31 2020 14:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00480 * 2 1 4 4 H 1.48506 * 109.46999 * 240.00099 * 3 2 1 5 5 H 1.48501 * 109.47115 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47501 * 120.00134 * 3 2 1 7 7 C 1.38818 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99963 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99883 * 359.97438 * 7 2 1 10 10 C 1.47868 * 126.94394 * 0.02562 * 9 7 2 11 11 C 1.55488 * 105.16987 * 181.92005 * 10 9 7 12 12 H 1.09003 * 116.03929 * 159.74706 * 11 10 9 13 13 C 1.57431 * 99.68716 * 32.85637 * 11 10 9 14 14 C 1.49289 * 126.94397 * 179.97438 * 9 7 2 15 15 H 1.09005 * 116.15192 * 15.85318 * 14 9 7 16 16 C 1.56009 * 104.09523 * 246.70226 * 14 9 7 17 17 N 1.47868 * 105.10792 * 288.76927 * 16 14 9 18 18 C 1.34769 * 126.94911 * 181.98092 * 17 16 14 19 19 O 1.21285 * 120.00411 * 180.02562 * 18 17 16 20 20 C 1.50709 * 119.99921 * 0.02562 * 18 17 16 21 21 C 1.50700 * 109.47217 * 180.02562 * 20 18 17 22 22 C 1.39688 * 119.13724 * 89.99695 * 21 20 18 23 23 C 1.35634 * 121.81224 * 179.97438 * 22 21 20 24 24 C 1.41152 * 119.59606 * 0.02562 * 23 22 21 25 25 N 1.32065 * 134.67362 * 180.02562 * 24 23 22 26 26 N 1.39961 * 108.95649 * 179.97438 * 25 24 23 27 27 H 0.96994 * 125.01774 * 179.97438 * 26 25 24 28 28 C 1.33981 * 109.95686 * 0.02562 * 26 25 24 29 29 C 1.38245 * 107.91117 * 359.97438 * 28 26 25 30 30 C 1.35655 * 119.13337 * 269.77546 * 21 20 18 31 31 H 0.96997 * 119.99586 * 359.97438 * 1 2 3 32 32 H 1.09005 * 110.31148 * 300.89878 * 10 9 7 33 33 H 1.08992 * 110.31876 * 62.99163 * 10 9 7 34 34 H 1.08999 * 112.53867 * 191.71415 * 13 11 10 35 35 H 1.08999 * 112.31587 * 64.17114 * 13 11 10 36 36 H 1.09000 * 110.31943 * 169.85976 * 16 14 9 37 37 H 1.09002 * 110.31759 * 47.67335 * 16 14 9 38 38 H 1.08995 * 109.47045 * 60.00123 * 20 18 17 39 39 H 1.08999 * 109.46561 * 299.99448 * 20 18 17 40 40 H 1.08001 * 119.09334 * 359.97438 * 22 21 20 41 41 H 1.07998 * 120.19801 * 179.97438 * 23 22 21 42 42 H 1.07999 * 126.04653 * 180.02562 * 28 26 25 43 43 H 1.07994 * 120.23686 * 359.92154 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1424 -2.5668 -0.0005 11 6 -0.3651 -4.1048 0.0497 12 1 -1.3443 -4.4355 0.3960 13 6 0.8837 -4.5253 0.9112 14 6 1.9100 -3.7618 -0.0016 15 1 2.9644 -3.8354 0.2648 16 6 1.5070 -4.3451 -1.3913 17 7 0.0504 -4.5829 -1.3017 18 6 -0.7430 -5.1177 -2.2508 19 8 -1.9298 -5.2558 -2.0422 20 6 -0.1555 -5.5443 -3.5715 21 6 -1.2454 -6.1048 -4.4485 22 6 -1.9460 -5.2441 -5.2968 23 6 -2.9363 -5.6904 -6.1091 24 6 -3.2771 -7.0601 -6.1051 25 7 -4.1608 -7.7989 -6.7511 26 7 -4.0384 -9.1276 -6.3285 27 1 -4.5759 -9.8667 -6.6534 28 6 -3.0700 -9.2273 -5.4080 29 6 -2.5394 -7.9660 -5.2108 30 6 -1.5172 -7.4329 -4.3968 31 1 -0.4849 0.8401 0.0004 32 1 -0.5814 -2.0914 0.8766 33 1 -0.5742 -2.1517 -0.9112 34 1 1.0489 -5.6027 0.9095 35 1 0.8449 -4.1192 1.9220 36 1 2.0328 -5.2820 -1.5754 37 1 1.7252 -3.6263 -2.1812 38 1 0.6035 -6.3079 -3.4019 39 1 0.2983 -4.6833 -4.0622 40 1 -1.6921 -4.1944 -5.3061 41 1 -3.4613 -5.0017 -6.7544 42 1 -2.7584 -10.1329 -4.9090 43 1 -0.9571 -8.0773 -3.7355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032516792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:49 Heat of formation + Delta-G solvation = 98.123204 kcal Electronic energy + Delta-G solvation = -27034.743325 eV Core-core repulsion = 23275.342203 eV Total energy + Delta-G solvation = -3759.401122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.18443 -41.49352 -39.61991 -38.02969 -35.39145 -33.79713 -33.18534 -32.04992 -31.21173 -30.50428 -30.16181 -27.84276 -26.91536 -25.27753 -24.75044 -22.76479 -21.65596 -21.56722 -21.34473 -19.90495 -19.08148 -18.75096 -17.86379 -17.61324 -17.30787 -16.61453 -16.34456 -16.00214 -15.81003 -15.63883 -15.41086 -14.85427 -14.72129 -14.57223 -13.98092 -13.78104 -13.52060 -13.31303 -13.07463 -12.91017 -12.87019 -12.74216 -12.62034 -12.57479 -12.33543 -12.25063 -12.11606 -12.04002 -11.81097 -11.48428 -11.28325 -11.25158 -10.85025 -10.62067 -9.68016 -9.42789 -8.86794 -8.51448 -7.81251 -5.16813 -0.28266 0.80947 1.48264 1.50146 1.51094 1.57142 1.78822 1.90137 2.14563 2.51259 2.89440 3.31230 3.36792 3.44533 3.74417 3.77733 3.87188 3.98233 4.01347 4.13564 4.21921 4.26368 4.28489 4.48202 4.58549 4.62532 4.68678 4.72904 4.73997 4.83670 4.93226 5.02533 5.08638 5.21000 5.23254 5.32078 5.45125 5.49497 5.50202 5.60667 5.69203 5.76175 5.95731 6.13640 6.31690 6.61417 6.80816 7.06098 7.32800 7.74929 8.45627 9.29544 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022632 B = 0.002714 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.907054 B =10312.822518 C =10945.289258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.074 4.074 3 Si 0.976 3.024 4 H -0.276 1.276 5 H -0.305 1.305 6 H -0.274 1.274 7 C -0.228 4.228 8 H 0.097 0.903 9 N -0.618 5.618 10 C 0.187 3.813 11 C 0.100 3.900 12 H 0.107 0.893 13 C -0.127 4.127 14 C 0.133 3.867 15 H 0.136 0.864 16 C 0.091 3.909 17 N -0.611 5.611 18 C 0.522 3.478 19 O -0.590 6.590 20 C -0.079 4.079 21 C -0.122 4.122 22 C -0.062 4.062 23 C -0.135 4.135 24 C 0.083 3.917 25 N -0.356 5.356 26 N -0.415 5.415 27 H 0.460 0.540 28 C 0.118 3.882 29 C -0.238 4.238 30 C -0.019 4.019 31 H 0.242 0.758 32 H 0.013 0.987 33 H -0.006 1.006 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.053 0.947 38 H 0.135 0.865 39 H 0.104 0.896 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.243 0.757 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.946 -23.243 -8.668 24.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.266 4.266 3 Si 0.805 3.195 4 H -0.202 1.202 5 H -0.232 1.232 6 H -0.199 1.199 7 C -0.357 4.357 8 H 0.115 0.885 9 N -0.342 5.342 10 C 0.061 3.939 11 C -0.004 4.004 12 H 0.125 0.875 13 C -0.166 4.166 14 C 0.027 3.973 15 H 0.154 0.846 16 C -0.033 4.033 17 N -0.345 5.345 18 C 0.312 3.688 19 O -0.471 6.471 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.084 4.084 23 C -0.156 4.156 24 C -0.069 4.069 25 N -0.186 5.186 26 N -0.117 5.117 27 H 0.308 0.692 28 C -0.041 4.041 29 C -0.248 4.248 30 C -0.039 4.039 31 H 0.051 0.949 32 H 0.031 0.969 33 H 0.012 0.988 34 H 0.124 0.876 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.072 0.928 38 H 0.153 0.847 39 H 0.123 0.877 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.259 0.741 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.273 -23.081 -9.570 24.988 hybrid contribution -0.109 1.637 0.357 1.679 sum 0.164 -21.444 -9.213 23.339 Atomic orbital electron populations 1.70171 1.06641 1.25074 1.58897 1.25670 0.96362 1.01226 1.03362 0.85174 0.76965 0.78947 0.78385 1.20166 1.23240 1.19940 1.19516 0.91283 0.83156 1.41736 0.88540 1.45509 1.01394 1.01215 1.86095 1.21403 0.85055 0.90578 0.96870 1.24046 0.99100 0.93944 0.83281 0.87468 1.24097 0.93756 1.00908 0.97822 1.23648 0.98165 0.83058 0.92433 0.84639 1.23228 0.79145 1.00925 0.99997 1.49331 1.10304 1.59893 1.14942 1.20937 0.85658 0.76552 0.85607 1.90665 1.17301 1.58012 1.81160 1.20585 0.97531 1.03758 0.89957 1.18809 1.00169 0.93945 0.99486 1.20709 0.94246 0.99726 0.93723 1.19910 1.00594 0.91629 1.03505 1.21168 0.94500 0.95623 0.95635 1.77577 1.25688 0.88631 1.26668 1.46348 1.27282 1.08679 1.29356 0.69225 1.23485 0.89419 0.99461 0.91689 1.19995 1.04956 0.93559 1.06298 1.20315 0.94063 0.94389 0.95177 0.94871 0.96927 0.98769 0.87580 0.90610 0.87316 0.92813 0.84739 0.87738 0.85885 0.85404 0.74107 0.83177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.90 10.56 21.65 0.23 -58.67 16 2 C -0.07 -4.15 5.49 84.86 0.47 -3.68 16 3 Si 0.98 45.26 29.55 68.60 2.03 47.28 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.31 -14.75 7.11 99.48 0.71 -14.05 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.23 -11.96 10.38 84.03 0.87 -11.09 16 8 H 0.10 4.63 7.83 -2.91 -0.02 4.60 16 9 N -0.62 -29.20 3.02 -649.50 -1.96 -31.16 16 10 C 0.19 9.36 4.75 86.97 0.41 9.78 16 11 C 0.10 3.83 5.22 46.88 0.24 4.07 16 12 H 0.11 4.18 8.05 -2.39 -0.02 4.16 16 13 C -0.13 -3.82 6.83 33.61 0.23 -3.59 16 14 C 0.13 4.36 5.53 46.95 0.26 4.62 16 15 H 0.14 3.66 8.14 -2.38 -0.02 3.64 16 16 C 0.09 2.62 6.01 87.16 0.52 3.15 16 17 N -0.61 -20.86 2.95 -768.74 -2.27 -23.12 16 18 C 0.52 17.87 7.89 87.66 0.69 18.56 16 19 O -0.59 -25.29 16.38 -3.04 -0.05 -25.34 16 20 C -0.08 -1.92 5.06 29.10 0.15 -1.77 16 21 C -0.12 -3.23 4.33 -20.11 -0.09 -3.32 16 22 C -0.06 -1.78 9.51 22.02 0.21 -1.57 16 23 C -0.14 -3.95 10.08 22.38 0.23 -3.73 16 24 C 0.08 2.38 7.49 42.16 0.32 2.70 16 25 N -0.36 -9.39 12.70 -48.70 -0.62 -10.01 16 26 N -0.42 -6.28 7.18 -56.35 -0.40 -6.68 16 27 H 0.46 2.87 8.96 -213.42 -1.91 0.96 16 28 C 0.12 1.56 12.07 84.37 1.02 2.58 16 29 C -0.24 -5.45 6.33 -20.23 -0.13 -5.58 16 30 C -0.02 -0.44 9.66 22.38 0.22 -0.22 16 31 H 0.24 14.77 8.31 -92.71 -0.77 14.00 16 32 H 0.01 0.72 7.46 -2.38 -0.02 0.70 16 33 H -0.01 -0.35 7.67 -2.39 -0.02 -0.37 16 34 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.08 2.42 8.14 -2.39 -0.02 2.41 16 36 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.13 2.18 8.06 -2.39 -0.02 2.16 16 39 H 0.10 2.44 8.07 -2.39 -0.02 2.42 16 40 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 41 H 0.13 3.44 8.06 -2.91 -0.02 3.41 16 42 H 0.24 0.30 8.06 -2.91 -0.02 0.28 16 43 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -85.07 357.65 1.70 -83.36 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -0.87 Total: 13.45 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 5.62 Total: 10.90 kcal Atomic # 7 Polarization: -124.63 SS G_CDS: -5.02 Total: -129.65 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.05 Total: -25.34 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -85.07 1.70 -83.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032516792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.487 kcal (2) G-P(sol) polarization free energy of solvation -85.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds