Wall clock time and date at job start Tue Mar 31 2020 15:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99991 * 2 1 4 4 H 1.48500 * 109.46912 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47001 * 300.00080 * 3 2 1 6 6 H 1.48504 * 109.47269 * 59.99934 * 3 2 1 7 7 C 1.38807 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99975 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00052 * 0.02562 * 7 2 1 10 10 C 1.47866 * 126.94435 * 0.02562 * 9 7 2 11 11 C 1.56018 * 105.10380 * 181.98250 * 10 9 7 12 12 H 1.09004 * 116.89191 * 159.20775 * 11 10 9 13 13 C 1.57075 * 99.60756 * 32.80690 * 11 10 9 14 14 C 1.49292 * 126.94544 * 179.97438 * 9 7 2 15 15 H 1.08995 * 116.15052 * 16.72686 * 14 9 7 16 16 C 1.55996 * 104.31845 * 246.63735 * 14 9 7 17 17 N 1.47873 * 105.11459 * 289.11341 * 16 14 9 18 18 C 1.34774 * 126.94222 * 181.87521 * 17 16 14 19 19 O 1.21278 * 119.99705 * 179.68199 * 18 17 16 20 20 C 1.50695 * 120.00128 * 359.68788 * 18 17 16 21 21 C 1.50703 * 109.47008 * 179.97438 * 20 18 17 22 22 N 1.30242 * 126.10466 * 89.97629 * 21 20 18 23 23 N 1.39874 * 110.08537 * 180.02562 * 22 21 20 24 24 H 0.97003 * 125.46294 * 179.97438 * 23 22 21 25 25 C 1.37042 * 109.07643 * 359.97438 * 23 22 21 26 26 C 1.39283 * 133.84841 * 179.97438 * 25 23 22 27 27 C 1.36594 * 119.84993 * 180.02562 * 26 25 23 28 28 C 1.38969 * 120.81553 * 0.02562 * 27 26 25 29 29 C 1.36468 * 120.62621 * 0.26056 * 28 27 26 30 30 C 1.39948 * 119.63574 * 359.44830 * 29 28 27 31 31 H 0.97004 * 119.99357 * 0.02562 * 1 2 3 32 32 H 1.09005 * 110.31518 * 63.07331 * 10 9 7 33 33 H 1.09000 * 110.31485 * 300.88838 * 10 9 7 34 34 H 1.08992 * 112.37091 * 64.27219 * 13 11 10 35 35 H 1.09003 * 112.36972 * 191.71740 * 13 11 10 36 36 H 1.08999 * 110.41559 * 170.15092 * 16 14 9 37 37 H 1.09004 * 110.20182 * 47.96952 * 16 14 9 38 38 H 1.08994 * 109.47473 * 59.99804 * 20 18 17 39 39 H 1.09002 * 109.46866 * 299.99473 * 20 18 17 40 40 H 1.08003 * 120.07603 * 0.02698 * 26 25 23 41 41 H 1.07999 * 119.58987 * 180.02562 * 27 26 25 42 42 H 1.08002 * 119.68304 * 179.97438 * 28 27 26 43 43 H 1.08000 * 120.17979 * 179.72103 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1422 -2.5668 -0.0005 11 6 -0.3638 -4.1103 0.0521 12 1 -1.3352 -4.4572 0.4047 13 6 0.8833 -4.5250 0.9124 14 6 1.9102 -3.7617 0.0005 15 1 2.9605 -3.8368 0.2821 16 6 1.5098 -4.3514 -1.3870 17 7 0.0519 -4.5833 -1.3012 18 6 -0.7404 -5.1189 -2.2509 19 8 -1.9272 -5.2574 -2.0432 20 6 -0.1516 -5.5457 -3.5708 21 6 -1.2402 -6.1082 -4.4481 22 7 -1.9757 -5.4345 -5.2856 23 7 -2.8809 -6.2884 -5.9245 24 1 -3.5334 -6.0204 -6.5903 25 6 -2.6980 -7.5642 -5.4589 26 6 -3.3037 -8.7879 -5.7343 27 6 -2.8856 -9.9147 -5.0852 28 6 -1.8601 -9.8580 -4.1491 29 6 -1.2522 -8.6722 -3.8548 30 6 -1.6585 -7.5047 -4.5110 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5732 -2.1535 -0.9125 33 1 -0.5820 -2.0913 0.8762 34 1 0.8437 -4.1188 1.9230 35 1 1.0485 -5.6024 0.9110 36 1 2.0325 -5.2910 -1.5660 37 1 1.7333 -3.6362 -2.1787 38 1 0.6077 -6.3089 -3.4001 39 1 0.3024 -4.6848 -4.0614 40 1 -4.1021 -8.8456 -6.4593 41 1 -3.3579 -10.8614 -5.3023 42 1 -1.5443 -10.7603 -3.6465 43 1 -0.4589 -8.6357 -3.1229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032799524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:31 Heat of formation + Delta-G solvation = 113.174010 kcal Electronic energy + Delta-G solvation = -27263.602785 eV Core-core repulsion = 23504.854315 eV Total energy + Delta-G solvation = -3758.748470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36728 -40.00884 -37.90645 -37.19454 -33.64049 -33.34808 -31.64254 -30.44704 -29.82810 -29.17245 -28.59166 -27.88226 -25.19263 -23.55093 -23.12826 -22.28502 -21.31150 -19.89853 -19.64897 -18.38501 -17.91231 -17.23507 -16.98647 -16.31760 -15.72908 -15.39304 -15.14266 -14.82310 -14.57294 -14.25302 -14.03960 -13.87374 -13.47643 -13.31586 -12.94523 -12.23160 -12.20260 -12.03300 -11.97225 -11.85046 -11.65264 -11.30928 -11.20984 -11.00856 -10.86470 -10.79138 -10.72870 -10.60085 -10.26509 -10.23674 -10.05112 -9.64505 -9.43906 -8.76727 -8.70730 -8.07713 -7.99568 -6.93056 -5.76849 -3.11671 0.85063 1.40571 2.34599 2.61884 3.04268 3.37104 3.41964 3.43138 3.45433 3.71570 4.34696 4.41554 4.44933 4.61842 4.82983 4.83896 5.06240 5.16820 5.18465 5.24412 5.30626 5.39296 5.41842 5.55830 5.57122 5.64069 5.70697 5.77570 5.84636 5.92197 6.15764 6.21534 6.28620 6.34518 6.38494 6.40787 6.49831 6.59296 6.69527 6.73726 7.22587 7.42936 7.49900 7.56919 7.72763 8.07762 8.11168 8.58913 9.09951 9.71051 10.39853 11.35132 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023005 B = 0.002887 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.851660 B = 9696.768909 C =10315.326217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.231 4.231 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.174 3.826 11 C 0.099 3.901 12 H 0.113 0.887 13 C -0.152 4.152 14 C 0.141 3.859 15 H 0.107 0.893 16 C 0.081 3.919 17 N -0.606 5.606 18 C 0.534 3.466 19 O -0.545 6.545 20 C -0.060 4.060 21 C 0.130 3.870 22 N -0.236 5.236 23 N -0.510 5.510 24 H 0.439 0.561 25 C 0.129 3.871 26 C -0.145 4.145 27 C -0.072 4.072 28 C -0.164 4.164 29 C -0.035 4.035 30 C -0.163 4.163 31 H 0.253 0.747 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.796 -19.681 -8.622 21.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.359 4.359 8 H 0.099 0.901 9 N -0.322 5.322 10 C 0.049 3.951 11 C -0.003 4.003 12 H 0.130 0.870 13 C -0.192 4.192 14 C 0.032 3.968 15 H 0.125 0.875 16 C -0.044 4.044 17 N -0.340 5.340 18 C 0.321 3.679 19 O -0.423 6.423 20 C -0.102 4.102 21 C -0.049 4.049 22 N -0.049 5.049 23 N -0.224 5.224 24 H 0.283 0.717 25 C 0.013 3.987 26 C -0.167 4.167 27 C -0.093 4.093 28 C -0.183 4.183 29 C -0.055 4.055 30 C -0.171 4.171 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.787 -18.302 -9.113 20.523 hybrid contribution 0.070 0.424 -0.223 0.484 sum -1.717 -17.878 -9.336 20.242 Atomic orbital electron populations 1.69934 1.04948 1.25201 1.56375 1.24831 0.95682 0.97749 1.02045 0.86050 0.78672 0.83770 0.77246 1.20446 1.21795 1.21760 1.19083 0.90413 0.82041 1.44402 0.90070 1.45249 1.01349 0.99312 1.86249 1.21911 0.84664 0.87153 1.01337 1.24336 0.97745 0.97639 0.80575 0.86954 1.24182 0.96860 0.98906 0.99252 1.23165 0.96570 0.86287 0.90797 0.87526 1.23318 0.79806 0.99010 1.02277 1.49165 1.09373 1.60022 1.15416 1.19693 0.86186 0.77783 0.84280 1.90703 1.15230 1.56200 1.80206 1.20029 0.94918 1.03032 0.92196 1.22722 0.96532 0.90030 0.95643 1.76585 1.02072 1.16614 1.09664 1.45871 1.34180 1.03144 1.39187 0.71674 1.18852 0.96672 0.87264 0.95933 1.19796 1.02866 0.89674 1.04377 1.20689 0.96004 0.97506 0.95068 1.20633 0.98986 0.97784 1.00928 1.20366 0.98161 0.90467 0.96511 1.19721 1.00989 0.93857 1.02522 0.93630 0.93448 0.92659 0.89813 0.91619 0.92590 0.90934 0.86932 0.86844 0.85835 0.85505 0.85664 0.85609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 10.56 55.49 0.59 -26.20 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.23 -6.07 10.37 -15.06 -0.16 -6.23 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.10 3.03 -156.33 -0.47 -14.58 16 10 C 0.17 4.17 4.76 -1.68 -0.01 4.17 16 11 C 0.10 1.91 5.24 -62.57 -0.33 1.58 16 12 H 0.11 2.13 8.06 -51.93 -0.42 1.72 16 13 C -0.15 -2.49 6.81 -22.29 -0.15 -2.65 16 14 C 0.14 2.50 5.52 -62.54 -0.35 2.15 16 15 H 0.11 1.68 8.14 -51.93 -0.42 1.25 16 16 C 0.08 1.30 6.01 -1.69 -0.01 1.29 16 17 N -0.61 -10.84 2.95 -156.81 -0.46 -11.31 16 18 C 0.53 9.70 7.89 -10.99 -0.09 9.61 16 19 O -0.55 -11.97 16.38 5.56 0.09 -11.88 16 20 C -0.06 -0.85 5.58 -29.04 -0.16 -1.01 16 21 C 0.13 2.01 5.92 -80.19 -0.48 1.54 16 22 N -0.24 -3.85 12.55 34.84 0.44 -3.42 16 23 N -0.51 -6.74 7.37 32.36 0.24 -6.51 16 24 H 0.44 4.27 8.96 -182.77 -1.64 2.63 16 25 C 0.13 1.68 7.34 -84.17 -0.62 1.06 16 26 C -0.14 -1.46 10.03 -39.79 -0.40 -1.86 16 27 C -0.07 -0.65 9.96 -39.90 -0.40 -1.04 16 28 C -0.16 -1.57 9.97 -39.95 -0.40 -1.97 16 29 C -0.03 -0.40 10.07 -39.58 -0.40 -0.80 16 30 C -0.16 -2.30 6.33 -105.21 -0.67 -2.97 16 31 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.05 1.32 7.68 -51.93 -0.40 0.92 16 33 H 0.06 1.46 7.46 -51.93 -0.39 1.08 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.11 1.53 8.14 -51.93 -0.42 1.10 16 40 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 41 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 358.52 15.07 5.40 5.40 Total: -1.00 -34.85 358.52 -10.94 -45.79 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.04 Total: 3.48 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -4.70 Total: 2.60 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: 0.33 Total: -62.00 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.85 -10.94 -45.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032799524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.960 kcal (2) G-P(sol) polarization free energy of solvation -34.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds