Wall clock time and date at job start Tue Mar 31 2020 15:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99991 * 2 1 4 4 H 1.48500 * 109.46912 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47001 * 300.00080 * 3 2 1 6 6 H 1.48504 * 109.47269 * 59.99934 * 3 2 1 7 7 C 1.38807 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99975 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00052 * 0.02562 * 7 2 1 10 10 C 1.47866 * 126.94435 * 0.02562 * 9 7 2 11 11 C 1.56018 * 105.10380 * 181.98250 * 10 9 7 12 12 H 1.09004 * 116.89191 * 159.20775 * 11 10 9 13 13 C 1.57075 * 99.60756 * 32.80690 * 11 10 9 14 14 C 1.49292 * 126.94544 * 179.97438 * 9 7 2 15 15 H 1.08995 * 116.15052 * 16.72686 * 14 9 7 16 16 C 1.55996 * 104.31845 * 246.63735 * 14 9 7 17 17 N 1.47873 * 105.11459 * 289.11341 * 16 14 9 18 18 C 1.34774 * 126.94222 * 181.87521 * 17 16 14 19 19 O 1.21278 * 119.99705 * 179.68199 * 18 17 16 20 20 C 1.50695 * 120.00128 * 359.68788 * 18 17 16 21 21 C 1.50703 * 109.47008 * 179.97438 * 20 18 17 22 22 N 1.30242 * 126.10466 * 89.97629 * 21 20 18 23 23 N 1.39874 * 110.08537 * 180.02562 * 22 21 20 24 24 H 0.97003 * 125.46294 * 179.97438 * 23 22 21 25 25 C 1.37042 * 109.07643 * 359.97438 * 23 22 21 26 26 C 1.39283 * 133.84841 * 179.97438 * 25 23 22 27 27 C 1.36594 * 119.84993 * 180.02562 * 26 25 23 28 28 C 1.38969 * 120.81553 * 0.02562 * 27 26 25 29 29 C 1.36468 * 120.62621 * 0.26056 * 28 27 26 30 30 C 1.39948 * 119.63574 * 359.44830 * 29 28 27 31 31 H 0.97004 * 119.99357 * 0.02562 * 1 2 3 32 32 H 1.09005 * 110.31518 * 63.07331 * 10 9 7 33 33 H 1.09000 * 110.31485 * 300.88838 * 10 9 7 34 34 H 1.08992 * 112.37091 * 64.27219 * 13 11 10 35 35 H 1.09003 * 112.36972 * 191.71740 * 13 11 10 36 36 H 1.08999 * 110.41559 * 170.15092 * 16 14 9 37 37 H 1.09004 * 110.20182 * 47.96952 * 16 14 9 38 38 H 1.08994 * 109.47473 * 59.99804 * 20 18 17 39 39 H 1.09002 * 109.46866 * 299.99473 * 20 18 17 40 40 H 1.08003 * 120.07603 * 0.02698 * 26 25 23 41 41 H 1.07999 * 119.58987 * 180.02562 * 27 26 25 42 42 H 1.08002 * 119.68304 * 179.97438 * 28 27 26 43 43 H 1.08000 * 120.17979 * 179.72103 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1422 -2.5668 -0.0005 11 6 -0.3638 -4.1103 0.0521 12 1 -1.3352 -4.4572 0.4047 13 6 0.8833 -4.5250 0.9124 14 6 1.9102 -3.7617 0.0005 15 1 2.9605 -3.8368 0.2821 16 6 1.5098 -4.3514 -1.3870 17 7 0.0519 -4.5833 -1.3012 18 6 -0.7404 -5.1189 -2.2509 19 8 -1.9272 -5.2574 -2.0432 20 6 -0.1516 -5.5457 -3.5708 21 6 -1.2402 -6.1082 -4.4481 22 7 -1.9757 -5.4345 -5.2856 23 7 -2.8809 -6.2884 -5.9245 24 1 -3.5334 -6.0204 -6.5903 25 6 -2.6980 -7.5642 -5.4589 26 6 -3.3037 -8.7879 -5.7343 27 6 -2.8856 -9.9147 -5.0852 28 6 -1.8601 -9.8580 -4.1491 29 6 -1.2522 -8.6722 -3.8548 30 6 -1.6585 -7.5047 -4.5110 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5732 -2.1535 -0.9125 33 1 -0.5820 -2.0913 0.8762 34 1 0.8437 -4.1188 1.9230 35 1 1.0485 -5.6024 0.9110 36 1 2.0325 -5.2910 -1.5660 37 1 1.7333 -3.6362 -2.1787 38 1 0.6077 -6.3089 -3.4001 39 1 0.3024 -4.6848 -4.0614 40 1 -4.1021 -8.8456 -6.4593 41 1 -3.3579 -10.8614 -5.3023 42 1 -1.5443 -10.7603 -3.6465 43 1 -0.4589 -8.6357 -3.1229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032799524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:31 Heat of formation + Delta-G solvation = 90.076889 kcal Electronic energy + Delta-G solvation = -27264.604351 eV Core-core repulsion = 23504.854315 eV Total energy + Delta-G solvation = -3759.750036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.31915 -41.48934 -39.38088 -38.05710 -35.44512 -34.43342 -33.29543 -31.48517 -30.83313 -30.52767 -30.20803 -29.06380 -26.94754 -25.21066 -23.96458 -23.15004 -22.73837 -21.39004 -20.96176 -19.87556 -18.88551 -18.77663 -17.95305 -17.85450 -17.32865 -16.55078 -16.32620 -16.10513 -15.82930 -15.53067 -15.36526 -14.92870 -14.85054 -14.63480 -14.16653 -13.75543 -13.57509 -13.33844 -13.19180 -13.07911 -12.83439 -12.79895 -12.78054 -12.73655 -12.27518 -12.10913 -11.98464 -11.97504 -11.84497 -11.72607 -11.50865 -11.30570 -10.90495 -10.68349 -9.64726 -9.50653 -8.94609 -8.88768 -7.83297 -5.18902 -0.00339 0.58924 1.29990 1.47084 1.47550 1.57835 1.64336 1.70939 2.13077 2.49475 2.88720 3.35000 3.35550 3.40991 3.54873 3.66291 3.75567 3.88387 3.94417 4.06959 4.17442 4.25664 4.29844 4.43103 4.44879 4.50849 4.62434 4.68107 4.75346 4.88224 4.97081 4.99457 5.07182 5.09325 5.19282 5.30293 5.37890 5.48028 5.52928 5.56492 5.62889 5.67202 5.98567 6.11564 6.38111 6.57646 6.68386 7.04087 7.17319 7.73047 8.43412 9.28001 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023005 B = 0.002887 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.851660 B = 9696.768909 C =10315.326217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.076 4.076 3 Si 0.976 3.024 4 H -0.255 1.255 5 H -0.302 1.302 6 H -0.298 1.298 7 C -0.224 4.224 8 H 0.099 0.901 9 N -0.618 5.618 10 C 0.188 3.812 11 C 0.100 3.900 12 H 0.108 0.892 13 C -0.128 4.128 14 C 0.135 3.865 15 H 0.139 0.861 16 C 0.087 3.913 17 N -0.607 5.607 18 C 0.530 3.470 19 O -0.591 6.591 20 C -0.050 4.050 21 C 0.113 3.887 22 N -0.281 5.281 23 N -0.509 5.509 24 H 0.448 0.552 25 C 0.109 3.891 26 C -0.151 4.151 27 C -0.066 4.066 28 C -0.159 4.159 29 C -0.052 4.052 30 C -0.191 4.191 31 H 0.242 0.758 32 H -0.008 1.008 33 H 0.014 0.986 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.055 0.945 38 H 0.156 0.844 39 H 0.116 0.884 40 H 0.148 0.852 41 H 0.164 0.836 42 H 0.156 0.844 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 -23.660 -8.874 25.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.268 4.268 3 Si 0.805 3.195 4 H -0.179 1.179 5 H -0.230 1.230 6 H -0.226 1.226 7 C -0.353 4.353 8 H 0.117 0.883 9 N -0.342 5.342 10 C 0.061 3.939 11 C -0.003 4.003 12 H 0.126 0.874 13 C -0.167 4.167 14 C 0.029 3.971 15 H 0.157 0.843 16 C -0.037 4.037 17 N -0.340 5.340 18 C 0.319 3.681 19 O -0.473 6.473 20 C -0.091 4.091 21 C -0.065 4.065 22 N -0.095 5.095 23 N -0.225 5.225 24 H 0.294 0.706 25 C -0.007 4.007 26 C -0.173 4.173 27 C -0.087 4.087 28 C -0.178 4.178 29 C -0.072 4.072 30 C -0.199 4.199 31 H 0.051 0.949 32 H 0.010 0.990 33 H 0.032 0.968 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.073 0.927 38 H 0.173 0.827 39 H 0.134 0.866 40 H 0.166 0.834 41 H 0.181 0.819 42 H 0.174 0.826 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.632 -22.332 -9.374 24.228 hybrid contribution -0.705 1.524 -0.163 1.687 sum -0.073 -20.808 -9.537 22.890 Atomic orbital electron populations 1.70189 1.06699 1.24898 1.59119 1.25683 0.96368 1.01294 1.03465 0.85033 0.78716 0.79693 0.76057 1.17885 1.23027 1.22582 1.19602 0.91344 0.83051 1.41290 0.88318 1.45522 1.01334 1.01325 1.86025 1.21482 0.85161 0.90385 0.96827 1.24121 0.99411 0.93973 0.82793 0.87363 1.24079 0.93600 1.01122 0.97902 1.23638 0.98353 0.82906 0.92241 0.84305 1.23305 0.78730 1.01335 1.00282 1.49232 1.10414 1.59529 1.14815 1.20394 0.85605 0.76893 0.85204 1.90676 1.17340 1.58113 1.81124 1.20065 0.95290 1.04322 0.89396 1.22996 0.96769 0.91114 0.95669 1.76453 1.03495 1.18444 1.11140 1.45834 1.34050 1.03280 1.39369 0.70566 1.19309 0.97253 0.87825 0.96312 1.20209 1.03282 0.88835 1.05001 1.21199 0.95244 0.98491 0.93730 1.21086 0.98209 0.98133 1.00364 1.20675 0.99180 0.90319 0.97014 1.20017 1.02030 0.93973 1.03877 0.94929 0.98978 0.96755 0.90386 0.87359 0.86738 0.92657 0.82657 0.86575 0.83398 0.81882 0.82620 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.48 10.56 21.65 0.23 -59.25 16 2 C -0.08 -4.29 5.49 84.86 0.47 -3.82 16 3 Si 0.98 45.59 29.55 68.60 2.03 47.61 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 6 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 7 C -0.22 -11.76 10.37 84.03 0.87 -10.89 16 8 H 0.10 4.73 7.83 -2.91 -0.02 4.71 16 9 N -0.62 -29.24 3.03 -648.52 -1.96 -31.20 16 10 C 0.19 9.47 4.76 87.16 0.42 9.89 16 11 C 0.10 3.87 5.24 46.93 0.25 4.12 16 12 H 0.11 4.24 8.06 -2.38 -0.02 4.22 16 13 C -0.13 -3.82 6.81 33.47 0.23 -3.59 16 14 C 0.13 4.37 5.52 46.94 0.26 4.63 16 15 H 0.14 3.67 8.14 -2.39 -0.02 3.65 16 16 C 0.09 2.50 6.01 87.15 0.52 3.03 16 17 N -0.61 -21.08 2.95 -768.43 -2.26 -23.34 16 18 C 0.53 19.13 7.89 87.66 0.69 19.82 16 19 O -0.59 -26.71 16.38 -3.02 -0.05 -26.76 16 20 C -0.05 -1.35 5.58 29.10 0.16 -1.19 16 21 C 0.11 3.51 5.92 44.79 0.27 3.77 16 22 N -0.28 -9.52 12.55 -43.70 -0.55 -10.07 16 23 N -0.51 -13.83 7.37 -51.54 -0.38 -14.21 16 24 H 0.45 9.13 8.96 -213.46 -1.91 7.22 16 25 C 0.11 2.77 7.34 39.21 0.29 3.05 16 26 C -0.15 -2.72 10.03 22.14 0.22 -2.49 16 27 C -0.07 -0.94 9.96 22.06 0.22 -0.72 16 28 C -0.16 -2.46 9.97 22.03 0.22 -2.24 16 29 C -0.05 -1.07 10.07 22.27 0.22 -0.85 16 30 C -0.19 -5.24 6.33 -20.24 -0.13 -5.37 16 31 H 0.24 14.81 8.31 -92.70 -0.77 14.03 16 32 H -0.01 -0.48 7.68 -2.38 -0.02 -0.50 16 33 H 0.01 0.82 7.46 -2.39 -0.02 0.80 16 34 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.16 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.12 3.06 8.14 -2.39 -0.02 3.05 16 40 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 43 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -83.60 358.52 1.35 -82.25 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -0.87 Total: 17.82 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 5.17 Total: 17.16 kcal Atomic # 7 Polarization: -133.15 SS G_CDS: -4.93 Total: -138.07 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.05 Total: -26.76 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -83.60 1.35 -82.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032799524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.322 kcal (2) G-P(sol) polarization free energy of solvation -83.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds