Wall clock time and date at job start Tue Mar 31 2020 14:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 120.00459 * 2 1 4 4 O 1.21717 * 120.00395 * 185.39481 * 3 2 1 5 5 C 1.46535 * 119.99579 * 5.39448 * 3 2 1 6 6 C 1.37763 * 125.95396 * 185.94111 * 5 3 2 7 7 C 1.39866 * 106.76814 * 180.02562 * 6 5 3 8 8 C 1.36530 * 107.09347 * 0.02562 * 7 6 5 9 9 C 1.47700 * 125.65528 * 180.02562 * 8 7 6 10 10 C 1.39648 * 120.15282 * 359.72811 * 9 8 7 11 11 C 1.37939 * 119.84720 * 179.72557 * 10 9 8 12 12 C 1.38366 * 120.15107 * 0.54455 * 11 10 9 13 13 C 1.38374 * 120.30774 * 359.72618 * 12 11 10 14 14 C 1.37942 * 120.15062 * 359.97438 * 13 12 11 15 15 O 1.34344 * 108.68654 * 359.73387 * 8 7 6 16 16 C 1.46507 * 120.00056 * 179.97438 * 2 1 3 17 17 C 1.53501 * 114.20360 * 59.99919 * 16 2 1 18 18 N 1.47071 * 87.98420 * 220.14918 * 17 16 2 19 19 C 1.36931 * 136.05616 * 207.08391 * 18 17 16 20 20 H 1.08002 * 119.99985 * 354.73486 * 19 18 17 21 21 C 1.38810 * 120.00229 * 174.73318 * 19 18 17 22 22 N 1.31610 * 120.00326 * 183.91814 * 21 19 18 23 23 Si 1.86799 * 119.99566 * 3.91382 * 21 19 18 24 24 H 1.48501 * 109.47102 * 174.35083 * 23 21 19 25 25 H 1.48505 * 109.47649 * 294.34855 * 23 21 19 26 26 H 1.48501 * 109.47425 * 54.35230 * 23 21 19 27 27 C 1.47063 * 87.88440 * 27.34327 * 18 17 16 28 28 H 1.09006 * 109.47245 * 275.70734 * 1 2 3 29 29 H 1.09007 * 109.47155 * 35.70448 * 1 2 3 30 30 H 1.08994 * 109.47276 * 155.70193 * 1 2 3 31 31 H 1.08004 * 126.61538 * 0.02778 * 6 5 3 32 32 H 1.07998 * 126.45349 * 180.02562 * 7 6 5 33 33 H 1.07996 * 120.07121 * 359.97111 * 10 9 8 34 34 H 1.07996 * 119.92414 * 180.29614 * 11 10 9 35 35 H 1.07997 * 119.85122 * 179.69819 * 12 11 10 36 36 H 1.08000 * 119.92725 * 180.02562 * 13 12 11 37 37 H 1.07995 * 120.07796 * 180.02562 * 14 13 12 38 38 H 1.08992 * 113.28287 * 193.06872 * 16 2 1 39 39 H 1.08997 * 113.46477 * 105.37065 * 17 16 2 40 40 H 1.08997 * 113.46627 * 334.93278 * 17 16 2 41 41 H 0.97003 * 120.00254 * 5.00121 * 22 21 19 42 42 H 1.09008 * 113.46776 * 87.43390 * 27 18 17 43 43 H 1.08999 * 113.47057 * 217.87554 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3520 1.1695 -0.0991 5 6 1.4111 2.4334 0.1193 6 6 1.9584 3.6935 0.0181 7 6 0.9113 4.6037 0.1951 8 6 -0.2250 3.8739 0.3963 9 6 -1.5745 4.4281 0.6272 10 6 -1.7691 5.8106 0.6589 11 6 -3.0331 6.3212 0.8693 12 6 -4.1049 5.4671 1.0600 13 6 -3.9183 4.0962 1.0355 14 6 -2.6607 3.5719 0.8199 15 8 0.0869 2.5683 0.3432 16 6 2.1975 -1.2688 0.0006 17 6 1.9059 -2.1644 -1.2115 18 7 1.9168 -3.3164 -0.2974 19 6 2.1882 -4.6546 -0.4008 20 1 2.3945 -5.0906 -1.3671 21 6 2.1984 -5.4507 0.7362 22 7 2.5346 -6.7200 0.6479 23 14 1.7349 -4.7202 2.3918 24 1 1.6915 -5.7972 3.4134 25 1 2.7449 -3.7052 2.7854 26 1 0.3998 -4.0776 2.2931 27 6 1.5014 -2.4000 0.7752 28 1 -0.3634 0.1022 1.0226 29 1 -0.3634 0.8346 -0.5998 30 1 -0.3633 -0.9366 -0.4228 31 1 2.9960 3.9326 -0.1630 32 1 0.9872 5.6808 0.1762 33 1 -0.9326 6.4783 0.5150 34 1 -3.1859 7.3901 0.8892 35 1 -5.0916 5.8722 1.2292 36 1 -4.7593 3.4353 1.1846 37 1 -2.5165 2.5018 0.8006 38 1 3.2575 -1.1542 0.2269 39 1 2.7144 -2.1825 -1.9423 40 1 0.9319 -1.9785 -1.6642 41 1 2.8449 -7.0820 -0.1969 42 1 0.4207 -2.2763 0.8462 43 1 1.9653 -2.6188 1.7370 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043949659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:48 Heat of formation + Delta-G solvation = 86.173332 kcal Electronic energy + Delta-G solvation = -26671.899636 eV Core-core repulsion = 22879.687578 eV Total energy + Delta-G solvation = -3792.212058 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.89512 -40.00827 -39.34699 -38.08230 -34.92044 -33.51273 -32.53874 -32.26199 -31.36592 -29.17815 -27.88625 -26.90927 -25.44418 -24.55810 -23.46182 -22.74029 -21.48271 -21.21020 -20.20802 -19.18128 -18.10406 -17.63571 -17.27096 -16.71486 -16.56085 -16.21036 -15.43907 -15.28206 -15.09177 -14.70531 -14.14463 -13.98281 -13.77758 -13.43494 -13.37511 -13.27211 -13.19723 -13.08304 -12.98492 -12.20453 -12.12063 -11.94302 -11.80028 -11.61457 -11.47803 -11.35967 -10.61798 -10.44543 -10.41005 -10.20150 -9.91713 -9.43094 -9.40477 -9.19323 -8.97829 -8.48549 -8.18469 -7.22327 -6.35358 -3.29429 0.19250 0.93770 1.25647 2.21976 2.29416 2.99209 3.11032 3.37550 3.40837 3.41567 3.62282 4.07838 4.35534 4.49459 4.55267 4.56965 4.61360 4.67836 4.77197 4.94916 5.01952 5.03684 5.16243 5.27991 5.33956 5.38675 5.45600 5.50659 5.54834 5.58397 5.65106 5.76331 5.85131 5.90699 5.98637 6.04627 6.09377 6.14247 6.18158 6.32224 6.36068 6.45289 6.61117 6.88746 7.01203 7.37723 8.03880 8.18911 8.92344 9.43703 10.27171 11.16075 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018873 B = 0.002763 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.212062 B =10132.596997 C =11083.512815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.589 5.589 3 C 0.598 3.402 4 O -0.519 6.519 5 C -0.062 4.062 6 C -0.121 4.121 7 C -0.198 4.198 8 C 0.047 3.953 9 C -0.022 4.022 10 C -0.095 4.095 11 C -0.118 4.118 12 C -0.112 4.112 13 C -0.117 4.117 14 C -0.098 4.098 15 O -0.148 6.148 16 C 0.101 3.899 17 C 0.113 3.887 18 N -0.620 5.620 19 C -0.303 4.303 20 H 0.085 0.915 21 C -0.023 4.023 22 N -0.931 5.931 23 Si 1.072 2.928 24 H -0.294 1.294 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.084 3.916 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.163 0.837 32 H 0.157 0.843 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.053 0.947 40 H 0.041 0.959 41 H 0.262 0.738 42 H 0.048 0.952 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.812 29.175 0.313 31.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.321 5.321 3 C 0.385 3.615 4 O -0.397 6.397 5 C -0.114 4.114 6 C -0.141 4.141 7 C -0.217 4.217 8 C -0.005 4.005 9 C -0.022 4.022 10 C -0.113 4.113 11 C -0.136 4.136 12 C -0.130 4.130 13 C -0.135 4.135 14 C -0.116 4.116 15 O -0.044 6.044 16 C -0.003 4.003 17 C -0.015 4.015 18 N -0.348 5.348 19 C -0.429 4.429 20 H 0.103 0.897 21 C -0.221 4.221 22 N -0.573 5.573 23 Si 0.905 3.095 24 H -0.221 1.221 25 H -0.219 1.219 26 H -0.217 1.217 27 C -0.042 4.042 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.181 0.819 32 H 0.175 0.825 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.564 28.193 1.853 30.922 hybrid contribution 0.103 0.505 -1.714 1.790 sum -12.461 28.698 0.138 31.287 Atomic orbital electron populations 1.21967 0.79052 1.03498 1.02403 1.47832 1.07404 1.05713 1.71107 1.16649 0.86177 0.81141 0.77523 1.90886 1.12127 1.85847 1.50879 1.22546 0.80622 0.96406 1.11855 1.22089 1.01023 0.90084 1.00947 1.21701 0.91201 1.00855 1.07980 1.20762 0.94463 0.81125 1.04141 1.17799 0.88305 0.93205 1.02899 1.21094 0.97900 0.93062 0.99227 1.21070 0.92261 1.00143 1.00126 1.21340 0.99197 0.93578 0.98868 1.21153 0.97057 0.95499 0.99769 1.21369 0.92072 1.00148 0.98018 1.84289 1.24915 1.25982 1.69171 1.23697 0.97800 0.79141 0.99619 1.22753 0.98913 0.86029 0.93809 1.45787 1.79189 1.03950 1.05871 1.20142 1.46314 0.80172 0.96285 0.89712 1.25721 0.99705 0.95019 1.01705 1.70913 1.45761 1.12135 1.28489 0.83694 0.76073 0.73677 0.76067 1.22090 1.21866 1.21660 1.23276 0.97729 0.88214 0.95011 0.92086 0.90771 0.89668 0.81899 0.82521 0.85257 0.85320 0.85648 0.85332 0.85111 0.85430 0.92894 0.94173 0.92811 0.93409 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 8.11 59.84 0.49 1.42 16 2 N -0.59 -9.39 3.12 -175.14 -0.55 -9.93 16 3 C 0.60 9.69 7.63 -12.92 -0.10 9.60 16 4 O -0.52 -9.85 16.42 5.17 0.08 -9.77 16 5 C -0.06 -0.84 6.74 -36.41 -0.25 -1.08 16 6 C -0.12 -1.40 10.66 -39.15 -0.42 -1.82 16 7 C -0.20 -1.90 10.21 -39.59 -0.40 -2.31 16 8 C 0.05 0.49 7.02 -36.33 -0.25 0.24 16 9 C -0.02 -0.19 5.87 -104.98 -0.62 -0.81 16 10 C -0.09 -0.66 9.56 -39.16 -0.37 -1.04 16 11 C -0.12 -0.69 10.03 -39.64 -0.40 -1.09 16 12 C -0.11 -0.66 10.04 -39.48 -0.40 -1.06 16 13 C -0.12 -0.79 10.03 -39.64 -0.40 -1.19 16 14 C -0.10 -0.82 9.72 -39.16 -0.38 -1.20 16 15 O -0.15 -1.78 7.26 3.73 0.03 -1.75 16 16 C 0.10 1.91 4.55 -67.67 -0.31 1.60 16 17 C 0.11 2.27 8.23 -8.50 -0.07 2.20 16 18 N -0.62 -15.37 3.69 -184.61 -0.68 -16.05 16 19 C -0.30 -8.77 11.09 -15.06 -0.17 -8.94 16 20 H 0.09 2.57 8.05 -52.49 -0.42 2.15 16 21 C -0.02 -0.67 5.50 -17.44 -0.10 -0.77 16 22 N -0.93 -29.41 13.70 55.49 0.76 -28.65 16 23 Si 1.07 26.91 25.10 -169.99 -4.27 22.64 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.29 -6.93 6.34 56.52 0.36 -6.57 16 26 H -0.29 -6.73 6.68 56.52 0.38 -6.35 16 27 C 0.08 1.78 5.33 -8.37 -0.04 1.74 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.84 5.99 -51.92 -0.31 0.53 16 30 H 0.08 1.10 5.95 -51.93 -0.31 0.79 16 31 H 0.16 1.71 8.06 -52.48 -0.42 1.28 16 32 H 0.16 1.02 7.23 -52.49 -0.38 0.64 16 33 H 0.13 0.66 6.96 -52.49 -0.37 0.29 16 34 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 35 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 36 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.13 1.03 7.90 -52.49 -0.41 0.62 16 38 H 0.13 2.57 7.33 -51.93 -0.38 2.19 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.04 0.75 7.05 -51.93 -0.37 0.39 16 41 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 42 H 0.05 0.95 6.37 -51.92 -0.33 0.62 16 43 H 0.06 1.35 4.00 -51.93 -0.21 1.14 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -34.30 353.81 -8.72 -43.01 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.24 Total: -0.33 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -4.18 Total: -4.50 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.47 Total: -54.64 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.11 Total: -11.52 kcal Atomic # 14 Polarization: 26.91 SS G_CDS: -4.27 Total: 22.64 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.30 -8.72 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043949659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.185 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds