Wall clock time and date at job start Tue Mar 31 2020 14:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 120.00459 * 2 1 4 4 O 1.21717 * 120.00395 * 185.39481 * 3 2 1 5 5 C 1.46535 * 119.99579 * 5.39448 * 3 2 1 6 6 C 1.37763 * 125.95396 * 185.94111 * 5 3 2 7 7 C 1.39866 * 106.76814 * 180.02562 * 6 5 3 8 8 C 1.36530 * 107.09347 * 0.02562 * 7 6 5 9 9 C 1.47700 * 125.65528 * 180.02562 * 8 7 6 10 10 C 1.39648 * 120.15282 * 359.72811 * 9 8 7 11 11 C 1.37939 * 119.84720 * 179.72557 * 10 9 8 12 12 C 1.38366 * 120.15107 * 0.54455 * 11 10 9 13 13 C 1.38374 * 120.30774 * 359.72618 * 12 11 10 14 14 C 1.37942 * 120.15062 * 359.97438 * 13 12 11 15 15 O 1.34344 * 108.68654 * 359.73387 * 8 7 6 16 16 C 1.46507 * 120.00056 * 179.97438 * 2 1 3 17 17 C 1.53501 * 114.20360 * 59.99919 * 16 2 1 18 18 N 1.47071 * 87.98420 * 220.14918 * 17 16 2 19 19 C 1.36931 * 136.05616 * 207.08391 * 18 17 16 20 20 H 1.08002 * 119.99985 * 354.73486 * 19 18 17 21 21 C 1.38810 * 120.00229 * 174.73318 * 19 18 17 22 22 N 1.31610 * 120.00326 * 183.91814 * 21 19 18 23 23 Si 1.86799 * 119.99566 * 3.91382 * 21 19 18 24 24 H 1.48501 * 109.47102 * 174.35083 * 23 21 19 25 25 H 1.48505 * 109.47649 * 294.34855 * 23 21 19 26 26 H 1.48501 * 109.47425 * 54.35230 * 23 21 19 27 27 C 1.47063 * 87.88440 * 27.34327 * 18 17 16 28 28 H 1.09006 * 109.47245 * 275.70734 * 1 2 3 29 29 H 1.09007 * 109.47155 * 35.70448 * 1 2 3 30 30 H 1.08994 * 109.47276 * 155.70193 * 1 2 3 31 31 H 1.08004 * 126.61538 * 0.02778 * 6 5 3 32 32 H 1.07998 * 126.45349 * 180.02562 * 7 6 5 33 33 H 1.07996 * 120.07121 * 359.97111 * 10 9 8 34 34 H 1.07996 * 119.92414 * 180.29614 * 11 10 9 35 35 H 1.07997 * 119.85122 * 179.69819 * 12 11 10 36 36 H 1.08000 * 119.92725 * 180.02562 * 13 12 11 37 37 H 1.07995 * 120.07796 * 180.02562 * 14 13 12 38 38 H 1.08992 * 113.28287 * 193.06872 * 16 2 1 39 39 H 1.08997 * 113.46477 * 105.37065 * 17 16 2 40 40 H 1.08997 * 113.46627 * 334.93278 * 17 16 2 41 41 H 0.97003 * 120.00254 * 5.00121 * 22 21 19 42 42 H 1.09008 * 113.46776 * 87.43390 * 27 18 17 43 43 H 1.08999 * 113.47057 * 217.87554 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3520 1.1695 -0.0991 5 6 1.4111 2.4334 0.1193 6 6 1.9584 3.6935 0.0181 7 6 0.9113 4.6037 0.1951 8 6 -0.2250 3.8739 0.3963 9 6 -1.5745 4.4281 0.6272 10 6 -1.7691 5.8106 0.6589 11 6 -3.0331 6.3212 0.8693 12 6 -4.1049 5.4671 1.0600 13 6 -3.9183 4.0962 1.0355 14 6 -2.6607 3.5719 0.8199 15 8 0.0869 2.5683 0.3432 16 6 2.1975 -1.2688 0.0006 17 6 1.9059 -2.1644 -1.2115 18 7 1.9168 -3.3164 -0.2974 19 6 2.1882 -4.6546 -0.4008 20 1 2.3945 -5.0906 -1.3671 21 6 2.1984 -5.4507 0.7362 22 7 2.5346 -6.7200 0.6479 23 14 1.7349 -4.7202 2.3918 24 1 1.6915 -5.7972 3.4134 25 1 2.7449 -3.7052 2.7854 26 1 0.3998 -4.0776 2.2931 27 6 1.5014 -2.4000 0.7752 28 1 -0.3634 0.1022 1.0226 29 1 -0.3634 0.8346 -0.5998 30 1 -0.3633 -0.9366 -0.4228 31 1 2.9960 3.9326 -0.1630 32 1 0.9872 5.6808 0.1762 33 1 -0.9326 6.4783 0.5150 34 1 -3.1859 7.3901 0.8892 35 1 -5.0916 5.8722 1.2292 36 1 -4.7593 3.4353 1.1846 37 1 -2.5165 2.5018 0.8006 38 1 3.2575 -1.1542 0.2269 39 1 2.7144 -2.1825 -1.9423 40 1 0.9319 -1.9785 -1.6642 41 1 2.8449 -7.0820 -0.1969 42 1 0.4207 -2.2763 0.8462 43 1 1.9653 -2.6188 1.7370 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043949659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:48 Heat of formation + Delta-G solvation = 64.704482 kcal Electronic energy + Delta-G solvation = -26672.830596 eV Core-core repulsion = 22879.687578 eV Total energy + Delta-G solvation = -3793.143018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.74943 -41.40720 -39.90464 -39.55786 -36.28973 -34.55540 -34.23603 -33.17293 -31.84651 -30.44875 -29.28618 -28.12419 -27.13908 -25.70707 -24.19607 -23.84296 -22.53320 -22.00138 -21.39890 -20.66496 -19.63706 -18.99403 -18.30869 -17.83268 -17.65667 -17.25649 -16.78961 -16.41636 -15.82665 -15.73332 -15.64645 -15.14942 -15.00553 -14.53373 -14.33984 -14.22084 -14.08978 -13.87559 -13.79324 -13.71363 -13.58481 -13.34125 -13.29388 -13.03737 -12.40783 -12.28471 -12.27086 -11.93872 -11.54827 -11.34962 -11.19668 -11.14039 -11.10594 -10.64266 -9.90618 -9.80686 -9.28884 -8.96327 -8.68964 -5.54989 -0.54058 0.44332 0.46549 1.33802 1.35676 1.45401 1.49523 1.65205 1.82956 1.98409 2.49901 2.90523 2.92350 3.15021 3.26510 3.43957 3.62314 3.82456 3.97972 4.01302 4.05918 4.13024 4.18628 4.27097 4.42234 4.46758 4.47507 4.49114 4.53427 4.58253 4.62386 4.65391 4.81278 4.86210 4.93695 5.00540 5.07040 5.09722 5.25012 5.37258 5.45534 5.53324 5.58545 5.82642 5.88401 6.00168 6.16416 6.63045 6.80823 7.24329 8.15790 8.84835 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018873 B = 0.002763 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.212062 B =10132.596997 C =11083.512815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.590 5.590 3 C 0.598 3.402 4 O -0.558 6.558 5 C -0.097 4.097 6 C -0.111 4.111 7 C -0.199 4.199 8 C 0.056 3.944 9 C -0.049 4.049 10 C -0.095 4.095 11 C -0.121 4.121 12 C -0.109 4.109 13 C -0.127 4.127 14 C -0.113 4.113 15 O -0.153 6.153 16 C 0.123 3.877 17 C 0.115 3.885 18 N -0.652 5.652 19 C -0.291 4.291 20 H 0.054 0.946 21 C -0.081 4.081 22 N -0.966 5.966 23 Si 1.108 2.892 24 H -0.301 1.301 25 H -0.274 1.274 26 H -0.257 1.257 27 C 0.083 3.917 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.170 0.830 32 H 0.190 0.810 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.127 0.873 38 H 0.112 0.888 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.248 0.752 42 H 0.075 0.925 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.416 33.454 1.199 36.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.321 5.321 3 C 0.388 3.612 4 O -0.439 6.439 5 C -0.148 4.148 6 C -0.131 4.131 7 C -0.217 4.217 8 C 0.004 3.996 9 C -0.049 4.049 10 C -0.113 4.113 11 C -0.139 4.139 12 C -0.127 4.127 13 C -0.144 4.144 14 C -0.131 4.131 15 O -0.049 6.049 16 C 0.018 3.982 17 C -0.012 4.012 18 N -0.380 5.380 19 C -0.419 4.419 20 H 0.072 0.928 21 C -0.273 4.273 22 N -0.611 5.611 23 Si 0.934 3.066 24 H -0.229 1.229 25 H -0.202 1.202 26 H -0.182 1.182 27 C -0.042 4.042 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.187 0.813 32 H 0.207 0.793 33 H 0.166 0.834 34 H 0.173 0.827 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.145 0.855 38 H 0.130 0.870 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.092 0.908 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.205 32.537 2.706 36.016 hybrid contribution 0.774 -0.609 -2.090 2.310 sum -14.432 31.928 0.616 35.043 Atomic orbital electron populations 1.22134 0.76929 1.04180 1.03656 1.47755 1.08525 1.04554 1.71228 1.16904 0.85901 0.81873 0.76472 1.90855 1.13770 1.86575 1.52660 1.21991 0.81511 0.95551 1.15784 1.22360 1.01843 0.89873 0.99040 1.22031 0.89953 1.02194 1.07558 1.21283 0.95549 0.80573 1.02190 1.17958 0.87594 0.94243 1.05123 1.21395 0.99179 0.92429 0.98270 1.21448 0.91701 1.01609 0.99100 1.21728 1.00489 0.93256 0.97239 1.21406 0.96931 0.96449 0.99648 1.21499 0.92817 1.00171 0.98607 1.84238 1.24080 1.27046 1.69560 1.23027 0.97105 0.80214 0.97860 1.22913 0.99903 0.84461 0.93922 1.45772 1.80057 1.03401 1.08818 1.19984 1.44520 0.82411 0.94945 0.92822 1.27055 1.00054 0.94848 1.05333 1.71014 1.48551 1.13704 1.27827 0.83284 0.77865 0.73440 0.71972 1.22923 1.20162 1.18199 1.23438 0.99174 0.87684 0.93875 0.90737 0.89290 0.89568 0.81272 0.79304 0.83378 0.82688 0.83273 0.83867 0.85508 0.87001 0.93441 0.91651 0.94325 0.90798 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.68 8.11 127.77 1.04 2.72 16 2 N -0.59 -18.06 3.12 -826.24 -2.57 -20.63 16 3 C 0.60 19.09 7.63 86.41 0.66 19.75 16 4 O -0.56 -21.34 16.42 -4.40 -0.07 -21.41 16 5 C -0.10 -2.50 6.74 24.32 0.16 -2.33 16 6 C -0.11 -2.38 10.66 22.55 0.24 -2.14 16 7 C -0.20 -3.26 10.21 22.26 0.23 -3.03 16 8 C 0.06 1.05 7.02 24.37 0.17 1.22 16 9 C -0.05 -0.75 5.87 -20.10 -0.12 -0.87 16 10 C -0.09 -1.00 9.56 22.54 0.22 -0.78 16 11 C -0.12 -0.94 10.03 22.23 0.22 -0.72 16 12 C -0.11 -0.90 10.04 22.33 0.22 -0.67 16 13 C -0.13 -1.37 10.03 22.23 0.22 -1.15 16 14 C -0.11 -1.65 9.72 22.54 0.22 -1.43 16 15 O -0.15 -3.42 7.26 -9.57 -0.07 -3.49 16 16 C 0.12 4.54 4.55 45.55 0.21 4.75 16 17 C 0.11 4.55 8.23 83.18 0.68 5.24 16 18 N -0.65 -32.17 3.69 -737.98 -2.72 -34.89 16 19 C -0.29 -17.26 11.09 84.03 0.93 -16.33 16 20 H 0.05 3.42 8.05 -2.91 -0.02 3.40 16 21 C -0.08 -4.90 5.50 84.86 0.47 -4.44 16 22 N -0.97 -63.10 13.70 21.65 0.30 -62.81 16 23 Si 1.11 53.99 25.10 68.60 1.72 55.72 16 24 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 25 H -0.27 -12.53 6.34 99.48 0.63 -11.90 16 26 H -0.26 -11.04 6.68 99.48 0.66 -10.37 16 27 C 0.08 3.40 5.33 83.27 0.44 3.85 16 28 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.09 1.83 5.99 -2.38 -0.01 1.82 16 30 H 0.09 1.99 5.95 -2.39 -0.01 1.98 16 31 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 32 H 0.19 1.71 7.23 -2.91 -0.02 1.68 16 33 H 0.15 0.89 6.96 -2.91 -0.02 0.87 16 34 H 0.16 0.36 8.06 -2.91 -0.02 0.34 16 35 H 0.15 0.48 8.06 -2.91 -0.02 0.45 16 36 H 0.14 1.03 8.06 -2.91 -0.02 1.00 16 37 H 0.13 1.83 7.90 -2.91 -0.02 1.81 16 38 H 0.11 4.53 7.33 -2.39 -0.02 4.52 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.07 2.31 7.05 -2.39 -0.02 2.30 16 41 H 0.25 16.23 8.73 -92.71 -0.81 15.42 16 42 H 0.07 2.68 6.37 -2.38 -0.02 2.66 16 43 H 0.05 2.27 4.00 -2.39 -0.01 2.26 16 Total: -1.00 -76.86 353.81 3.68 -73.17 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.88 Total: 10.71 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 6.22 Total: 3.63 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -5.00 Total: -118.33 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.14 Total: -24.89 kcal Atomic # 14 Polarization: 53.99 SS G_CDS: 1.72 Total: 55.72 kcal Total: -76.86 3.68 -73.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043949659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.878 kcal (2) G-P(sol) polarization free energy of solvation -76.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds