Wall clock time and date at job start Tue Mar 31 2020 14:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 120.00267 * 2 1 4 4 O 1.21547 * 120.00408 * 186.97739 * 3 2 1 5 5 C 1.47867 * 120.00126 * 6.98726 * 3 2 1 6 6 C 1.39653 * 120.08688 * 20.37195 * 5 3 2 7 7 C 1.38021 * 120.09729 * 179.74744 * 6 5 3 8 8 C 1.38152 * 120.27278 * 0.56313 * 7 6 5 9 9 C 1.39407 * 120.17561 * 359.69605 * 8 7 6 10 10 C 1.48440 * 120.05304 * 180.02562 * 9 8 7 11 11 C 1.46704 * 127.10934 * 0.02562 * 10 9 8 12 12 C 1.34372 * 106.02507 * 180.02562 * 11 10 9 13 13 O 1.34160 * 108.98542 * 0.02562 * 12 11 10 14 14 C 1.34091 * 110.74113 * 359.72611 * 13 12 11 15 15 C 1.39107 * 119.89698 * 0.02562 * 9 8 7 16 16 C 1.46497 * 119.99649 * 180.02562 * 2 1 3 17 17 C 1.53945 * 113.74235 * 321.25754 * 16 2 1 18 18 N 1.47809 * 86.03617 * 90.88471 * 17 16 2 19 19 C 1.36938 * 134.45853 * 204.64510 * 18 17 16 20 20 H 1.07995 * 120.00371 * 179.86837 * 19 18 17 21 21 C 1.38809 * 119.99765 * 359.86430 * 19 18 17 22 22 N 1.31618 * 120.00282 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00099 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47104 * 90.00029 * 23 21 19 25 25 H 1.48501 * 109.46883 * 210.00122 * 23 21 19 26 26 H 1.48498 * 109.46894 * 330.00274 * 23 21 19 27 27 C 1.47585 * 91.05356 * 24.54958 * 18 17 16 28 28 H 1.08994 * 109.46935 * 266.76255 * 1 2 3 29 29 H 1.09004 * 109.46615 * 26.76100 * 1 2 3 30 30 H 1.08993 * 109.47034 * 146.76108 * 1 2 3 31 31 H 1.08002 * 119.95085 * 0.03219 * 6 5 3 32 32 H 1.08008 * 119.85982 * 180.28322 * 7 6 5 33 33 H 1.08006 * 119.91615 * 179.71971 * 8 7 6 34 34 H 1.08001 * 126.98622 * 0.02562 * 11 10 9 35 35 H 1.07996 * 125.51048 * 180.02562 * 12 11 10 36 36 H 1.08005 * 125.76462 * 180.28345 * 14 13 12 37 37 H 1.08001 * 120.13173 * 180.02562 * 15 9 8 38 38 H 1.09005 * 112.94100 * 189.66651 * 16 2 1 39 39 H 1.09007 * 113.76859 * 205.14745 * 17 16 2 40 40 H 1.08997 * 113.77305 * 336.54464 * 17 16 2 41 41 H 0.97003 * 120.00591 * 180.02562 * 22 21 19 42 42 H 1.09000 * 113.77086 * 221.15453 * 27 18 17 43 43 H 1.08997 * 113.77070 * 89.75504 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3477 1.1710 -0.1279 5 6 1.4080 2.4430 0.1558 6 6 0.1287 2.4530 0.7160 7 6 -0.5517 3.6444 0.8663 8 6 0.0225 4.8313 0.4536 9 6 1.2967 4.8338 -0.1120 10 6 1.9113 6.1106 -0.5540 11 6 1.3229 7.4519 -0.4702 12 6 2.2363 8.2907 -0.9875 13 8 3.3099 7.5838 -1.3717 14 6 3.1361 6.2792 -1.1153 15 6 1.9913 3.6379 -0.2616 16 6 2.1975 -1.2687 -0.0006 17 6 1.5555 -2.3554 0.8808 18 7 0.8156 -2.7586 -0.3336 19 6 -0.3675 -3.4085 -0.5644 20 1 -0.6981 -3.5847 -1.5773 21 6 -1.1417 -3.8408 0.5035 22 7 -0.7390 -3.6257 1.7380 23 14 -2.7552 -4.7280 0.1887 24 1 -2.5071 -6.1893 0.0986 25 1 -3.6967 -4.4535 1.3038 26 1 -3.3442 -4.2464 -1.0866 27 6 1.8620 -2.1776 -1.1970 28 1 -0.3633 -0.0580 1.0260 29 1 -0.3633 0.9177 -0.4628 30 1 -0.3633 -0.8595 -0.5633 31 1 -0.3269 1.5277 1.0363 32 1 -1.5390 3.6483 1.3042 33 1 -0.5169 5.7597 0.5698 34 1 0.3527 7.7122 -0.0733 35 1 2.1244 9.3609 -1.0792 36 1 3.8489 5.4947 -1.3225 37 1 2.9788 3.6355 -0.6990 38 1 3.2669 -1.1421 0.1680 39 1 2.2609 -3.1071 1.2353 40 1 0.9198 -1.9598 1.6729 41 1 -1.2798 -3.9281 2.4843 42 1 1.4706 -1.6402 -2.0608 43 1 2.6576 -2.8768 -1.4543 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044151577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:42 Heat of formation + Delta-G solvation = 96.652062 kcal Electronic energy + Delta-G solvation = -26839.267214 eV Core-core repulsion = 23047.509548 eV Total energy + Delta-G solvation = -3791.757667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.58168 -40.34494 -38.66630 -37.36247 -34.59002 -33.48549 -32.13760 -31.27338 -30.72813 -29.04491 -27.84969 -26.44897 -24.82916 -24.34962 -23.39716 -22.69253 -21.55034 -20.53212 -20.04103 -18.58688 -17.97679 -16.93196 -16.60458 -16.22373 -16.15864 -15.75741 -15.19234 -15.03392 -14.80948 -14.64182 -14.06090 -13.74975 -13.54813 -13.40733 -13.14386 -12.97114 -12.62630 -12.55938 -12.49859 -12.43266 -11.87820 -11.37842 -11.34325 -11.28828 -10.94572 -10.73340 -10.60806 -10.33137 -10.18051 -9.82564 -9.59795 -9.55646 -9.24708 -9.00358 -8.84927 -8.16512 -8.03133 -6.92830 -5.83944 -3.17155 0.75831 1.07784 1.68399 2.41154 2.84017 3.14862 3.33200 3.38347 3.39735 3.41024 3.95027 4.32751 4.39030 4.46586 4.69986 4.79446 4.93261 5.02922 5.10739 5.19080 5.26562 5.29874 5.41722 5.52582 5.57030 5.67766 5.79783 5.80486 5.93707 6.08746 6.11666 6.14353 6.15705 6.33467 6.35505 6.42578 6.45114 6.50485 6.68923 6.79068 6.89426 6.91445 7.14109 7.28638 7.49666 7.87265 7.93195 8.51026 8.97099 9.63181 10.51857 11.32206 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.023080 B = 0.002684 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.859292 B =10431.307865 C =11221.192920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.570 5.570 3 C 0.553 3.447 4 O -0.552 6.552 5 C -0.120 4.120 6 C -0.105 4.105 7 C -0.126 4.126 8 C -0.089 4.089 9 C -0.028 4.028 10 C -0.144 4.144 11 C -0.205 4.205 12 C -0.037 4.037 13 O -0.181 6.181 14 C -0.019 4.019 15 C -0.059 4.059 16 C 0.088 3.912 17 C 0.154 3.846 18 N -0.609 5.609 19 C -0.224 4.224 20 H 0.079 0.921 21 C -0.004 4.004 22 N -0.918 5.918 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.106 3.894 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.158 0.842 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.152 0.848 35 H 0.203 0.797 36 H 0.207 0.793 37 H 0.131 0.869 38 H 0.095 0.905 39 H 0.039 0.961 40 H 0.079 0.921 41 H 0.254 0.746 42 H 0.046 0.954 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.398 21.318 -2.876 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.299 5.299 3 C 0.342 3.658 4 O -0.432 6.432 5 C -0.123 4.123 6 C -0.123 4.123 7 C -0.144 4.144 8 C -0.108 4.108 9 C -0.028 4.028 10 C -0.145 4.145 11 C -0.224 4.224 12 C -0.104 4.104 13 O -0.077 6.077 14 C -0.086 4.086 15 C -0.078 4.078 16 C -0.017 4.017 17 C 0.028 3.972 18 N -0.336 5.336 19 C -0.352 4.352 20 H 0.097 0.903 21 C -0.201 4.201 22 N -0.565 5.565 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.021 4.021 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.127 0.873 31 H 0.175 0.825 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.169 0.831 35 H 0.220 0.780 36 H 0.224 0.776 37 H 0.149 0.851 38 H 0.113 0.887 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.959 21.249 -2.983 21.660 hybrid contribution -1.201 -0.819 0.055 1.455 sum 1.758 20.430 -2.928 20.713 Atomic orbital electron populations 1.22515 0.78805 1.04056 1.02368 1.47284 1.07453 1.04709 1.70456 1.18308 0.86915 0.83540 0.77082 1.90712 1.13998 1.87297 1.51155 1.19873 0.95515 0.93593 1.03332 1.22566 0.93368 1.00256 0.96060 1.21096 1.00563 0.91967 1.00790 1.21267 0.94133 0.98360 0.96994 1.17912 0.94357 0.90268 1.00288 1.20235 0.95267 0.92956 1.06045 1.22818 1.01568 0.91427 1.06596 1.23898 0.86006 0.97830 1.02634 1.83886 1.39803 1.18516 1.65537 1.24195 0.98541 0.83440 1.02458 1.21145 0.99317 0.90213 0.97159 1.22962 0.95555 0.83281 0.99875 1.22671 0.92224 0.90325 0.91998 1.46227 1.17935 1.67991 1.01496 1.18994 0.93428 1.30053 0.92715 0.90304 1.24756 0.99012 1.01193 0.95173 1.69810 1.38572 1.50909 0.97222 0.86180 0.83156 0.79691 0.77084 1.21680 1.21639 1.20620 1.23001 0.91598 0.93055 0.94406 0.92023 0.91559 0.87257 0.82451 0.85219 0.85870 0.83054 0.78025 0.77619 0.85109 0.88743 0.94369 0.90266 0.93584 0.93535 0.93819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.11 7.59 59.85 0.45 1.57 16 2 N -0.57 -10.45 3.09 -176.86 -0.55 -11.00 16 3 C 0.55 9.95 7.52 -12.32 -0.09 9.86 16 4 O -0.55 -11.22 16.05 5.32 0.09 -11.13 16 5 C -0.12 -1.81 5.56 -105.01 -0.58 -2.40 16 6 C -0.10 -1.38 7.61 -39.13 -0.30 -1.68 16 7 C -0.13 -1.40 10.02 -39.69 -0.40 -1.80 16 8 C -0.09 -0.97 9.61 -39.18 -0.38 -1.34 16 9 C -0.03 -0.34 5.87 -104.94 -0.62 -0.95 16 10 C -0.14 -1.57 6.24 -103.16 -0.64 -2.21 16 11 C -0.21 -1.82 10.54 -37.53 -0.40 -2.21 16 12 C -0.04 -0.29 12.05 29.37 0.35 0.07 16 13 O -0.18 -1.76 10.55 6.66 0.07 -1.69 16 14 C -0.02 -0.19 11.52 29.85 0.34 0.16 16 15 C -0.06 -0.81 9.12 -38.84 -0.35 -1.17 16 16 C 0.09 1.73 4.49 -70.15 -0.32 1.41 16 17 C 0.15 3.48 6.77 -2.84 -0.02 3.46 16 18 N -0.61 -14.60 2.32 -177.89 -0.41 -15.01 16 19 C -0.22 -5.86 9.83 -15.06 -0.15 -6.01 16 20 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 21 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 22 N -0.92 -25.56 11.39 55.49 0.63 -24.93 16 23 Si 0.91 21.08 29.55 -169.99 -5.02 16.05 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 C 0.11 2.16 8.33 -2.96 -0.02 2.14 16 28 H 0.06 1.08 6.93 -51.93 -0.36 0.72 16 29 H 0.07 0.97 5.29 -51.93 -0.27 0.70 16 30 H 0.11 2.23 5.52 -51.93 -0.29 1.94 16 31 H 0.16 2.09 4.02 -52.49 -0.21 1.88 16 32 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.12 1.04 7.24 -52.48 -0.38 0.66 16 34 H 0.15 1.03 7.60 -52.49 -0.40 0.63 16 35 H 0.20 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.21 1.61 7.33 -52.48 -0.38 1.23 16 37 H 0.13 1.71 6.81 -52.49 -0.36 1.35 16 38 H 0.09 1.83 7.28 -51.93 -0.38 1.45 16 39 H 0.04 0.89 8.14 -51.92 -0.42 0.46 16 40 H 0.08 1.95 6.87 -51.93 -0.36 1.59 16 41 H 0.25 6.93 8.31 -40.82 -0.34 6.60 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -31.58 354.01 -8.12 -39.70 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.05 Total: 4.01 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -3.21 Total: -1.33 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.33 Total: -50.94 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.16 Total: -12.83 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.58 -8.12 -39.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044151577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.348 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds