Wall clock time and date at job start Tue Mar 31 2020 14:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 120.00267 * 2 1 4 4 O 1.21547 * 120.00408 * 186.97739 * 3 2 1 5 5 C 1.47867 * 120.00126 * 6.98726 * 3 2 1 6 6 C 1.39653 * 120.08688 * 20.37195 * 5 3 2 7 7 C 1.38021 * 120.09729 * 179.74744 * 6 5 3 8 8 C 1.38152 * 120.27278 * 0.56313 * 7 6 5 9 9 C 1.39407 * 120.17561 * 359.69605 * 8 7 6 10 10 C 1.48440 * 120.05304 * 180.02562 * 9 8 7 11 11 C 1.46704 * 127.10934 * 0.02562 * 10 9 8 12 12 C 1.34372 * 106.02507 * 180.02562 * 11 10 9 13 13 O 1.34160 * 108.98542 * 0.02562 * 12 11 10 14 14 C 1.34091 * 110.74113 * 359.72611 * 13 12 11 15 15 C 1.39107 * 119.89698 * 0.02562 * 9 8 7 16 16 C 1.46497 * 119.99649 * 180.02562 * 2 1 3 17 17 C 1.53945 * 113.74235 * 321.25754 * 16 2 1 18 18 N 1.47809 * 86.03617 * 90.88471 * 17 16 2 19 19 C 1.36938 * 134.45853 * 204.64510 * 18 17 16 20 20 H 1.07995 * 120.00371 * 179.86837 * 19 18 17 21 21 C 1.38809 * 119.99765 * 359.86430 * 19 18 17 22 22 N 1.31618 * 120.00282 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00099 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47104 * 90.00029 * 23 21 19 25 25 H 1.48501 * 109.46883 * 210.00122 * 23 21 19 26 26 H 1.48498 * 109.46894 * 330.00274 * 23 21 19 27 27 C 1.47585 * 91.05356 * 24.54958 * 18 17 16 28 28 H 1.08994 * 109.46935 * 266.76255 * 1 2 3 29 29 H 1.09004 * 109.46615 * 26.76100 * 1 2 3 30 30 H 1.08993 * 109.47034 * 146.76108 * 1 2 3 31 31 H 1.08002 * 119.95085 * 0.03219 * 6 5 3 32 32 H 1.08008 * 119.85982 * 180.28322 * 7 6 5 33 33 H 1.08006 * 119.91615 * 179.71971 * 8 7 6 34 34 H 1.08001 * 126.98622 * 0.02562 * 11 10 9 35 35 H 1.07996 * 125.51048 * 180.02562 * 12 11 10 36 36 H 1.08005 * 125.76462 * 180.28345 * 14 13 12 37 37 H 1.08001 * 120.13173 * 180.02562 * 15 9 8 38 38 H 1.09005 * 112.94100 * 189.66651 * 16 2 1 39 39 H 1.09007 * 113.76859 * 205.14745 * 17 16 2 40 40 H 1.08997 * 113.77305 * 336.54464 * 17 16 2 41 41 H 0.97003 * 120.00591 * 180.02562 * 22 21 19 42 42 H 1.09000 * 113.77086 * 221.15453 * 27 18 17 43 43 H 1.08997 * 113.77070 * 89.75504 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3477 1.1710 -0.1279 5 6 1.4080 2.4430 0.1558 6 6 0.1287 2.4530 0.7160 7 6 -0.5517 3.6444 0.8663 8 6 0.0225 4.8313 0.4536 9 6 1.2967 4.8338 -0.1120 10 6 1.9113 6.1106 -0.5540 11 6 1.3229 7.4519 -0.4702 12 6 2.2363 8.2907 -0.9875 13 8 3.3099 7.5838 -1.3717 14 6 3.1361 6.2792 -1.1153 15 6 1.9913 3.6379 -0.2616 16 6 2.1975 -1.2687 -0.0006 17 6 1.5555 -2.3554 0.8808 18 7 0.8156 -2.7586 -0.3336 19 6 -0.3675 -3.4085 -0.5644 20 1 -0.6981 -3.5847 -1.5773 21 6 -1.1417 -3.8408 0.5035 22 7 -0.7390 -3.6257 1.7380 23 14 -2.7552 -4.7280 0.1887 24 1 -2.5071 -6.1893 0.0986 25 1 -3.6967 -4.4535 1.3038 26 1 -3.3442 -4.2464 -1.0866 27 6 1.8620 -2.1776 -1.1970 28 1 -0.3633 -0.0580 1.0260 29 1 -0.3633 0.9177 -0.4628 30 1 -0.3633 -0.8595 -0.5633 31 1 -0.3269 1.5277 1.0363 32 1 -1.5390 3.6483 1.3042 33 1 -0.5169 5.7597 0.5698 34 1 0.3527 7.7122 -0.0733 35 1 2.1244 9.3609 -1.0792 36 1 3.8489 5.4947 -1.3225 37 1 2.9788 3.6355 -0.6990 38 1 3.2669 -1.1421 0.1680 39 1 2.2609 -3.1071 1.2353 40 1 0.9198 -1.9598 1.6729 41 1 -1.2798 -3.9281 2.4843 42 1 1.4706 -1.6402 -2.0608 43 1 2.6576 -2.8768 -1.4543 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044151577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:41 Heat of formation + Delta-G solvation = 79.770694 kcal Electronic energy + Delta-G solvation = -26839.999245 eV Core-core repulsion = 23047.509548 eV Total energy + Delta-G solvation = -3792.489698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.26521 -41.70093 -39.96933 -38.84036 -35.98539 -34.56388 -33.93024 -32.20560 -31.67111 -30.00969 -29.48722 -27.92233 -26.59577 -25.77753 -24.31487 -24.14538 -22.50821 -21.35787 -21.22438 -20.04201 -19.01355 -18.64529 -17.93005 -17.31923 -17.07011 -16.85706 -16.76678 -16.47915 -15.91414 -15.85902 -15.53436 -15.10452 -14.72008 -14.57720 -14.47521 -14.12779 -13.96279 -13.77755 -13.75826 -13.22367 -13.20295 -13.04501 -12.94683 -12.77927 -12.41683 -12.33010 -12.03729 -11.81397 -11.62956 -11.47484 -11.24789 -11.07730 -10.72089 -10.02646 -9.92342 -9.56719 -9.02735 -8.86595 -7.86369 -5.20433 -0.21492 0.09900 1.02020 1.49271 1.50802 1.55540 1.58710 1.91253 1.99092 2.22949 2.49031 2.92881 3.26332 3.40608 3.46132 3.62006 3.79583 3.84459 3.98494 4.02386 4.20386 4.24176 4.39895 4.42857 4.45241 4.52896 4.60040 4.67989 4.76943 4.80459 4.87126 4.91231 4.98320 5.05345 5.19255 5.23420 5.27886 5.31043 5.41406 5.48352 5.50372 5.56216 5.70601 5.88791 5.91991 6.21374 6.45787 6.94043 7.06920 7.62948 8.56735 9.29410 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.023080 B = 0.002684 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.859292 B =10431.307865 C =11221.192920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.574 5.574 3 C 0.552 3.448 4 O -0.581 6.581 5 C -0.141 4.141 6 C -0.113 4.113 7 C -0.119 4.119 8 C -0.081 4.081 9 C -0.028 4.028 10 C -0.169 4.169 11 C -0.217 4.217 12 C -0.031 4.031 13 O -0.192 6.192 14 C -0.028 4.028 15 C -0.070 4.070 16 C 0.105 3.895 17 C 0.156 3.844 18 N -0.626 5.626 19 C -0.228 4.228 20 H 0.081 0.919 21 C -0.055 4.055 22 N -0.947 5.947 23 Si 0.971 3.029 24 H -0.294 1.294 25 H -0.294 1.294 26 H -0.268 1.268 27 C 0.111 3.889 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.154 0.846 32 H 0.160 0.840 33 H 0.154 0.846 34 H 0.173 0.827 35 H 0.242 0.758 36 H 0.216 0.784 37 H 0.127 0.873 38 H 0.100 0.900 39 H 0.030 0.970 40 H 0.055 0.945 41 H 0.248 0.752 42 H 0.053 0.947 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.126 23.901 -3.535 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.303 5.303 3 C 0.343 3.657 4 O -0.463 6.463 5 C -0.144 4.144 6 C -0.131 4.131 7 C -0.136 4.136 8 C -0.099 4.099 9 C -0.028 4.028 10 C -0.170 4.170 11 C -0.235 4.235 12 C -0.097 4.097 13 O -0.088 6.088 14 C -0.095 4.095 15 C -0.089 4.089 16 C -0.001 4.001 17 C 0.030 3.970 18 N -0.354 5.354 19 C -0.356 4.356 20 H 0.099 0.901 21 C -0.249 4.249 22 N -0.596 5.596 23 Si 0.800 3.200 24 H -0.222 1.222 25 H -0.221 1.221 26 H -0.193 1.193 27 C -0.015 4.015 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.171 0.829 32 H 0.178 0.822 33 H 0.172 0.828 34 H 0.191 0.809 35 H 0.258 0.742 36 H 0.232 0.768 37 H 0.145 0.855 38 H 0.118 0.882 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.690 23.848 -3.670 24.188 hybrid contribution -0.754 -1.476 0.234 1.674 sum 0.936 22.373 -3.436 22.655 Atomic orbital electron populations 1.22417 0.78123 1.04038 1.01773 1.47327 1.07829 1.04447 1.70714 1.18792 0.86722 0.84227 0.75926 1.90681 1.15313 1.87780 1.52526 1.19696 0.96484 0.92364 1.05855 1.22537 0.92851 1.01226 0.96456 1.21417 1.01446 0.91017 0.99734 1.21655 0.93521 0.99533 0.95231 1.18093 0.94806 0.90119 0.99756 1.20407 0.96037 0.93442 1.07104 1.23123 1.02801 0.90393 1.07209 1.24702 0.84807 0.99297 1.00899 1.83900 1.40791 1.18450 1.65690 1.24472 0.98772 0.83976 1.02280 1.21186 0.99516 0.90530 0.97714 1.22674 0.95683 0.83374 0.98325 1.22537 0.91733 0.91160 0.91562 1.46405 1.18316 1.67843 1.02807 1.19272 0.94277 1.29200 0.92823 0.90073 1.25455 1.02003 1.02418 0.95032 1.69980 1.39611 1.52195 0.97764 0.85194 0.79635 0.78016 0.77141 1.22175 1.22056 1.19283 1.23090 0.90887 0.93058 0.94433 0.92609 0.88737 0.90247 0.82906 0.82226 0.82794 0.80920 0.74239 0.76775 0.85510 0.88239 0.95234 0.92626 0.94267 0.92890 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.73 7.59 127.77 0.97 3.70 16 2 N -0.57 -21.37 3.09 -831.73 -2.57 -23.94 16 3 C 0.55 20.17 7.52 86.79 0.65 20.82 16 4 O -0.58 -24.10 16.05 -3.86 -0.06 -24.17 16 5 C -0.14 -4.23 5.56 -20.12 -0.11 -4.34 16 6 C -0.11 -2.85 7.61 22.56 0.17 -2.68 16 7 C -0.12 -2.29 10.02 22.20 0.22 -2.07 16 8 C -0.08 -1.51 9.61 22.53 0.22 -1.30 16 9 C -0.03 -0.62 5.87 -20.07 -0.12 -0.74 16 10 C -0.17 -3.39 6.24 -18.92 -0.12 -3.50 16 11 C -0.22 -3.19 10.54 23.60 0.25 -2.94 16 12 C -0.03 -0.39 12.05 66.94 0.81 0.42 16 13 O -0.19 -3.39 10.55 0.92 0.01 -3.38 16 14 C -0.03 -0.52 11.52 67.25 0.78 0.25 16 15 C -0.07 -1.90 9.12 22.75 0.21 -1.69 16 16 C 0.10 4.19 4.49 46.75 0.21 4.40 16 17 C 0.16 7.28 6.77 86.44 0.59 7.87 16 18 N -0.63 -30.44 2.32 -716.72 -1.66 -32.10 16 19 C -0.23 -11.98 9.83 84.03 0.83 -11.15 16 20 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 21 C -0.06 -2.97 5.50 84.86 0.47 -2.50 16 22 N -0.95 -53.88 11.39 21.65 0.25 -53.64 16 23 Si 0.97 43.60 29.55 68.60 2.03 45.63 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 25 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 C 0.11 4.52 8.33 86.49 0.72 5.24 16 28 H 0.06 2.00 6.93 -2.39 -0.02 1.98 16 29 H 0.09 2.73 5.29 -2.38 -0.01 2.71 16 30 H 0.08 3.29 5.52 -2.39 -0.01 3.27 16 31 H 0.15 3.96 4.02 -2.91 -0.01 3.95 16 32 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 33 H 0.15 1.90 7.24 -2.91 -0.02 1.88 16 34 H 0.17 1.65 7.60 -2.91 -0.02 1.63 16 35 H 0.24 0.79 8.06 -2.91 -0.02 0.77 16 36 H 0.22 3.35 7.33 -2.91 -0.02 3.33 16 37 H 0.13 3.40 6.81 -2.91 -0.02 3.38 16 38 H 0.10 3.90 7.28 -2.38 -0.02 3.88 16 39 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.06 2.85 6.87 -2.39 -0.02 2.83 16 41 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 42 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -68.84 354.01 5.77 -63.08 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 1.05 Total: 18.74 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 6.73 Total: 9.78 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -3.99 Total: -109.68 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.05 Total: -27.55 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -68.84 5.77 -63.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044151577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.847 kcal (2) G-P(sol) polarization free energy of solvation -68.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds